Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003087

Physical Location & Seq

Genomic Coordinates Reverse (-)

98361 .. 99501

Gene Structure 1141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0001200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGTGAAATATTATCATATCCTGAGTCTCTCAACTCTATCCTTGTTTCAATGCTTCTTCTTCTTCATACCATTACCATGTGCTGCTACCACTACTACCAAGTCTGCTGGAATTCAGCCAACCAAGCTTGTAGACGCTGTTTGTCGGAAAACTTATTCGAGTTACTCGTTCTGTGTGGAGTCTCTCTATAGCGACCCAAGGACTCCAACTGCTGACAGCTATGTGCTTGCCTACATCTCCTTTGGGTTGGCGTACCTCAATGCCTCCACCACCCAACAGCATGTTGCCCGCCTGTTAAACAAGACAGCAGCAGGGCATAGCCAGCAGCAGCTGCAAAGATGTTACCATGATTACAACAAGGCCATTTCTGCGCTGCAACTCGCTTACAACGACCTGAATTCCGAAACCTTCTTTGAGCTTGCTGATTTGGCAGGTGTTGCTTCTCTTGCTGCCGATGACTGCCAAGCTACTTTGAAAGTGAATACCACTTTTTCCCCTCTCACCAACATGAATAGTGATCTCAAGGGTCTCTGTAAAATCTGTGTGGTTGTCTCTAAACTCTTTACTGGACTTGCTCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

194

Amino Acids

21.32

Weight (kDa)

8.38

Isoelectric Point (pI)

23.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	42 - 182	2.2e-14	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18960 AT4G18960 AT4G18960 AT4G18960
fragaria_vesca	FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720
malus_domestica	MD05G1293700.v1.1 MD10G1271000.v1.1
prunus_persica	Prupe.3G111300_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1
pyrus_communis	pycom05g27100 pycom10g22680
rosa_chinensis	RchiOBHm_Chr5g0012431
rosa_laevigata	RLG00000031913
rosa_multiflora	Rmu_sc0003469.1_g000006 Rmu_sc0003469.1_g000007
rosa_roxburghii	Rroxscaffold_1G00064240
rosa_rugosa	Rorug05G0000900 Rorug05G0001000 Rorug05G0001100 Rorug05G0001200 Rorug05G0001300 Rorug05G0001300 Rorug05G0001400
rosa_samantha	Rh5AG095600 Rh5BG091800 Rh5CG104600 Rh5DG091200
rosa_wichuraiana	Rw5G008360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	422
Acc36I	ACCTGC	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	132
AciI	CCGC	1 cut(s)	289
AcsI	RAATTY	2 cut(s)	111, 397
AfaI	GTAC	1 cut(s)	254
AgsI	TTSAA	2 cut(s)	50, 475
AluBI	AGCT	5 cut(s)	127, 219, 331, 418, 467
AluI	AGCT	5 cut(s)	127, 219, 331, 418, 467
Alw26I	GTCTC	4 cut(s)	32, 186, 533, 556
AlwNI	CAGNNNCTG	1 cut(s)	331
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	7 cut(s)	83, 308, 325, 328, 331, 373, 449
ApoI	RAATTY	2 cut(s)	111, 397
AspLEI	GCGC	1 cut(s)	373
AsuHPI	GGTGA	2 cut(s)	16, 493
BbvI	GCAGC	7 cut(s)	70, 318, 320, 337, 340, 360, 436
BcoDI	GTCTC	4 cut(s)	32, 186, 533, 556
BfmI	CTRYAG	1 cut(s)	187
BfuAI	ACCTGC	1 cut(s)	422
BisI	GCNGC	7 cut(s)	84, 309, 326, 329, 332, 374, 450
BlsI	GCNGC	7 cut(s)	85, 310, 327, 330, 333, 375, 451
BpuEI	CTTGAG	1 cut(s)	506
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	571
BseDI	CCNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	14
BseNI	ACTGG	1 cut(s)	571
BseXI	GCAGC	7 cut(s)	70, 318, 320, 337, 340, 360, 436
BshFI	GGCC	1 cut(s)	362
BsmAI	GTCTC	4 cut(s)	32, 186, 533, 556
BsnI	GGCC	1 cut(s)	362
Bso31I	GGTCTC	1 cut(s)	533
Bsp143I	GATC	1 cut(s)	517
BspACI	CCGC	1 cut(s)	289
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	15
BspMI	ACCTGC	1 cut(s)	422
BspTNI	GGTCTC	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	571
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	1 cut(s)	517
BssT1I	CCWWGG	1 cut(s)	197
BstAPI	GCANNNNNTGC	2 cut(s)	331, 437
BstC8I	GCNNGC	4 cut(s)	228, 289, 323, 420
BstDEI	CTNAG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	1 cut(s)	520
BstMAI	GTCTC	4 cut(s)	32, 186, 533, 556
BstMBI	GATC	1 cut(s)	517
BstMWI	GCNNNNNNNGC	7 cut(s)	124, 322, 331, 368, 428, 437, 446
BstNSI	RCATGY	1 cut(s)	284
BstSFI	CTRYAG	1 cut(s)	187
BstV1I	GCAGC	7 cut(s)	70, 318, 320, 337, 340, 360, 436
BsuRI	GGCC	1 cut(s)	362
BveI	ACCTGC	1 cut(s)	422
Cac8I	GCNNGC	4 cut(s)	228, 289, 323, 420
CaiI	CAGNNNCTG	1 cut(s)	331
CfoI	GCGC	1 cut(s)	373
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	4 cut(s)	78, 281, 347, 508
CviJI	RGCY	8 cut(s)	118, 127, 219, 321, 331, 362, 418, 467
CviKI_1	RGCY	8 cut(s)	118, 127, 219, 321, 331, 362, 418, 467
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	1 cut(s)	519
DpnII	GATC	1 cut(s)	517
Eco130I	CCWWGG	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	533
EcoRI	GAATTC	2 cut(s)	111, 397
EcoT14I	CCWWGG	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	4 cut(s)	81, 284, 350, 511
FaiI	YATR	9 cut(s)	18, 68, 79, 189, 222, 282, 318, 348, 509
FatI	CATG	4 cut(s)	77, 280, 346, 507
FauI	CCCGC	1 cut(s)	296
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	7 cut(s)	84, 309, 326, 329, 332, 374, 450
Fsp4HI	GCNGC	7 cut(s)	84, 309, 326, 329, 332, 374, 450
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	7 cut(s)	84, 309, 326, 329, 332, 374, 450
HaeIII	GGCC	1 cut(s)	362
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	4 cut(s)	81, 284, 350, 511
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	3 cut(s)	25, 179, 202
HphI	GGTGA	2 cut(s)	16, 493
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	147, 403, 579
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	418
HpyCH4V	TGCA	2 cut(s)	334, 376
HpyF10VI	GCNNNNNNNGC	7 cut(s)	124, 322, 331, 368, 428, 437, 446
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	4 cut(s)	81, 284, 350, 511
HspAI	GCGC	1 cut(s)	371
Kzo9I	GATC	1 cut(s)	517
LpnPI	CCDG	8 cut(s)	35, 93, 297, 305, 335, 407, 417, 552
Lsp1109I	GCAGC	7 cut(s)	70, 318, 320, 337, 340, 360, 436
MaeIII	GTNAC	2 cut(s)	161, 341
MalI	GATC	1 cut(s)	519
MboI	GATC	1 cut(s)	517
MboII	GAAGA	3 cut(s)	49, 52, 55
MluCI	AATT	2 cut(s)	111, 397
MlyI	GAGTC	3 cut(s)	34, 188, 196
MmeI	TCCRAC	2 cut(s)	125, 230
MnlI	CCTC	3 cut(s)	266, 274, 507
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	2 cut(s)	76, 506
MspA1I	CMGCKG	1 cut(s)	331
MwoI	GCNNNNNNNGC	7 cut(s)	124, 322, 331, 368, 428, 437, 446
NdeII	GATC	1 cut(s)	517
NlaIII	CATG	4 cut(s)	81, 284, 350, 511
NspI	RCATGY	1 cut(s)	284
PaqCI	CACCTGC	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	2 cut(s)	164, 387
PkrI	GCNGC	7 cut(s)	85, 310, 327, 330, 333, 375, 451
PleI	GAGTC	3 cut(s)	33, 187, 196
PpsI	GAGTC	3 cut(s)	33, 187, 196
PstNI	CAGNNNCTG	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	331
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
RseI	CAYNNNNRTG	2 cut(s)	76, 506
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	7 cut(s)	84, 309, 326, 329, 332, 374, 450
Sau3AI	GATC	1 cut(s)	517
SchI	GAGTC	3 cut(s)	34, 188, 196
SetI	ASST	9 cut(s)	129, 221, 258, 333, 396, 410, 420, 436, 469
SfcI	CTRYAG	1 cut(s)	187
SmiMI	CAYNNNNRTG	2 cut(s)	76, 506
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	2 cut(s)	111, 397
SsiI	CCGC	1 cut(s)	289
SspI	AATATT	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	197
TaqI	TCGA	1 cut(s)	158
TasI	AATT	2 cut(s)	111, 397
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TseI	GCWGC	7 cut(s)	83, 308, 325, 328, 331, 373, 449
TspDTI	ATGAA	2 cut(s)	55, 524
XapI	RAATTY	2 cut(s)	111, 397
XceI	RCATGY	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.