Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003087

Physical Location & Seq

Genomic Coordinates Forward (+)

10382856 .. 10388539

Gene Structure 5684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18960.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ACGGCGTACCAATCGGAGCTAGGAGGAGATTCCTCTCCCTTGAGGAAATCTGGGAGAGGAAAGATCGAAATCAAACGGATCGAGAACACAACGAATCGTCAAGTCACTTTTTGCAAACGTAGAAATGGTTTGCTCAAGAAAGCTTACGAGCTCTCTGTTCTTTGTGATGCTGAAGTCGCACTCATCGTCTTCTCTAGCCGTGGTCGTCTCTATGAGTACTCTAACAACAGTGTAAAAGGGACTATTGAGAGGTACAAGAAGGCAATATCGGACAATTCTAACACCGGATCGGTGGCAGAAATTAATGCACAGTATTATCAACAAGAATCAGCCAAATTGCGTCAACAAATAATCAGCATACAAAACTCCAACAGGCAATTGATGGGTGAGACGATAGGGTCAATGTCTCCCAAAGAGCTCAGGAACTTGGAAGGCAGATTAGAGAGAAGTATTACCCGAATCCGATCCAAGAAGAATGAGCTCTTATTTTCTGAAATCGACTACATGCAGAAAAGAGAAGTTGATTTGCATAACGATAACCAGATTCTTCGTGCAAAGATAGCTGAAAATGAGAGGAACAATCCGAGTATAAGTCTAATGCCAGGAGGATCTAACTACGAGCAGCTTATGCCACCACCTCAAACGCAATCTCAACCGTTTGATTCACGGAATTATTTCCAAGTCGCGGCATTGCAACCTAACAATCACCATTACTCATCCGCGGGTCGCCAAGACCAAACCGCTCTCCAGTTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

252

Amino Acids

28.69

Weight (kDa)

9.51

Isoelectric Point (pI)

65.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	88 - 173	4.9e-28	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18960 AT4G18960 AT4G18960 AT4G18960
fragaria_vesca	FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720
malus_domestica	MD05G1293700.v1.1 MD10G1271000.v1.1
prunus_persica	Prupe.3G111300_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1
pyrus_communis	pycom05g27100 pycom10g22680
rosa_chinensis	RchiOBHm_Chr5g0012431
rosa_laevigata	RLG00000031913
rosa_multiflora	Rmu_sc0003469.1_g000006 Rmu_sc0003469.1_g000007
rosa_roxburghii	Rroxscaffold_1G00064240
rosa_rugosa	Rorug05G0000900 Rorug05G0001000 Rorug05G0001100 Rorug05G0001200 Rorug05G0001300 Rorug05G0001300 Rorug05G0001400
rosa_samantha	Rh5AG095600 Rh5BG091800 Rh5CG104600 Rh5DG091200
rosa_wichuraiana	Rw5G008360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	397
AccBSI	CCGCTC	1 cut(s)	743
AccII	CGCG	2 cut(s)	686, 722
AciI	CCGC	4 cut(s)	686, 720, 722, 741
AclWI	GGATC	4 cut(s)	86, 295, 459, 616
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	3 cut(s)	8, 218, 254
AfiI	CCNNNNNNNGG	1 cut(s)	685
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	7 cut(s)	19, 143, 151, 418, 481, 563, 625
AluI	AGCT	7 cut(s)	19, 143, 151, 418, 481, 563, 625
Alw21I	GWGCWC	3 cut(s)	153, 420, 483
Alw26I	GTCTC	3 cut(s)	212, 383, 411
AlwI	GGATC	4 cut(s)	86, 295, 459, 616
ApeKI	GCWGC	1 cut(s)	622
AseI	ATTAAT	1 cut(s)	303
Asp700I	GAANNNNTTC	1 cut(s)	674
AsuHPI	GGTGA	2 cut(s)	398, 698
BanII	GRGCYC	3 cut(s)	153, 420, 483
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	3 cut(s)	153, 420, 483
BbvI	GCAGC	1 cut(s)	634
BccI	CCATC	1 cut(s)	376
BceAI	ACGGC	2 cut(s)	18, 183
BciT130I	CCWGG	1 cut(s)	603
BcoDI	GTCTC	3 cut(s)	212, 383, 411
BfaI	CTAG	2 cut(s)	20, 195
BisI	GCNGC	2 cut(s)	623, 687
BlsI	GCNGC	2 cut(s)	624, 688
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	603
BmrFI	CCNGG	1 cut(s)	603
BmsI	GCATC	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	731
Bpu10I	CCTNAGC	1 cut(s)	419
BpuEI	CTTGAG	2 cut(s)	61, 119
BsaBI	GATNNNNATC	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	199, 720
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	685
Bse1I	ACTGG	1 cut(s)	748
Bse3DI	GCAATG	1 cut(s)	689
Bse8I	GATNNNNATC	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	2 cut(s)	199, 720
BseGI	GGATG	1 cut(s)	716
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	685
BseMI	GCAATG	1 cut(s)	689
BseMII	CTCAG	1 cut(s)	433
BseNI	ACTGG	1 cut(s)	748
BseRI	GAGGAG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	634
Bsh1236I	CGCG	2 cut(s)	686, 722
BsiHKAI	GWGCWC	3 cut(s)	153, 420, 483
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	1 cut(s)	685
BsmAI	GTCTC	3 cut(s)	212, 383, 411
BsmBI	CGTCTC	2 cut(s)	212, 383
BsmFI	GGGAC	1 cut(s)	253
Bsp1286I	GDGCHC	3 cut(s)	153, 420, 483
Bsp143I	GATC	5 cut(s)	63, 78, 287, 464, 608
BspACI	CCGC	4 cut(s)	686, 720, 722, 741
BspCNI	CTCAG	1 cut(s)	432
BspFNI	CGCG	2 cut(s)	686, 722
BspPI	GGATC	4 cut(s)	86, 295, 459, 616
BsrBI	CCGCTC	1 cut(s)	743
BsrDI	GCAATG	1 cut(s)	689
BsrI	ACTGG	1 cut(s)	748
BssECI	CCNNGG	2 cut(s)	199, 720
BssMI	GATC	5 cut(s)	63, 78, 287, 464, 608
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	3 cut(s)	230, 312, 657
BstAPI	GCANNNNNTGC	1 cut(s)	628
BstDEI	CTNAG	1 cut(s)	419
BstDSI	CCRYGG	2 cut(s)	199, 720
BstF5I	GGATG	1 cut(s)	716
BstFNI	CGCG	2 cut(s)	686, 722
BstKTI	GATC	5 cut(s)	66, 81, 290, 467, 611
BstMAI	GTCTC	3 cut(s)	212, 383, 411
BstMBI	GATC	5 cut(s)	63, 78, 287, 464, 608
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 560, 628
BstNI	CCWGG	1 cut(s)	603
BstNSI	RCATGY	1 cut(s)	508
BstSCI	CCNGG	1 cut(s)	601
BstUI	CGCG	2 cut(s)	686, 722
BstV1I	GCAGC	1 cut(s)	634
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	608
BtgI	CCRYGG	2 cut(s)	199, 720
BtsCI	GGATG	1 cut(s)	716
BtsIMutI	CAGTG	1 cut(s)	235
Cfr42I	CCGCGG	1 cut(s)	723
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	3 cut(s)	7, 217, 253
CviAII	CATG	1 cut(s)	505
CviJI	RGCY	9 cut(s)	19, 143, 151, 198, 332, 418, 481, 563, 625
CviKI_1	RGCY	9 cut(s)	19, 143, 151, 198, 332, 418, 481, 563, 625
CviQI	GTAC	3 cut(s)	7, 217, 253
DdeI	CTNAG	1 cut(s)	419
DpnI	GATC	5 cut(s)	65, 80, 289, 466, 610
DpnII	GATC	5 cut(s)	63, 78, 287, 464, 608
DrdI	GACNNNNNNGTC	1 cut(s)	397
DseDI	GACNNNNNNGTC	1 cut(s)	397
Ecl136II	GAGCTC	3 cut(s)	151, 418, 481
Eco24I	GRGCYC	3 cut(s)	153, 420, 483
Eco53kI	GAGCTC	3 cut(s)	151, 418, 481
Eco57I	CTGAAG	1 cut(s)	192
EcoICRI	GAGCTC	3 cut(s)	151, 418, 481
EcoRII	CCWGG	1 cut(s)	601
EcoT38I	GRGCYC	3 cut(s)	153, 420, 483
Esp3I	CGTCTC	2 cut(s)	212, 383
FaeI	CATG	1 cut(s)	508
FaiI	YATR	6 cut(s)	213, 359, 506, 531, 590, 629
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	1 cut(s)	504
FauI	CCCGC	1 cut(s)	715
Fnu4HI	GCNGC	2 cut(s)	623, 687
FokI	GGATG	1 cut(s)	703
FriOI	GRGCYC	3 cut(s)	153, 420, 483
Fsp4HI	GCNGC	2 cut(s)	623, 687
FspBI	CTAG	2 cut(s)	20, 195
GluI	GCNGC	2 cut(s)	623, 687
GsuI	CTGGAG	1 cut(s)	731
HapII	CCGG	1 cut(s)	285
HgaI	GACGC	1 cut(s)	329
Hin1II	CATG	1 cut(s)	508
HincII	GTYRAC	1 cut(s)	344
HindII	GTYRAC	1 cut(s)	344
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	6 cut(s)	29, 94, 326, 459, 544, 662
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	2 cut(s)	398, 698
Hpy166II	GTNNAC	1 cut(s)	344
Hpy188I	TCNGA	5 cut(s)	16, 271, 464, 493, 585
Hpy188III	TCNNGA	3 cut(s)	82, 136, 421
Hpy8I	GTNNAC	1 cut(s)	344
HpyAV	CCTTC	2 cut(s)	253, 425
HpyCH4III	ACNGT	3 cut(s)	230, 312, 657
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	6 cut(s)	114, 308, 508, 529, 554, 694
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 560, 628
HpyF3I	CTNAG	1 cut(s)	419
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	1 cut(s)	508
KspI	CCGCGG	1 cut(s)	723
Kzo9I	GATC	5 cut(s)	63, 78, 287, 464, 608
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	7 cut(s)	36, 298, 358, 406, 554, 588, 615
Lsp1109I	GCAGC	1 cut(s)	634
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	2 cut(s)	20, 195
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	5 cut(s)	65, 80, 289, 466, 610
MbiI	CCGCTC	1 cut(s)	743
MboI	GATC	5 cut(s)	63, 78, 287, 464, 608
MboII	GAAGA	3 cut(s)	181, 484, 539
MfeI	CAATTG	1 cut(s)	377
MflI	RGATCY	1 cut(s)	608
MhlI	GDGCHC	3 cut(s)	153, 420, 483
MluCI	AATT	5 cut(s)	274, 300, 335, 377, 670
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	8 cut(s)	17, 36, 43, 50, 243, 567, 599, 648
MroXI	GAANNNNTTC	1 cut(s)	674
MseI	TTAA	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	603
MunI	CAATTG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	603
MvnI	CGCG	2 cut(s)	686, 722
MwoI	GCNNNNNNNGC	3 cut(s)	176, 560, 628
NdeII	GATC	5 cut(s)	63, 78, 287, 464, 608
NlaIII	CATG	1 cut(s)	508
NmuCI	GTSAC	1 cut(s)	103
NspI	RCATGY	1 cut(s)	508
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	674
PfeI	GAWTC	6 cut(s)	29, 94, 326, 459, 544, 662
PkrI	GCNGC	2 cut(s)	624, 688
PshBI	ATTAAT	1 cut(s)	303
Psp124BI	GAGCTC	3 cut(s)	153, 420, 483
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	608
RsaI	GTAC	3 cut(s)	8, 218, 254
RsaNI	GTAC	3 cut(s)	7, 217, 253
SacI	GAGCTC	3 cut(s)	153, 420, 483
SacII	CCGCGG	1 cut(s)	723
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	2 cut(s)	623, 687
Sau3AI	GATC	5 cut(s)	63, 78, 287, 464, 608
ScaI	AGTACT	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	603
SduI	GDGCHC	3 cut(s)	153, 420, 483
SfaNI	GCATC	1 cut(s)	157
Sfr303I	CCGCGG	1 cut(s)	723
SgrBI	CCGCGG	1 cut(s)	723
SmlI	CTYRAG	2 cut(s)	40, 134
SmoI	CTYRAG	2 cut(s)	40, 134
Sse9I	AATT	5 cut(s)	274, 300, 335, 377, 670
SsiI	CCGC	4 cut(s)	686, 720, 722, 741
SspMI	CTAG	2 cut(s)	20, 195
SstI	GAGCTC	3 cut(s)	153, 420, 483
StyD4I	CCNGG	1 cut(s)	601
TaaI	ACNGT	3 cut(s)	230, 312, 657
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	3 cut(s)	66, 81, 498
TasI	AATT	5 cut(s)	274, 300, 335, 377, 670
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	1 cut(s)	689
TfiI	GAWTC	6 cut(s)	29, 94, 326, 459, 544, 662
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	622
Tsp45I	GTSAC	1 cut(s)	103
TspGWI	ACGGA	2 cut(s)	91, 682
TspRI	CASTG	1 cut(s)	235
VspI	ATTAAT	1 cut(s)	303
XceI	RCATGY	1 cut(s)	508
XmnI	GAANNNNTTC	1 cut(s)	674
XspI	CTAG	2 cut(s)	20, 195
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.