Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003087

Physical Location & Seq

Genomic Coordinates Forward (+)

8749818 .. 8756806

Gene Structure 6989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG095600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCCTATGAAAACAAACCCAACACGGTCCTGGACGCTGATGCCCAAAGAAGATTGGGAAGGGGAAAGATCGAGATCAAGCGGATAGAAAACACCACCAATCGTCAAGTCACCTTCTGCAAAAGGCGCAATGGTTTGCTCAAGAAGGCCTATGAGCTCTCTGTGCTCTGTGATGCTGAGGTTGCTCTCATAGTCTTCTCTAACCGTGGCCGCCTCTATGAGTATTCAAACAACAGTGTTAGAGAAACAATTGAACGATACAAGAAGGCATGTGCAGATTCTTCAAATAATGGATCTGTCTCTGAAGCTACTACTCAGTACTATCAGCAAGAAGCTGCCAAACTGCGTGCCCAGATAACCACTTTGCAGAACAGTAACAGGGGTTATATGGCTGAGGGTTTGAGCAATATGTCTATCAAGGAGCTCAAGGGCGTGGAGACCAAACTTGAGAAAGCAATTAGCAGAATTAGATCCAAGAAGGTATCTCTTCCATATGAGTATTTGATATTCTTTGTGGTGGATTTTTACATAATTACCACTGACAAGTTTTCCCTTTTTTGTTTACTTTTTATGTATTTATTTTATTTTGAACTCTCTCAGAATGAGCTCTTGTTTGCCGAAATTGAGTACATGCAGAAAAGGGTAAGTCTCTTCTACTGGCTCATCATTACTTCCTCTTGCACATTGTTTCCCTGGAAATATGAGATAGGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

238

Amino Acids

27.79

Weight (kDa)

9.09

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	28 - 75	1.4e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	103 - 163	2.2e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18960 AT4G18960 AT4G18960 AT4G18960
fragaria_vesca	FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720
malus_domestica	MD05G1293700.v1.1 MD10G1271000.v1.1
prunus_persica	Prupe.3G111300_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1
pyrus_communis	pycom05g27100 pycom10g22680
rosa_chinensis	RchiOBHm_Chr5g0012431
rosa_laevigata	RLG00000031913
rosa_multiflora	Rmu_sc0003469.1_g000006 Rmu_sc0003469.1_g000007
rosa_roxburghii	Rroxscaffold_1G00064240
rosa_rugosa	Rorug05G0000900 Rorug05G0001000 Rorug05G0001100 Rorug05G0001200 Rorug05G0001300 Rorug05G0001300 Rorug05G0001400
rosa_samantha	Rh5AG095600 Rh5BG091800 Rh5CG104600 Rh5DG091200
rosa_wichuraiana	Rw5G008360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	82, 211
AclWI	GGATC	2 cut(s)	301, 465
AcoI	YGGCCR	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	2 cut(s)	320, 629
AgsI	TTSAA	4 cut(s)	228, 254, 285, 590
AjnI	CCWGG	2 cut(s)	30, 692
AluBI	AGCT	5 cut(s)	157, 308, 335, 424, 607
AluI	AGCT	5 cut(s)	157, 308, 335, 424, 607
Alw21I	GWGCWC	4 cut(s)	159, 168, 426, 609
Alw26I	GTCTC	3 cut(s)	304, 431, 653
AlwI	GGATC	2 cut(s)	301, 465
AoxI	GGCC	3 cut(s)	3, 147, 208
ApeKI	GCWGC	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	352
BanII	GRGCYC	3 cut(s)	159, 426, 609
BbsI	GAAGAC	1 cut(s)	187
Bbv12I	GWGCWC	4 cut(s)	159, 168, 426, 609
BbvCI	CCTCAGC	2 cut(s)	177, 393
BbvI	GCAGC	1 cut(s)	322
BciT130I	CCWGG	2 cut(s)	32, 694
BcoDI	GTCTC	3 cut(s)	304, 431, 653
BisI	GCNGC	2 cut(s)	211, 336
BlsI	GCNGC	2 cut(s)	212, 337
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	2 cut(s)	32, 694
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	32, 694
BmsI	GCATC	2 cut(s)	31, 163
BpiI	GAAGAC	1 cut(s)	187
Bpu10I	CCTNAGC	2 cut(s)	177, 393
BpuEI	CTTGAG	3 cut(s)	125, 410, 467
BsaBI	GATNNNNATC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	2 cut(s)	205, 692
Bse1I	ACTGG	1 cut(s)	662
Bse3DI	GCAATG	1 cut(s)	136
Bse8I	GATNNNNATC	1 cut(s)	74
BseBI	CCWGG	2 cut(s)	32, 694
BseDI	CCNNGG	2 cut(s)	205, 692
BseJI	GATNNNNATC	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	4 cut(s)	168, 329, 384, 611
BseNI	ACTGG	1 cut(s)	662
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	1 cut(s)	322
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	3 cut(s)	5, 149, 210
BsiHKAI	GWGCWC	4 cut(s)	159, 168, 426, 609
BsmAI	GTCTC	3 cut(s)	304, 431, 653
BsnI	GGCC	3 cut(s)	5, 149, 210
Bso31I	GGTCTC	1 cut(s)	431
Bsp1286I	GDGCHC	5 cut(s)	159, 168, 352, 426, 609
Bsp143I	GATC	4 cut(s)	69, 75, 293, 470
BspACI	CCGC	2 cut(s)	82, 211
BspANI	GGCC	3 cut(s)	5, 149, 210
BspCNI	CTCAG	4 cut(s)	169, 328, 385, 610
BspPI	GGATC	2 cut(s)	301, 465
BspTNI	GGTCTC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	662
BssECI	CCNNGG	2 cut(s)	205, 692
BssMI	GATC	4 cut(s)	69, 75, 293, 470
Bst2UI	CCWGG	2 cut(s)	32, 694
Bst4CI	ACNGT	4 cut(s)	28, 206, 236, 374
Bst6I	CTCTTC	2 cut(s)	492, 656
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	4 cut(s)	177, 315, 393, 597
BstDSI	CCRYGG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	4 cut(s)	72, 78, 296, 473
BstMAI	GTCTC	3 cut(s)	304, 431, 653
BstMBI	GATC	4 cut(s)	69, 75, 293, 470
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 163, 182
BstNI	CCWGG	2 cut(s)	32, 694
BstNSI	RCATGY	2 cut(s)	273, 634
BstSCI	CCNGG	2 cut(s)	30, 692
BstSLI	GKGCMC	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	322
BstV2I	GAAGAC	1 cut(s)	187
BstX2I	RGATCY	2 cut(s)	293, 470
BstYI	RGATCY	2 cut(s)	293, 470
BsuRI	GGCC	3 cut(s)	5, 149, 210
BtgI	CCRYGG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	241, 537
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	28
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	319, 628
CviAII	CATG	2 cut(s)	270, 631
CviQI	GTAC	2 cut(s)	319, 628
DdeI	CTNAG	4 cut(s)	177, 315, 393, 597
DpnI	GATC	4 cut(s)	71, 77, 295, 472
DpnII	GATC	4 cut(s)	69, 75, 293, 470
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	2 cut(s)	492, 656
EarI	CTCTTC	2 cut(s)	492, 656
Ecl136II	GAGCTC	3 cut(s)	157, 424, 607
Eco147I	AGGCCT	1 cut(s)	149
Eco24I	GRGCYC	3 cut(s)	159, 426, 609
Eco31I	GGTCTC	1 cut(s)	431
Eco47I	GGWCC	1 cut(s)	28
Eco53kI	GAGCTC	3 cut(s)	157, 424, 607
Eco57I	CTGAAG	1 cut(s)	324
EcoICRI	GAGCTC	3 cut(s)	157, 424, 607
EcoRII	CCWGG	2 cut(s)	30, 692
EcoT38I	GRGCYC	3 cut(s)	159, 426, 609
FaeI	CATG	2 cut(s)	273, 634
FatI	CATG	2 cut(s)	269, 630
FauNDI	CATATG	1 cut(s)	493
Fnu4HI	GCNGC	2 cut(s)	211, 336
FriOI	GRGCYC	3 cut(s)	159, 426, 609
Fsp4HI	GCNGC	2 cut(s)	211, 336
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	2 cut(s)	211, 336
HaeIII	GGCC	3 cut(s)	5, 149, 210
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	273, 634
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	278
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	563
Hpy188I	TCNGA	2 cut(s)	304, 600
Hpy188III	TCNNGA	2 cut(s)	73, 142
Hpy8I	GTNNAC	1 cut(s)	563
HpyAV	CCTTC	5 cut(s)	54, 124, 139, 259, 472
HpyCH4III	ACNGT	4 cut(s)	28, 206, 236, 374
HpyCH4V	TGCA	5 cut(s)	120, 275, 367, 634, 681
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 163, 182
HpyF3I	CTNAG	4 cut(s)	177, 315, 393, 597
Hsp92II	CATG	2 cut(s)	273, 634
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	4 cut(s)	69, 75, 293, 470
LmnI	GCTCC	1 cut(s)	421
LpnPI	CCDG	7 cut(s)	17, 44, 364, 365, 643, 679, 706
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	2 cut(s)	31, 163
MaeIII	GTNAC	2 cut(s)	109, 374
MalI	GATC	4 cut(s)	71, 77, 295, 472
MboI	GATC	4 cut(s)	69, 75, 293, 470
MboII	GAAGA	5 cut(s)	63, 187, 273, 479, 643
MfeI	CAATTG	1 cut(s)	249
MflI	RGATCY	2 cut(s)	293, 470
MhlI	GDGCHC	5 cut(s)	159, 168, 352, 426, 609
MluCI	AATT	5 cut(s)	249, 456, 465, 531, 621
MnlI	CCTC	4 cut(s)	172, 224, 388, 685
MspR9I	CCNGG	2 cut(s)	32, 694
MunI	CAATTG	1 cut(s)	249
MvaI	CCWGG	2 cut(s)	32, 694
MwoI	GCNNNNNNNGC	3 cut(s)	126, 163, 182
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	4 cut(s)	69, 75, 293, 470
NlaIII	CATG	2 cut(s)	273, 634
NmuCI	GTSAC	1 cut(s)	109
NspI	RCATGY	2 cut(s)	273, 634
PceI	AGGCCT	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	278
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	2 cut(s)	212, 337
Psp124BI	GAGCTC	3 cut(s)	159, 426, 609
Psp6I	CCWGG	2 cut(s)	30, 692
PspGI	CCWGG	2 cut(s)	30, 692
PspPI	GGNCC	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	293, 470
RsaI	GTAC	2 cut(s)	320, 629
RsaNI	GTAC	2 cut(s)	319, 628
SacI	GAGCTC	3 cut(s)	159, 426, 609
SatI	GCNGC	2 cut(s)	211, 336
Sau3AI	GATC	4 cut(s)	69, 75, 293, 470
Sau96I	GGNCC	1 cut(s)	28
ScaI	AGTACT	1 cut(s)	320
ScrFI	CCNGG	2 cut(s)	32, 694
SduI	GDGCHC	5 cut(s)	159, 168, 352, 426, 609
SetI	ASST	9 cut(s)	116, 159, 183, 310, 337, 426, 483, 609, 712
SfaNI	GCATC	2 cut(s)	31, 163
SinI	GGWCC	1 cut(s)	28
SmlI	CTYRAG	3 cut(s)	140, 425, 446
SmoI	CTYRAG	3 cut(s)	140, 425, 446
Sse9I	AATT	5 cut(s)	249, 456, 465, 531, 621
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	2 cut(s)	82, 211
SstI	GAGCTC	3 cut(s)	159, 426, 609
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	2 cut(s)	30, 692
TaaI	ACNGT	4 cut(s)	28, 206, 236, 374
TaqI	TCGA	1 cut(s)	72
TasI	AATT	5 cut(s)	249, 456, 465, 531, 621
TatI	WGTACW	2 cut(s)	318, 627
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	278
TscAI	CASTG	2 cut(s)	241, 544
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	24
TspRI	CASTG	2 cut(s)	241, 544
VpaK11BI	GGWCC	1 cut(s)	28
XceI	RCATGY	2 cut(s)	273, 634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.