Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003087

Physical Location & Seq

Genomic Coordinates Reverse (-)

95819 .. 98146

Gene Structure 2328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0001100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2037 bp

ATGCACAGTTGGAGCATTTCACATGCGCCGAAGGGGTTTATCTTGGGCCTAGGAAGCCTTTGGGTTCCCCTTGACAAAGTCAAAAAAAAATCCTCGTCCCCAAGACAGTTGAATGCTTCTGCTCAGGTGGAGCCAAACTTGAATTCGATTGAAGCCGGTCGTCGTCGTCGTCAAAAGCCAAACCTGAGTCTTTGGTATAAAAGTGATACATATAGCTGTAACTGTGAGATTATAAATCTGGGGCGCTGTGGCAAAGTGAAAGATGCAAGGAAGCTGTTCGACGATATGCCTCAACGAGATGCTGTCTCTTATGCGTCCATGATCAATGTTTACTTGAAGAACGATGATCTTCCCAATGCACAGAGGCTCTTTCAGGCCATGCCCACCAGTAATATTGTTGCTGAATCTGCAATGGTTAGTGGTTATGTCAAGGCAGGCCGTATAGCTGAGGCTCGTCAAGTTTTTGATCGCATGGAAAACAGAAATGTGTATTCTTGGACCAGTTTGATATCCGGGTATCTCAGTTGCGGACAAGTTGACGAGGCCCGTCGGCTTTTTGGTCGTATGCCTGTCAAAAATGTGGTGTCCTGGACTACTATGATCCTGGGTTACGCTCGCAACAACATGATTGATGAAGCGCACCGTGTGTTTAACCTTATGCCTGAAAGGAACACAGTCTCATGGACAGTTATGATCAAGGCTCTTATTGAGAATGATCAATTTGATGACGCACTTTGCCTCTTCAATGATATGCCACAACGGAACCTATATTCTTGGAACATCATAATCTTGGGTCTTCTTAATGCAAATAGAGTAAGTGAAGCCATCAAACTCTTCAGTTCAATGCCTCAGAGGAATGCAATTTCTTGGACTACTATGGTTACGGGGTTGGCACATAACAAGATGACTAAACTTGCAAGAGAGTACTTTGATCGGATGCCTAACAAAGATGTAGCTGCCTGGAATGCTATGATTGCATCATATGTTGACGAAGGCCTCATGGCAGAAGCCGGTGAGCTATTCAGTTTCATGCACGAAAGGAATGTTGTTACTTGGAATCTGATGATTGATGGTTATACCAAAAGTGGGCCAAAAGAACAAGCCTTAAAGCACCTAATTCTGATGCTTCGGTTTTGCTTTAGACCTAATGGGACTACCATCGCTAGCGTATTGAGCTCATGCGAGGACATGATGGAGCTAATGCAAGCTCATGCACTGGTCCTATCACATGGGTTTGAGCATGACACAGTCGTTGTGAATACACTAGTCACTATGTATTCCAGAAATGGGGATGTTACTTCTGCTAGGTTTGTTTTTGATCATCTTGGGGCTAAGGATGTGGCATCATGGAATGCAATGATATTAGCATATTCAAATCACGGATATGGTCACCATGCATTGCAGGTCTTCGCACACATGTTAAGATCAGGAGCCAAGCCAGATGACATTACTTTTGTTGGAGTCTTATCAGCTTGTAGTCATGCTGGTCTTGTCAACAAAGGTCAGAGGCTTTTCAATTCAATGAATCATGTTTGTGGTATAGAACCAAAGGCCCAGCACTATTCCTGCCTTGTGGACATCTTAGGCCGAGCAGGACTAGTGGATGAGGCTACGAAGGTAGTACGCATGATGCCTGCTTCTGAGAAGGATGCTGCCGTTCTAGGAGCATTGCTTGGTGCTTATAGGTTCCATGGAAATATTACAATGGCAAGTCTTATTGGAGAGGCACTTCAAGAGCTAGAGCCAGGTAGCTCTGGGGGGTATGTACTCTTAGCTATAATTTATGCTGCACGTGGAAAATGGGATGAATTTGCTCGAGTAAGAAAAAAGATGAAGGAGAGGAATGTGAATAAGGTTCCTGGTTTTAGTCAAATACAAGTGAAGGGCAGGAGTCATGTATTTTTTGTGGGGGACAAATCTCATCCTCAAGCTGCTGAGATTTGGGGACTGCTTCAAGAGAAGCTCCTACCACACATGTGGGAGATGGGATACTCAAAACGGAATGCTTCTCAGATTGATCACCAGAAGAGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

678

Amino Acids

76.18

Weight (kDa)

9.2

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	164 - 193	4.5e-07	PPR repeat
PPR_2	PF13041	192 - 224	2.8e-07	PPR repeat family
PPR	PF01535	195 - 224	4e-07	PPR repeat
PPR_2	PF13041	223 - 256	5.7e-07	PPR repeat family
PPR_2	PF13041	445 - 493	3e-10	PPR repeat family
E_motif	PF20431	566 - 626	3.7e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18960 AT4G18960 AT4G18960 AT4G18960
fragaria_vesca	FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720
malus_domestica	MD05G1293700.v1.1 MD10G1271000.v1.1
prunus_persica	Prupe.3G111300_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1
pyrus_communis	pycom05g27100 pycom10g22680
rosa_chinensis	RchiOBHm_Chr5g0012431
rosa_laevigata	RLG00000031913
rosa_multiflora	Rmu_sc0003469.1_g000006 Rmu_sc0003469.1_g000007
rosa_roxburghii	Rroxscaffold_1G00064240
rosa_rugosa	Rorug05G0000900 Rorug05G0001000 Rorug05G0001100 Rorug05G0001200 Rorug05G0001300 Rorug05G0001300 Rorug05G0001400
rosa_samantha	Rh5AG095600 Rh5BG091800 Rh5CG104600 Rh5DG091200
rosa_wichuraiana	Rw5G008360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	233
Acc36I	ACCTGC	1 cut(s)	1393
AciI	CCGC	1 cut(s)	528
AclWI	GGATC	1 cut(s)	595
AcsI	RAATTY	2 cut(s)	142, 1808
AcuI	CTGAAG	1 cut(s)	820
AcvI	CACGTG	1 cut(s)	1793
AdeI	CACNNNGTG	1 cut(s)	646
AfaI	GTAC	3 cut(s)	926, 1623, 1767
AfiI	CCNNNNNNNGG	2 cut(s)	1086, 1287
AflIII	ACRYGT	2 cut(s)	1416, 1974
AhlI	ACTAGT	2 cut(s)	1264, 1597
AjnI	CCWGG	5 cut(s)	587, 603, 959, 1744, 1858
AjuI	GAANNNNNNNTTGG	2 cut(s)	127, 159
AleI	CACNNNNGTG	1 cut(s)	1975
Alw21I	GWGCWC	1 cut(s)	1178
Alw26I	GTCTC	2 cut(s)	310, 682
AlwI	GGATC	1 cut(s)	595
Ama87I	CYCGRG	1 cut(s)	1815
AoxI	GGCC	8 cut(s)	46, 375, 436, 543, 994, 1088, 1551, 1585
ApeKI	GCWGC	4 cut(s)	956, 1652, 1787, 1931
ApoI	RAATTY	2 cut(s)	142, 1808
ArsI	GACNNNNNNTTYG	2 cut(s)	1436, 1468
Asp700I	GAANNNNTTC	1 cut(s)	275
AspA2I	CCTAGG	1 cut(s)	49
AspLEI	GCGC	3 cut(s)	28, 246, 640
AspS9I	GGNCC	6 cut(s)	46, 498, 544, 1088, 1219, 1552
AsuC2I	CCSGG	1 cut(s)	514
AsuHPI	GGTGA	3 cut(s)	1025, 1382, 2012
AsuNHI	GCTAGC	1 cut(s)	1163
AvaI	CYCGRG	1 cut(s)	1815
AvaII	GGWCC	2 cut(s)	498, 1219
AvrII	CCTAGG	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	1178
BbrPI	CACGTG	1 cut(s)	1793
BbsI	GAAGAC	2 cut(s)	788, 1399
Bbv12I	GWGCWC	1 cut(s)	1178
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	4 cut(s)	943, 1639, 1774, 1918
BccI	CCATC	5 cut(s)	833, 1064, 1166, 1186, 1978
BceAI	ACGGC	2 cut(s)	423, 1640
BciT130I	CCWGG	5 cut(s)	589, 605, 961, 1746, 1860
BciVI	GTATCC	1 cut(s)	1982
BclI	TGATCA	5 cut(s)	321, 693, 715, 1318, 2017
BcnI	CCSGG	1 cut(s)	514
BcoDI	GTCTC	2 cut(s)	310, 682
BcuI	ACTAGT	2 cut(s)	1264, 1597
BfaI	CTAG	7 cut(s)	50, 1164, 1265, 1305, 1598, 1661, 1739
BfoI	RGCGCY	1 cut(s)	247
BfuAI	ACCTGC	1 cut(s)	1393
BfuI	GTATCC	1 cut(s)	1982
BisI	GCNGC	4 cut(s)	957, 1653, 1788, 1932
BlnI	CCTAGG	1 cut(s)	49
BlsI	GCNGC	4 cut(s)	958, 1654, 1789, 1933
BmcAI	AGTACT	1 cut(s)	926
Bme1390I	CCNGG	6 cut(s)	514, 589, 605, 961, 1746, 1860
Bme18I	GGWCC	2 cut(s)	498, 1219
BmeT110I	CYCGRG	1 cut(s)	1815
BmgT120I	GGNCC	6 cut(s)	46, 498, 544, 1088, 1219, 1552
BmiI	GGNNCC	6 cut(s)	66, 132, 764, 1432, 1688, 1857
BmrFI	CCNGG	6 cut(s)	514, 589, 605, 961, 1746, 1860
BmsI	GCATC	8 cut(s)	253, 289, 927, 986, 1113, 1352, 1620, 1639
BmtI	GCTAGC	1 cut(s)	1167
BpiI	GAAGAC	2 cut(s)	788, 1399
Bpu10I	CCTNAGC	3 cut(s)	123, 447, 1332
BpuEI	CTTGAG	1 cut(s)	1911
BpuMI	CCSGG	1 cut(s)	514
BsaAI	YACGTR	1 cut(s)	1793
BsaJI	CCNNGG	3 cut(s)	49, 604, 1690
Bsc4I	CCNNNNNNNGG	2 cut(s)	1086, 1287
Bse118I	RCCGGY	2 cut(s)	155, 1010
Bse1I	ACTGG	3 cut(s)	387, 501, 1221
Bse3DI	GCAATG	4 cut(s)	417, 1362, 1397, 1667
BseBI	CCWGG	5 cut(s)	589, 605, 961, 1746, 1860
BseDI	CCNNGG	3 cut(s)	49, 604, 1690
BseGI	GGATG	7 cut(s)	942, 1297, 1342, 1609, 1654, 1810, 1921
BseLI	CCNNNNNNNGG	2 cut(s)	1086, 1287
BseMI	GCAATG	4 cut(s)	417, 1362, 1397, 1667
BseMII	CTCAG	8 cut(s)	137, 176, 438, 535, 863, 1632, 1926, 2024
BseNI	ACTGG	3 cut(s)	387, 501, 1221
BseXI	GCAGC	4 cut(s)	943, 1639, 1774, 1918
BseYI	CCCAGC	1 cut(s)	1554
BsgI	GTGCAG	1 cut(s)	1773
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	8 cut(s)	48, 377, 438, 545, 996, 1090, 1553, 1587
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	1178
BsiHKCI	CYCGRG	1 cut(s)	1815
BsiSI	CCGG	3 cut(s)	156, 513, 1011
BslFI	GGGAC	4 cut(s)	82, 1165, 1925, 1959
BslI	CCNNNNNNNGG	2 cut(s)	1086, 1287
BsmAI	GTCTC	2 cut(s)	310, 682
BsmFI	GGGAC	4 cut(s)	82, 1165, 1925, 1959
BsmI	GAATGC	5 cut(s)	118, 862, 970, 1357, 2008
BsnI	GGCC	8 cut(s)	48, 377, 438, 545, 996, 1090, 1553, 1587
BsoBI	CYCGRG	1 cut(s)	1815
Bsp1286I	GDGCHC	1 cut(s)	1178
Bsp19I	CCATGG	1 cut(s)	1690
BspACI	CCGC	1 cut(s)	528
BspANI	GGCC	8 cut(s)	48, 377, 438, 545, 996, 1090, 1553, 1587
BspCNI	CTCAG	8 cut(s)	136, 177, 439, 534, 862, 1633, 1927, 2023
BspLI	GGNNCC	6 cut(s)	66, 132, 764, 1432, 1688, 1857
BspMI	ACCTGC	1 cut(s)	1393
BspOI	GCTAGC	1 cut(s)	1167
BspPI	GGATC	1 cut(s)	595
BsrDI	GCAATG	4 cut(s)	417, 1362, 1397, 1667
BsrFI	RCCGGY	2 cut(s)	155, 1010
BsrI	ACTGG	3 cut(s)	387, 501, 1221
BssAI	RCCGGY	2 cut(s)	155, 1010
BssECI	CCNNGG	3 cut(s)	49, 604, 1690
BssT1I	CCWWGG	2 cut(s)	49, 1690
Bst2UI	CCWGG	5 cut(s)	589, 605, 961, 1746, 1860
Bst4CI	ACNGT	7 cut(s)	8, 108, 224, 644, 676, 688, 1249
Bst6I	CTCTTC	3 cut(s)	746, 839, 2021
BstBAI	YACGTR	1 cut(s)	1793
BstC8I	GCNNGC	5 cut(s)	436, 616, 1165, 1206, 1635
BstDSI	CCRYGG	1 cut(s)	1690
BstEII	GGTNACC	1 cut(s)	1388
BstF5I	GGATG	7 cut(s)	942, 1297, 1342, 1609, 1654, 1810, 1921
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	3 cut(s)	28, 246, 640
BstMAI	GTCTC	2 cut(s)	310, 682
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 407, 965, 974, 1173
BstNI	CCWGG	5 cut(s)	589, 605, 961, 1746, 1860
BstNSI	RCATGY	3 cut(s)	26, 1420, 1978
BstPI	GGTNACC	1 cut(s)	1388
BstSCI	CCNGG	6 cut(s)	512, 587, 603, 959, 1744, 1858
BstV1I	GCAGC	4 cut(s)	943, 1639, 1774, 1918
BstV2I	GAAGAC	2 cut(s)	788, 1399
BstXI	CCANNNNNNTGG	1 cut(s)	1977
BsuI	GTATCC	1 cut(s)	1982
BsuRI	GGCC	8 cut(s)	48, 377, 438, 545, 996, 1090, 1553, 1587
BtgI	CCRYGG	1 cut(s)	1690
BtgZI	GCGATG	1 cut(s)	1144
BtsCI	GGATG	7 cut(s)	942, 1297, 1342, 1609, 1654, 1810, 1921
BtsIMutI	CAGTG	1 cut(s)	1214
BveI	ACCTGC	1 cut(s)	1393
Cac8I	GCNNGC	5 cut(s)	436, 616, 1165, 1206, 1635
CfoI	GCGC	3 cut(s)	28, 246, 640
Cfr10I	RCCGGY	2 cut(s)	155, 1010
Cfr13I	GGNCC	6 cut(s)	46, 498, 544, 1088, 1219, 1552
CseI	GACGC	2 cut(s)	303, 737
Csp6I	GTAC	3 cut(s)	925, 1622, 1766
CviQI	GTAC	3 cut(s)	925, 1622, 1766
DraIII	CACNNNGTG	1 cut(s)	646
Eam1104I	CTCTTC	3 cut(s)	746, 839, 2021
EarI	CTCTTC	3 cut(s)	746, 839, 2021
Ecl136II	GAGCTC	1 cut(s)	1176
Eco130I	CCWWGG	2 cut(s)	49, 1690
Eco147I	AGGCCT	1 cut(s)	996
Eco24I	GRGCYC	1 cut(s)	1178
Eco32I	GATATC	1 cut(s)	510
Eco47I	GGWCC	2 cut(s)	498, 1219
Eco53kI	GAGCTC	1 cut(s)	1176
Eco57I	CTGAAG	1 cut(s)	820
Eco72I	CACGTG	1 cut(s)	1793
Eco88I	CYCGRG	1 cut(s)	1815
Eco91I	GGTNACC	1 cut(s)	1388
EcoICRI	GAGCTC	1 cut(s)	1176
EcoO65I	GGTNACC	1 cut(s)	1388
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	5 cut(s)	587, 603, 959, 1744, 1858
EcoRV	GATATC	1 cut(s)	510
EcoT14I	CCWWGG	2 cut(s)	49, 1690
EcoT22I	ATGCAT	1 cut(s)	1399
EcoT38I	GRGCYC	1 cut(s)	1178
ErhI	CCWWGG	2 cut(s)	49, 1690
FaqI	GGGAC	4 cut(s)	82, 1165, 1925, 1959
FauNDI	CATATG	1 cut(s)	982
FbaI	TGATCA	5 cut(s)	321, 693, 715, 1318, 2017
Fnu4HI	GCNGC	4 cut(s)	957, 1653, 1788, 1932
FokI	GGATG	7 cut(s)	949, 1304, 1349, 1616, 1661, 1817, 1908
FriOI	GRGCYC	1 cut(s)	1178
Fsp4HI	GCNGC	4 cut(s)	957, 1653, 1788, 1932
FspBI	CTAG	7 cut(s)	50, 1164, 1265, 1305, 1598, 1661, 1739
GlaI	GCGC	3 cut(s)	27, 245, 639
GluI	GCNGC	4 cut(s)	957, 1653, 1788, 1932
GsaI	CCCAGC	1 cut(s)	1558
HaeII	RGCGCY	1 cut(s)	247
HaeIII	GGCC	8 cut(s)	48, 377, 438, 545, 996, 1090, 1553, 1587
HapII	CCGG	3 cut(s)	156, 513, 1011
HgaI	GACGC	2 cut(s)	303, 737
HhaI	GCGC	3 cut(s)	28, 246, 640
Hin6I	GCGC	3 cut(s)	26, 244, 638
HinP1I	GCGC	3 cut(s)	26, 244, 638
HincII	GTYRAC	3 cut(s)	538, 988, 1495
HindII	GTYRAC	3 cut(s)	538, 988, 1495
HinfI	GANTC	6 cut(s)	187, 404, 1057, 1461, 1525, 1891
HpaII	CCGG	3 cut(s)	156, 513, 1011
HphI	GGTGA	3 cut(s)	1025, 1382, 2012
Hpy166II	GTNNAC	5 cut(s)	331, 538, 988, 1495, 1576
Hpy188I	TCNGA	7 cut(s)	852, 936, 1062, 1122, 1506, 1642, 2013
Hpy188III	TCNNGA	4 cut(s)	1281, 1428, 1733, 1955
Hpy8I	GTNNAC	5 cut(s)	331, 538, 988, 1495, 1576
Hpy99I	CGWCG	5 cut(s)	165, 168, 171, 284, 552
HpyAV	CCTTC	6 cut(s)	25, 986, 1609, 1639, 1828, 1876
HpyCH4III	ACNGT	7 cut(s)	8, 108, 224, 644, 676, 688, 1249
HpyCH4IV	ACGT	1 cut(s)	1792
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 407, 965, 974, 1173
HpySE526I	ACGT	1 cut(s)	1792
HspAI	GCGC	3 cut(s)	26, 244, 638
Ksp22I	TGATCA	5 cut(s)	321, 693, 715, 1318, 2017
LmnI	GCTCC	6 cut(s)	12, 130, 1195, 1430, 1664, 1968
Lsp1109I	GCAGC	4 cut(s)	943, 1639, 1774, 1918
LweI	GCATC	8 cut(s)	253, 289, 927, 986, 1113, 1352, 1620, 1639
MaeI	CTAG	7 cut(s)	50, 1164, 1265, 1305, 1598, 1661, 1739
MaeII	ACGT	1 cut(s)	1792
MaeIII	GTNAC	7 cut(s)	218, 608, 880, 1048, 1267, 1294, 1388
MboII	GAAGA	6 cut(s)	341, 349, 733, 788, 826, 1399
MhlI	GDGCHC	1 cut(s)	1178
MluCI	AATT	8 cut(s)	142, 719, 861, 1116, 1516, 1779, 1808, 2032
MlyI	GAGTC	3 cut(s)	196, 1470, 1900
MmeI	TCCRAC	1 cut(s)	1438
Mph1103I	ATGCAT	1 cut(s)	1399
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	4 cut(s)	651, 801, 1106, 1421
MslI	CAYNNNNRTG	3 cut(s)	1383, 1533, 1975
MspI	CCGG	3 cut(s)	156, 513, 1011
MspR9I	CCNGG	6 cut(s)	514, 589, 605, 961, 1746, 1860
Mva1269I	GAATGC	5 cut(s)	118, 862, 970, 1357, 2008
MvaI	CCWGG	5 cut(s)	589, 605, 961, 1746, 1860
MwoI	GCNNNNNNNGC	5 cut(s)	54, 407, 965, 974, 1173
NciI	CCSGG	1 cut(s)	514
NcoI	CCATGG	1 cut(s)	1690
NdeI	CATATG	1 cut(s)	982
NheI	GCTAGC	1 cut(s)	1163
NlaIV	GGNNCC	6 cut(s)	66, 132, 764, 1432, 1688, 1857
NmeAIII	GCCGAG	1 cut(s)	1613
NmuCI	GTSAC	2 cut(s)	1267, 1388
NsiI	ATGCAT	1 cut(s)	1399
NspI	RCATGY	3 cut(s)	26, 1420, 1978
OliI	CACNNNNGTG	1 cut(s)	1975
PaeR7I	CTCGAG	1 cut(s)	1815
PceI	AGGCCT	1 cut(s)	996
PciI	ACATGT	2 cut(s)	1416, 1974
PcsI	WCGNNNNNNNCGW	1 cut(s)	166
PctI	GAATGC	5 cut(s)	118, 862, 970, 1357, 2008
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	3 cut(s)	404, 1057, 1525
PflFI	GACNNNGTC	2 cut(s)	77, 1247
PfoI	TCCNGGA	1 cut(s)	587
PkrI	GCNGC	4 cut(s)	958, 1654, 1789, 1933
PleI	GAGTC	3 cut(s)	195, 1469, 1899
PmaCI	CACGTG	1 cut(s)	1793
PmlI	CACGTG	1 cut(s)	1793
PpsI	GAGTC	3 cut(s)	195, 1469, 1899
Ppu21I	YACGTR	1 cut(s)	1793
PscI	ACATGT	2 cut(s)	1416, 1974
PsiI	TTATAA	1 cut(s)	233
Psp124BI	GAGCTC	1 cut(s)	1178
Psp6I	CCWGG	5 cut(s)	587, 603, 959, 1744, 1858
PspCI	CACGTG	1 cut(s)	1793
PspEI	GGTNACC	1 cut(s)	1388
PspFI	CCCAGC	1 cut(s)	1554
PspGI	CCWGG	5 cut(s)	587, 603, 959, 1744, 1858
PspN4I	GGNNCC	6 cut(s)	66, 132, 764, 1432, 1688, 1857
PspPI	GGNCC	6 cut(s)	46, 498, 544, 1088, 1219, 1552
PspXI	VCTCGAGB	1 cut(s)	1815
PsyI	GACNNNGTC	2 cut(s)	77, 1247
RsaI	GTAC	3 cut(s)	926, 1623, 1767
RsaNI	GTAC	3 cut(s)	925, 1622, 1766
RseI	CAYNNNNRTG	3 cut(s)	1383, 1533, 1975
SacI	GAGCTC	1 cut(s)	1178
SaqAI	TTAA	4 cut(s)	651, 801, 1106, 1421
SatI	GCNGC	4 cut(s)	957, 1653, 1788, 1932
Sau96I	GGNCC	6 cut(s)	46, 498, 544, 1088, 1219, 1552
ScaI	AGTACT	1 cut(s)	926
SchI	GAGTC	3 cut(s)	196, 1470, 1900
ScrFI	CCNGG	6 cut(s)	514, 589, 605, 961, 1746, 1860
SduI	GDGCHC	1 cut(s)	1178
SfaNI	GCATC	8 cut(s)	253, 289, 927, 986, 1113, 1352, 1620, 1639
Sfr274I	CTCGAG	1 cut(s)	1815
SinI	GGWCC	2 cut(s)	498, 1219
SlaI	CTCGAG	1 cut(s)	1815
SmiMI	CAYNNNNRTG	3 cut(s)	1383, 1533, 1975
SmlI	CTYRAG	2 cut(s)	1815, 1926
SmoI	CTYRAG	2 cut(s)	1815, 1926
SpeI	ACTAGT	2 cut(s)	1264, 1597
Sse9I	AATT	8 cut(s)	142, 719, 861, 1116, 1516, 1779, 1808, 2032
SseBI	AGGCCT	1 cut(s)	996
SsiI	CCGC	1 cut(s)	528
SspI	AATATT	2 cut(s)	394, 1699
SspMI	CTAG	7 cut(s)	50, 1164, 1265, 1305, 1598, 1661, 1739
SstI	GAGCTC	1 cut(s)	1178
StuI	AGGCCT	1 cut(s)	996
StyD4I	CCNGG	6 cut(s)	512, 587, 603, 959, 1744, 1858
StyI	CCWWGG	2 cut(s)	49, 1690
TaaI	ACNGT	7 cut(s)	8, 108, 224, 644, 676, 688, 1249
TaiI	ACGT	1 cut(s)	1795
TaqI	TCGA	3 cut(s)	146, 279, 1816
TasI	AATT	8 cut(s)	142, 719, 861, 1116, 1516, 1779, 1808, 2032
TatI	WGTACW	2 cut(s)	924, 1765
TfiI	GAWTC	3 cut(s)	404, 1057, 1525
Tru1I	TTAA	4 cut(s)	651, 801, 1106, 1421
Tru9I	TTAA	4 cut(s)	651, 801, 1106, 1421
TscAI	CASTG	1 cut(s)	1221
TseFI	GTSAC	2 cut(s)	1267, 1388
TseI	GCWGC	4 cut(s)	956, 1652, 1787, 1931
Tsp45I	GTSAC	2 cut(s)	1267, 1388
TspDTI	ATGAA	5 cut(s)	648, 1018, 1538, 1821, 1847
TspGWI	ACGGA	3 cut(s)	775, 1395, 2014
TspRI	CASTG	1 cut(s)	1221
Tth111I	GACNNNGTC	2 cut(s)	77, 1247
VpaK11BI	GGWCC	2 cut(s)	498, 1219
XapI	RAATTY	2 cut(s)	142, 1808
XceI	RCATGY	3 cut(s)	26, 1420, 1978
XhoI	CTCGAG	1 cut(s)	1815
XmaJI	CCTAGG	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	7 cut(s)	50, 1164, 1265, 1305, 1598, 1661, 1739
ZrmI	AGTACT	1 cut(s)	926
Zsp2I	ATGCAT	1 cut(s)	1399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.