Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003087

Physical Location & Seq

Genomic Coordinates Forward (+)

3456499 .. 3464114

Gene Structure 7616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G070500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCCTATGAAAACAAATCCATGTCTCTGGACTCTCCCCAAAGAAAATTGGGTAGGGGAAAGATCGAGATCAAGCGGATCGAAAACACAACAAACCGTCAAGTCACCTTCTGCAAAAGGCGCAATGGGTTGCTCAAGAAGGCCTATGAACTCTCTGTACTCTGTGATGCAGAGGTTGCTCTCATAGTCTTCTCTAACCGTGGCCGACTTTATGAGTATGCCAACAACAGTGTTAAAGAAACAATTGAGAGGTACAAGAAGGCATGCGCAGAGTCTACAAATACCGGATCTGTTTCCGAAGCTAGTACTCAGTACTACCAACAAGAAGCTGCGAAACTGCGCGCTCAGATAGGGAATTTGCAGAACTCAAGCAGGCATATGATGGGCGAGTCATTGAGTTCTATGAATATGAAAGACCTGAAGAATCTGGAGAGTAAACTAGAGAAAGGAATCAACAGAATCAGATCCAAGAAGAATGAACTCTTGTTTGCCGAAATTGAGTACATGCAGAAAAGGGAAATTGACTTGCATAACAACAACCAGCTCCTACGAGCAAAGATAGCTGAGAATGAGAGGAGCCAGCAAAACATAAATGTGATGGCTGGAGGGGGAAGTTATGAGATCATGCAGTCTCAGCCATATGACTCTCGGAACTATTTTCAAGTGAATGCATTACAACCCAATCATCAGTACAATTCACGCCAAGATCCGATGGCCCTTCAATTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

244

Amino Acids

27.99

Weight (kDa)

9.44

Isoelectric Point (pI)

60.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18960 AT4G18960 AT4G18960 AT4G18960
fragaria_vesca	FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720
malus_domestica	MD05G1293700.v1.1 MD10G1271000.v1.1
prunus_persica	Prupe.3G111300_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1
pyrus_communis	pycom05g27100 pycom10g22680
rosa_chinensis	RchiOBHm_Chr5g0012431
rosa_laevigata	RLG00000031913
rosa_multiflora	Rmu_sc0003469.1_g000006 Rmu_sc0003469.1_g000007
rosa_roxburghii	Rroxscaffold_1G00064240
rosa_rugosa	Rorug05G0000900 Rorug05G0001000 Rorug05G0001100 Rorug05G0001200 Rorug05G0001300 Rorug05G0001300 Rorug05G0001400
rosa_samantha	Rh5AG095600 Rh5BG091800 Rh5CG104600 Rh5DG091200
rosa_wichuraiana	Rw5G008360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	275
AccII	CGCG	1 cut(s)	342
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	4 cut(s)	86, 295, 459, 701
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	6 cut(s)	159, 254, 307, 314, 503, 692
AgsI	TTSAA	2 cut(s)	662, 722
AluBI	AGCT	4 cut(s)	302, 329, 544, 563
AluI	AGCT	4 cut(s)	302, 329, 544, 563
Alw26I	GTCTC	2 cut(s)	30, 636
AlwI	GGATC	4 cut(s)	86, 295, 459, 701
AoxI	GGCC	4 cut(s)	3, 141, 202, 714
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	355
AspLEI	GCGC	4 cut(s)	123, 269, 342, 344
AspS9I	GGNCC	1 cut(s)	715
AsuHPI	GGTGA	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	181
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	3 cut(s)	376, 592, 706
BcoDI	GTCTC	2 cut(s)	30, 636
BfaI	CTAG	2 cut(s)	303, 440
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
BmcAI	AGTACT	2 cut(s)	307, 314
BmgT120I	GGNCC	1 cut(s)	715
BmiI	GGNNCC	1 cut(s)	578
BmsI	GCATC	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	181
BpmI	CTGGAG	2 cut(s)	449, 624
BpuEI	CTTGAG	2 cut(s)	119, 352
BsaBI	GATNNNNATC	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	199
BsaWI	WCCGGW	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	130
Bse8I	GATNNNNATC	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	199
BseJI	GATNNNNATC	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	4 cut(s)	323, 359, 555, 647
BsePI	GCGCGC	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	589
BseXI	GCAGC	1 cut(s)	316
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	4 cut(s)	5, 143, 204, 716
BsiSI	CCGG	1 cut(s)	285
BsmAI	GTCTC	2 cut(s)	30, 636
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	4 cut(s)	5, 143, 204, 716
Bsp143I	GATC	7 cut(s)	63, 69, 78, 287, 464, 621, 706
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	4 cut(s)	5, 143, 204, 716
BspCNI	CTCAG	4 cut(s)	322, 358, 556, 646
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	578
BspPI	GGATC	4 cut(s)	86, 295, 459, 701
BsrDI	GCAATG	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	199
BssHII	GCGCGC	1 cut(s)	340
BssMI	GATC	7 cut(s)	63, 69, 78, 287, 464, 621, 706
Bst4CI	ACNGT	3 cut(s)	98, 200, 230
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstC8I	GCNNGC	4 cut(s)	265, 342, 374, 581
BstDEI	CTNAG	4 cut(s)	309, 345, 564, 633
BstDSI	CCRYGG	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	342
BstHHI	GCGC	4 cut(s)	123, 269, 342, 344
BstKTI	GATC	7 cut(s)	66, 72, 81, 290, 467, 624, 709
BstMAI	GTCTC	2 cut(s)	30, 636
BstMBI	GATC	7 cut(s)	63, 69, 78, 287, 464, 621, 706
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 176, 560, 634
BstNSI	RCATGY	2 cut(s)	267, 508
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	3 cut(s)	287, 464, 706
BstXI	CCANNNNNNTGG	1 cut(s)	28
BstYI	RGATCY	3 cut(s)	287, 464, 706
BsuRI	GGCC	4 cut(s)	5, 143, 204, 716
BtgI	CCRYGG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	4 cut(s)	265, 342, 374, 581
CfoI	GCGC	4 cut(s)	123, 269, 342, 344
Cfr13I	GGNCC	1 cut(s)	715
Csp6I	GTAC	6 cut(s)	158, 253, 306, 313, 502, 691
CviAII	CATG	4 cut(s)	22, 264, 505, 625
CviQI	GTAC	6 cut(s)	158, 253, 306, 313, 502, 691
DdeI	CTNAG	4 cut(s)	309, 345, 564, 633
DpnI	GATC	7 cut(s)	65, 71, 80, 289, 466, 623, 708
DpnII	GATC	7 cut(s)	63, 69, 78, 287, 464, 621, 706
EaeI	YGGCCR	1 cut(s)	202
Eco147I	AGGCCT	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	440
EcoT22I	ATGCAT	1 cut(s)	673
FaeI	CATG	4 cut(s)	25, 267, 508, 628
FatI	CATG	4 cut(s)	21, 263, 504, 624
FauNDI	CATATG	2 cut(s)	378, 640
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	2 cut(s)	303, 440
FspI	TGCGCA	1 cut(s)	268
GlaI	GCGC	4 cut(s)	122, 268, 341, 343
GluI	GCNGC	1 cut(s)	330
GsuI	CTGGAG	2 cut(s)	449, 624
HaeIII	GGCC	4 cut(s)	5, 143, 204, 716
HapII	CCGG	1 cut(s)	285
HhaI	GCGC	4 cut(s)	123, 269, 342, 344
Hin1II	CATG	4 cut(s)	25, 267, 508, 628
Hin6I	GCGC	4 cut(s)	121, 267, 340, 342
HinP1I	GCGC	4 cut(s)	121, 267, 340, 342
HinfI	GANTC	7 cut(s)	32, 272, 389, 424, 450, 459, 644
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	2 cut(s)	276, 437
Hpy188I	TCNGA	5 cut(s)	298, 348, 464, 651, 711
Hpy188III	TCNNGA	4 cut(s)	29, 67, 136, 428
Hpy8I	GTNNAC	2 cut(s)	276, 437
HpyAV	CCTTC	4 cut(s)	118, 133, 253, 728
HpyCH4III	ACNGT	3 cut(s)	98, 200, 230
HpyCH4V	TGCA	7 cut(s)	114, 170, 361, 508, 529, 628, 671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 176, 560, 634
HpyF3I	CTNAG	4 cut(s)	309, 345, 564, 633
Hsp92II	CATG	4 cut(s)	25, 267, 508, 628
HspAI	GCGC	4 cut(s)	121, 267, 340, 342
Kzo9I	GATC	7 cut(s)	63, 69, 78, 287, 464, 621, 706
LmnI	GCTCC	2 cut(s)	549, 576
LpnPI	CCDG	8 cut(s)	14, 298, 358, 413, 431, 554, 588, 593
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	2 cut(s)	303, 440
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	7 cut(s)	65, 71, 80, 289, 466, 623, 708
MboI	GATC	7 cut(s)	63, 69, 78, 287, 464, 621, 706
MboII	GAAGA	3 cut(s)	181, 433, 484
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	3 cut(s)	287, 464, 706
MluCI	AATT	7 cut(s)	47, 243, 355, 495, 519, 694, 722
MlyI	GAGTC	4 cut(s)	26, 281, 398, 638
MnlI	CCTC	4 cut(s)	166, 243, 567, 599
Mph1103I	ATGCAT	1 cut(s)	673
MseI	TTAA	2 cut(s)	234, 730
MslI	CAYNNNNRTG	1 cut(s)	593
MspI	CCGG	1 cut(s)	285
MunI	CAATTG	1 cut(s)	243
Mva1269I	GAATGC	1 cut(s)	673
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	4 cut(s)	120, 176, 560, 634
NdeI	CATATG	2 cut(s)	378, 640
NdeII	GATC	7 cut(s)	63, 69, 78, 287, 464, 621, 706
NlaIII	CATG	4 cut(s)	25, 267, 508, 628
NlaIV	GGNNCC	1 cut(s)	578
NmuCI	GTSAC	1 cut(s)	103
NsbI	TGCGCA	1 cut(s)	268
NsiI	ATGCAT	1 cut(s)	673
NspI	RCATGY	2 cut(s)	267, 508
PaeI	GCATGC	1 cut(s)	267
PauI	GCGCGC	1 cut(s)	340
PceI	AGGCCT	1 cut(s)	143
PctI	GAATGC	1 cut(s)	673
PfeI	GAWTC	3 cut(s)	424, 450, 459
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	4 cut(s)	26, 280, 397, 638
PpsI	GAGTC	4 cut(s)	26, 280, 397, 638
PspN4I	GGNNCC	1 cut(s)	578
PspPI	GGNCC	1 cut(s)	715
PsrI	GAACNNNNNNTAC	2 cut(s)	141, 173
PsuI	RGATCY	3 cut(s)	287, 464, 706
PteI	GCGCGC	1 cut(s)	340
RsaI	GTAC	6 cut(s)	159, 254, 307, 314, 503, 692
RsaNI	GTAC	6 cut(s)	158, 253, 306, 313, 502, 691
RseI	CAYNNNNRTG	1 cut(s)	593
SaqAI	TTAA	2 cut(s)	234, 730
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	7 cut(s)	63, 69, 78, 287, 464, 621, 706
Sau96I	GGNCC	1 cut(s)	715
ScaI	AGTACT	2 cut(s)	307, 314
SchI	GAGTC	4 cut(s)	26, 281, 398, 638
SetI	ASST	8 cut(s)	110, 177, 254, 304, 331, 420, 546, 565
SfaNI	GCATC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	593
SmlI	CTYRAG	2 cut(s)	134, 367
SmoI	CTYRAG	2 cut(s)	134, 367
SphI	GCATGC	1 cut(s)	267
Sse9I	AATT	7 cut(s)	47, 243, 355, 495, 519, 694, 722
SseBI	AGGCCT	1 cut(s)	143
SsiI	CCGC	1 cut(s)	76
SspMI	CTAG	2 cut(s)	303, 440
StuI	AGGCCT	1 cut(s)	143
TaaI	ACNGT	3 cut(s)	98, 200, 230
TaqI	TCGA	2 cut(s)	66, 81
TasI	AATT	7 cut(s)	47, 243, 355, 495, 519, 694, 722
TatI	WGTACW	5 cut(s)	157, 305, 312, 501, 690
TfiI	GAWTC	3 cut(s)	424, 450, 459
Tru1I	TTAA	2 cut(s)	234, 730
Tru9I	TTAA	2 cut(s)	234, 730
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	5 cut(s)	24, 162, 419, 425, 492
TspRI	CASTG	1 cut(s)	235
XapI	RAATTY	1 cut(s)	355
XceI	RCATGY	2 cut(s)	267, 508
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	2 cut(s)	303, 440
ZrmI	AGTACT	2 cut(s)	307, 314
Zsp2I	ATGCAT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.