Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003087

Physical Location & Seq

Genomic Coordinates Reverse (-)

36314916 .. 36323199

Gene Structure 8284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1271000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGACTCTCCCCAGAGAAAATTGGGTAGGGGAAAGATCGAGATTAAGCGGATCGAAAACACAACGAATCGTCAAGTGACCTTCTGCAAGAGGCGCAATGGGTTGCTCAAGAAGGCCTATGAACTCTCTGTGCTCTGTGATGCAGAGGTTGCTCTCATAGTCTTCTCTAACCGTGGCCGCCTCTATGAGTATGCCAACAATAGTGTTAAAGGAACAATTGAGAGGTACAAGAAGGCAAGTGCAGATTCTTCAAATACTGGATCAGTTTCTGAAGCTAGTACTCAGTACTACCAGCAAGAAGCTGCGAAATTGCGTGCGCAGATAGTGAAATTGCAGAATGACAACCGGAATATGATGGGTGATGCATTGAGTAGTATGTCTGTCAAGGACCTGAAGAGCCTGGAGAATAAACTGGAGAAAGCAATTAGCAGAATCCGATCCAAAAAGAATGAGCTCTTGTTTGCCGAAATTGAGTACATGCAGAAAAGGGAACTGGACTTGCACAACAATAACCAGCTCCTACGAGCAAAGATAGCTGAGAATGAGAGGGGCCAGCAGAACATAAATGTGATGGCTGGAGGAGGAAGCTATGAGATCCTGCAGTCTCAGCCATACGACTCTCGGGACTATTTCCAAGTGAACGTGTTACAACCCAATCATCACCACAATCCCCGCCACGATCAGATTTCCCTTCAATTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

235

Amino Acids

26.85

Weight (kDa)

9.53

Isoelectric Point (pI)

56.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	17 - 64	1.4e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	92 - 178	2.9e-28	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18960 AT4G18960 AT4G18960 AT4G18960
fragaria_vesca	FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720
malus_domestica	MD05G1293700.v1.1 MD10G1271000.v1.1
prunus_persica	Prupe.3G111300_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1
pyrus_communis	pycom05g27100 pycom10g22680
rosa_chinensis	RchiOBHm_Chr5g0012431
rosa_laevigata	RLG00000031913
rosa_multiflora	Rmu_sc0003469.1_g000006 Rmu_sc0003469.1_g000007
rosa_roxburghii	Rroxscaffold_1G00064240
rosa_rugosa	Rorug05G0000900 Rorug05G0001000 Rorug05G0001100 Rorug05G0001200 Rorug05G0001300 Rorug05G0001300 Rorug05G0001400
rosa_samantha	Rh5AG095600 Rh5BG091800 Rh5CG104600 Rh5DG091200
rosa_wichuraiana	Rw5G008360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	318
AciI	CCGC	3 cut(s)	49, 178, 673
AclWI	GGATC	4 cut(s)	59, 268, 432, 589
AcoI	YGGCCR	1 cut(s)	175
AcuI	CTGAAG	2 cut(s)	291, 413
AfaI	GTAC	4 cut(s)	227, 280, 287, 476
AflIII	ACRYGT	1 cut(s)	642
AgsI	TTSAA	2 cut(s)	252, 695
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	6 cut(s)	275, 302, 454, 517, 536, 588
AluI	AGCT	6 cut(s)	275, 302, 454, 517, 536, 588
Alw21I	GWGCWC	2 cut(s)	135, 456
Alw26I	GTCTC	1 cut(s)	609
AlwI	GGATC	4 cut(s)	59, 268, 432, 589
AlwNI	CAGNNNCTG	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	621
AoxI	GGCC	3 cut(s)	114, 175, 550
ApeKI	GCWGC	1 cut(s)	302
AspLEI	GCGC	2 cut(s)	96, 319
AspS9I	GGNCC	2 cut(s)	388, 550
AsuHPI	GGTGA	2 cut(s)	371, 653
AvaI	CYCGRG	1 cut(s)	621
AvaII	GGWCC	1 cut(s)	388
BanII	GRGCYC	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	154
Bbv12I	GWGCWC	2 cut(s)	135, 456
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	2 cut(s)	349, 565
BciT130I	CCWGG	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	609
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	599
BisI	GCNGC	2 cut(s)	178, 303
BlsI	GCNGC	2 cut(s)	179, 304
BmcAI	AGTACT	2 cut(s)	280, 287
Bme1390I	CCNGG	1 cut(s)	401
Bme18I	GGWCC	1 cut(s)	388
BmeT110I	CYCGRG	1 cut(s)	621
BmgT120I	GGNCC	2 cut(s)	388, 550
BmiI	GGNNCC	1 cut(s)	551
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	2 cut(s)	130, 352
BpiI	GAAGAC	1 cut(s)	154
BpmI	CTGGAG	3 cut(s)	422, 434, 597
BpuEI	CTTGAG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	172
BsaWI	WCCGGW	1 cut(s)	345
Bse1I	ACTGG	3 cut(s)	262, 417, 498
Bse3DI	GCAATG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	103
BseMII	CTCAG	3 cut(s)	296, 528, 620
BseNI	ACTGG	3 cut(s)	262, 417, 498
BseRI	GAGGAG	1 cut(s)	594
BseXI	GCAGC	1 cut(s)	289
BsgI	GTGCAG	1 cut(s)	261
BshFI	GGCC	3 cut(s)	116, 177, 552
BsiHKAI	GWGCWC	2 cut(s)	135, 456
BsiHKCI	CYCGRG	1 cut(s)	621
BsiSI	CCGG	1 cut(s)	346
BslFI	GGGAC	1 cut(s)	638
BsmAI	GTCTC	1 cut(s)	609
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	3 cut(s)	116, 177, 552
BsoBI	CYCGRG	1 cut(s)	621
Bsp1286I	GDGCHC	2 cut(s)	135, 456
Bsp143I	GATC	6 cut(s)	36, 51, 260, 437, 594, 679
BspACI	CCGC	3 cut(s)	49, 178, 673
BspANI	GGCC	3 cut(s)	116, 177, 552
BspCNI	CTCAG	3 cut(s)	295, 529, 619
BspLI	GGNNCC	1 cut(s)	551
BspMAI	CTGCAG	1 cut(s)	603
BspPI	GGATC	4 cut(s)	59, 268, 432, 589
BspQI	GCTCTTC	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	103
BsrI	ACTGG	3 cut(s)	262, 417, 498
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	6 cut(s)	36, 51, 260, 437, 594, 679
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	389
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	315, 554
BstDEI	CTNAG	3 cut(s)	282, 537, 606
BstDSI	CCRYGG	1 cut(s)	172
BstHHI	GCGC	2 cut(s)	96, 319
BstKTI	GATC	6 cut(s)	39, 54, 263, 440, 597, 682
BstMAI	GTCTC	1 cut(s)	609
BstMBI	GATC	6 cut(s)	36, 51, 260, 437, 594, 679
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 149, 533, 607
BstNI	CCWGG	1 cut(s)	401
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	1 cut(s)	599
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	594
BstYI	RGATCY	1 cut(s)	594
BsuRI	GGCC	3 cut(s)	116, 177, 552
BtgI	CCRYGG	1 cut(s)	172
Cac8I	GCNNGC	2 cut(s)	315, 554
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	2 cut(s)	96, 319
Cfr13I	GGNCC	2 cut(s)	388, 550
Csp6I	GTAC	4 cut(s)	226, 279, 286, 475
CviAII	CATG	1 cut(s)	478
CviQI	GTAC	4 cut(s)	226, 279, 286, 475
DdeI	CTNAG	3 cut(s)	282, 537, 606
DpnI	GATC	6 cut(s)	38, 53, 262, 439, 596, 681
DpnII	GATC	6 cut(s)	36, 51, 260, 437, 594, 679
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
Ecl136II	GAGCTC	1 cut(s)	454
Eco147I	AGGCCT	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	388
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	2 cut(s)	291, 413
Eco88I	CYCGRG	1 cut(s)	621
EcoICRI	GAGCTC	1 cut(s)	454
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	399
EcoT22I	ATGCAT	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	456
FaeI	CATG	1 cut(s)	481
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	1 cut(s)	477
FauI	CCCGC	1 cut(s)	680
Fnu4HI	GCNGC	2 cut(s)	178, 303
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	2 cut(s)	178, 303
FspBI	CTAG	1 cut(s)	276
FspI	TGCGCA	1 cut(s)	318
GlaI	GCGC	2 cut(s)	95, 318
GluI	GCNGC	2 cut(s)	178, 303
GsuI	CTGGAG	3 cut(s)	422, 434, 597
HaeIII	GGCC	3 cut(s)	116, 177, 552
HapII	CCGG	1 cut(s)	346
HhaI	GCGC	2 cut(s)	96, 319
Hin1II	CATG	1 cut(s)	481
Hin6I	GCGC	2 cut(s)	94, 317
HinP1I	GCGC	2 cut(s)	94, 317
HinfI	GANTC	5 cut(s)	5, 67, 245, 432, 617
HpaII	CCGG	1 cut(s)	346
HphI	GGTGA	2 cut(s)	371, 653
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	3 cut(s)	271, 437, 684
Hpy188III	TCNNGA	3 cut(s)	40, 109, 623
Hpy8I	GTNNAC	1 cut(s)	640
HpyAV	CCTTC	4 cut(s)	91, 106, 226, 701
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4IV	ACGT	1 cut(s)	642
HpyCH4V	TGCA	8 cut(s)	87, 143, 242, 334, 365, 481, 502, 601
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 149, 533, 607
HpyF3I	CTNAG	3 cut(s)	282, 537, 606
HpySE526I	ACGT	1 cut(s)	642
Hsp92II	CATG	1 cut(s)	481
HspAI	GCGC	2 cut(s)	94, 317
Kzo9I	GATC	6 cut(s)	36, 51, 260, 437, 594, 679
LguI	GCTCTTC	1 cut(s)	389
LmnI	GCTCC	1 cut(s)	522
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	2 cut(s)	130, 352
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	2 cut(s)	76, 645
MalI	GATC	6 cut(s)	38, 53, 262, 439, 596, 681
MboI	GATC	6 cut(s)	36, 51, 260, 437, 594, 679
MboII	GAAGA	3 cut(s)	154, 240, 406
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	1 cut(s)	594
MhlI	GDGCHC	2 cut(s)	135, 456
MluCI	AATT	7 cut(s)	20, 216, 308, 329, 423, 468, 695
MlyI	GAGTC	1 cut(s)	611
MnlI	CCTC	7 cut(s)	84, 139, 191, 216, 540, 572, 575
Mph1103I	ATGCAT	1 cut(s)	367
MseI	TTAA	3 cut(s)	45, 207, 703
MslI	CAYNNNNRTG	1 cut(s)	566
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	1 cut(s)	401
MunI	CAATTG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	4 cut(s)	93, 149, 533, 607
NdeII	GATC	6 cut(s)	36, 51, 260, 437, 594, 679
NlaIII	CATG	1 cut(s)	481
NlaIV	GGNNCC	1 cut(s)	551
NmuCI	GTSAC	1 cut(s)	76
NsbI	TGCGCA	1 cut(s)	318
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	1 cut(s)	481
PceI	AGGCCT	1 cut(s)	116
PciSI	GCTCTTC	1 cut(s)	389
PfeI	GAWTC	3 cut(s)	67, 245, 432
PkrI	GCNGC	2 cut(s)	179, 304
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
PpuMI	RGGWCCY	1 cut(s)	388
Psp124BI	GAGCTC	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	551
PspPI	GGNCC	2 cut(s)	388, 550
PspPPI	RGGWCCY	1 cut(s)	388
PstI	CTGCAG	1 cut(s)	603
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	594
RsaI	GTAC	4 cut(s)	227, 280, 287, 476
RsaNI	GTAC	4 cut(s)	226, 279, 286, 475
RseI	CAYNNNNRTG	1 cut(s)	566
SacI	GAGCTC	1 cut(s)	456
SapI	GCTCTTC	1 cut(s)	389
SaqAI	TTAA	3 cut(s)	45, 207, 703
SatI	GCNGC	2 cut(s)	178, 303
Sau3AI	GATC	6 cut(s)	36, 51, 260, 437, 594, 679
Sau96I	GGNCC	2 cut(s)	388, 550
ScaI	AGTACT	2 cut(s)	280, 287
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	2 cut(s)	135, 456
SfaNI	GCATC	2 cut(s)	130, 352
SfcI	CTRYAG	1 cut(s)	599
SinI	GGWCC	1 cut(s)	388
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	7 cut(s)	20, 216, 308, 329, 423, 468, 695
SseBI	AGGCCT	1 cut(s)	116
SsiI	CCGC	3 cut(s)	49, 178, 673
SspMI	CTAG	1 cut(s)	276
SstI	GAGCTC	1 cut(s)	456
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	173
TaiI	ACGT	1 cut(s)	645
TaqI	TCGA	2 cut(s)	39, 54
TasI	AATT	7 cut(s)	20, 216, 308, 329, 423, 468, 695
TatI	WGTACW	3 cut(s)	278, 285, 474
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	3 cut(s)	67, 245, 432
Tru1I	TTAA	3 cut(s)	45, 207, 703
Tru9I	TTAA	3 cut(s)	45, 207, 703
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	388
XceI	RCATGY	1 cut(s)	481
XspI	CTAG	1 cut(s)	276
ZrmI	AGTACT	2 cut(s)	280, 287
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.