Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003087

Physical Location & Seq

Genomic Coordinates Reverse (-)

28144479 .. 28146094

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCCTATCAAGGACCTGAAGAGCCTGGAGAGTAAACTAGAGAAAGGAATTAGCAGAATCCGATCCAAAAAGAATGAGCTCTTGTTTGCCGAAATTGAGTACATGCAGAAAAGGGAACTGGACTTGCACAGCAATAACCAGCTCCTACGAGCAAAGATAGCTGAGAATGAGAGGGGCCAGCAGAACATAAATGTGATGGCTGGAGGAGGACCTTCAAGCTATGACTTCCTGCAGTCTCAGCCATACGACTCTCGGAACTATTTCCAAGTGAACGCGTTACAACCCAATCATCAGTACAATCCCCGCCACGATCAGATTTCTCTTCAATTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

112

Amino Acids

12.92

Weight (kDa)

8.93

Isoelectric Point (pI)

66.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	2 - 53	2.5e-14	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18960 AT4G18960 AT4G18960 AT4G18960
fragaria_vesca	FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720
malus_domestica	MD05G1293700.v1.1 MD10G1271000.v1.1
prunus_persica	Prupe.3G111300_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1
pyrus_communis	pycom05g27100 pycom10g22680
rosa_chinensis	RchiOBHm_Chr5g0012431
rosa_laevigata	RLG00000031913
rosa_multiflora	Rmu_sc0003469.1_g000006 Rmu_sc0003469.1_g000007
rosa_roxburghii	Rroxscaffold_1G00064240
rosa_rugosa	Rorug05G0000900 Rorug05G0001000 Rorug05G0001100 Rorug05G0001200 Rorug05G0001300 Rorug05G0001300 Rorug05G0001400
rosa_samantha	Rh5AG095600 Rh5BG091800 Rh5CG104600 Rh5DG091200
rosa_wichuraiana	Rw5G008360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	275
AciI	CCGC	1 cut(s)	304
AclWI	GGATC	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	2 cut(s)	101, 296
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	216, 326
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	4 cut(s)	79, 142, 161, 219
AluI	AGCT	4 cut(s)	79, 142, 161, 219
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	57
AoxI	GGCC	1 cut(s)	175
Asp700I	GAANNNNTTC	1 cut(s)	260
AspS9I	GGNCC	3 cut(s)	13, 175, 209
AvaII	GGWCC	2 cut(s)	13, 209
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	81
BccI	CCATC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	2 cut(s)	13, 209
BmgT120I	GGNCC	3 cut(s)	13, 175, 209
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	26
BpmI	CTGGAG	2 cut(s)	47, 222
Bse1I	ACTGG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	26
BseMII	CTCAG	2 cut(s)	153, 251
BseNI	ACTGG	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	62, 310
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	2 cut(s)	154, 250
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	1 cut(s)	176
BspMAI	CTGCAG	1 cut(s)	234
BspPI	GGATC	1 cut(s)	57
BspQI	GCTCTTC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	123
BssMI	GATC	2 cut(s)	62, 310
Bst2UI	CCWGG	1 cut(s)	26
Bst6I	CTCTTC	2 cut(s)	14, 327
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	2 cut(s)	162, 237
BstFNI	CGCG	1 cut(s)	275
BstKTI	GATC	2 cut(s)	65, 313
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	2 cut(s)	62, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 238
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	1 cut(s)	230
BstUI	CGCG	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	179
Cfr13I	GGNCC	3 cut(s)	13, 175, 209
Csp6I	GTAC	2 cut(s)	100, 295
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	8 cut(s)	24, 79, 142, 161, 177, 200, 219, 241
CviKI_1	RGCY	8 cut(s)	24, 79, 142, 161, 177, 200, 219, 241
CviQI	GTAC	2 cut(s)	100, 295
DdeI	CTNAG	2 cut(s)	162, 237
DpnI	GATC	2 cut(s)	64, 312
DpnII	GATC	2 cut(s)	62, 310
Eam1104I	CTCTTC	2 cut(s)	14, 327
EarI	CTCTTC	2 cut(s)	14, 327
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	13, 209
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	79
EcoO109I	RGGNCCY	2 cut(s)	13, 209
EcoRII	CCWGG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	1 cut(s)	106
FaiI	YATR	4 cut(s)	104, 188, 222, 244
FatI	CATG	1 cut(s)	102
FauI	CCCGC	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	38
GsuI	CTGGAG	2 cut(s)	47, 222
HaeIII	GGCC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	106
HinfI	GANTC	2 cut(s)	57, 248
Hpy166II	GTNNAC	2 cut(s)	35, 271
Hpy188I	TCNGA	3 cut(s)	62, 255, 315
Hpy8I	GTNNAC	2 cut(s)	35, 271
HpyAV	CCTTC	1 cut(s)	222
HpyCH4V	TGCA	3 cut(s)	106, 127, 232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 238
HpyF3I	CTNAG	2 cut(s)	162, 237
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	62, 310
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	8 cut(s)	11, 29, 38, 104, 152, 186, 191, 242
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	276
MalI	GATC	2 cut(s)	64, 312
MboI	GATC	2 cut(s)	62, 310
MboII	GAAGA	2 cut(s)	31, 314
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	3 cut(s)	48, 93, 326
MluI	ACGCGT	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	3 cut(s)	165, 197, 200
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	1 cut(s)	334
MslI	CAYNNNNRTG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	2 cut(s)	158, 238
NdeII	GATC	2 cut(s)	62, 310
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	14
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	57
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PpuMI	RGGWCCY	2 cut(s)	13, 209
Psp124BI	GAGCTC	1 cut(s)	81
Psp5II	RGGWCCY	2 cut(s)	13, 209
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	3 cut(s)	13, 175, 209
PspPPI	RGGWCCY	2 cut(s)	13, 209
PstI	CTGCAG	1 cut(s)	234
RsaI	GTAC	2 cut(s)	101, 296
RsaNI	GTAC	2 cut(s)	100, 295
RseI	CAYNNNNRTG	1 cut(s)	191
SacI	GAGCTC	1 cut(s)	81
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	334
Sau3AI	GATC	2 cut(s)	62, 310
Sau96I	GGNCC	3 cut(s)	13, 175, 209
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	6 cut(s)	18, 81, 144, 163, 214, 221
SfcI	CTRYAG	1 cut(s)	230
SinI	GGWCC	2 cut(s)	13, 209
SmiMI	CAYNNNNRTG	1 cut(s)	191
Sse9I	AATT	3 cut(s)	48, 93, 326
SsiI	CCGC	1 cut(s)	304
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	24
TasI	AATT	3 cut(s)	48, 93, 326
TatI	WGTACW	2 cut(s)	99, 294
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	1 cut(s)	334
Tru9I	TTAA	1 cut(s)	334
VpaK11BI	GGWCC	2 cut(s)	13, 209
XceI	RCATGY	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.