RLG00000031913

Floral homeotic protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003087
Physical Location & Seq
Forward (+)
9428321 .. 9433754
5434 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031913

Sequence Viewer

Length: 630 bp
ATGGCCTATGAAAACAAACCCAACACGGTCCTGGACGCTGATGCCCAAAGAAGATTGGGAAGGGGAAAGATCGAGATCAAGCGGATCGAAAACACCACCAATCGTCAAGTCACCTTCTGCAAAAGGCGCAATGGTTTGCTCAAGAAGGCCTATGAGCTCTCTGTGCTCTGTGATGCTGAGGTTGCTCTCATAGTCTTCTCTAACCGTGGCCGCCTCTATGAGTATTCCAACAACAGTGTTAGAGAAACAATTGAACGATACAAGAAGGCATGTGCAGATTCTTCAAATAATGGATCTGTCTCTGAAGCTACTACTCAGATATTTTTCTGGGTAGATGAACTAGCAATAATTGAAAATAATGAGCTCTTGTTTGCCGAAATTGAGTACATGCAGAAAAGGGAACTTGACTTGCACAACAATAACCAGCTCCTCCGAGCAAAGGGGCAGATAGCTGAGAATGAGAGGCACCAGCAAAGCATAAATGCGATTGCAGGTGGGCATGGAAGCTACGAGATCATGCAGCCAACTCAGCCATTTCATGAGGCTCGCAACTATTTTCAAGTGAATGCTTTGCAACCCAATATCCATCAGTACTCGCGCCATGACCAGATTTCCCTTCAATTAGTGTAA

Protein Analysis

210

Amino Acids

24.16

Weight (kDa)

7.02

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 28 - 75 1.1e-26 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 482
Acc36I ACCTGC 1 cut(s) 482
AccB1I GGYRCC 1 cut(s) 465
AccII CGCG 1 cut(s) 598
AciI CCGC 2 cut(s) 82, 211
AclWI GGATC 2 cut(s) 92, 301
AcoI YGGCCR 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 2 cut(s) 386, 593
AfiI CCNNNNNNNGG 1 cut(s) 439
AgsI TTSAA 5 cut(s) 254, 285, 353, 560, 620
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 6 cut(s) 157, 308, 364, 427, 452, 507
AluI AGCT 6 cut(s) 157, 308, 364, 427, 452, 507
Alw21I GWGCWC 3 cut(s) 159, 168, 366
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 2 cut(s) 92, 301
AoxI GGCC 3 cut(s) 3, 147, 208
ApeKI GCWGC 1 cut(s) 520
AspLEI GCGC 2 cut(s) 129, 600
AspS9I GGNCC 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 28
BanI GGYRCC 1 cut(s) 465
BanII GRGCYC 2 cut(s) 159, 366
BbsI GAAGAC 1 cut(s) 187
Bbv12I GWGCWC 3 cut(s) 159, 168, 366
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 532
BccI CCATC 1 cut(s) 594
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 1 cut(s) 341
BfuAI ACCTGC 1 cut(s) 482
BisI GCNGC 2 cut(s) 211, 521
BlsI GCNGC 2 cut(s) 212, 522
BmcAI AGTACT 1 cut(s) 593
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 467
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 2 cut(s) 31, 163
BpiI GAAGAC 1 cut(s) 187
Bpu10I CCTNAGC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 125
BsaBI GATNNNNATC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 439
Bse3DI GCAATG 1 cut(s) 136
Bse8I GATNNNNATC 1 cut(s) 74
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 205
BseJI GATNNNNATC 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 439
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 4 cut(s) 168, 329, 444, 542
BseRI GAGGAG 1 cut(s) 419
BseXI GCAGC 1 cut(s) 532
BsgI GTGCAG 1 cut(s) 294
Bsh1236I CGCG 1 cut(s) 598
BshFI GGCC 3 cut(s) 5, 149, 210
BshNI GGYRCC 1 cut(s) 465
BsiHKAI GWGCWC 3 cut(s) 159, 168, 366
BslI CCNNNNNNNGG 1 cut(s) 439
BsmAI GTCTC 1 cut(s) 304
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 3 cut(s) 5, 149, 210
Bsp1286I GDGCHC 3 cut(s) 159, 168, 366
Bsp143I GATC 5 cut(s) 69, 75, 84, 293, 513
BspACI CCGC 2 cut(s) 82, 211
BspANI GGCC 3 cut(s) 5, 149, 210
BspCNI CTCAG 4 cut(s) 169, 328, 445, 541
BspFNI CGCG 1 cut(s) 598
BspHI TCATGA 1 cut(s) 538
BspLI GGNNCC 1 cut(s) 467
BspMI ACCTGC 1 cut(s) 482
BspPI GGATC 2 cut(s) 92, 301
BspT107I GGYRCC 1 cut(s) 465
BsrDI GCAATG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 5 cut(s) 69, 75, 84, 293, 513
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 3 cut(s) 28, 206, 236
BstC8I GCNNGC 1 cut(s) 547
BstDEI CTNAG 4 cut(s) 177, 315, 453, 528
BstDSI CCRYGG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 598
BstHHI GCGC 2 cut(s) 129, 600
BstKTI GATC 5 cut(s) 72, 78, 87, 296, 516
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 5 cut(s) 69, 75, 84, 293, 513
BstMWI GCNNNNNNNGC 4 cut(s) 126, 163, 182, 529
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 2 cut(s) 273, 391
BstSCI CCNGG 1 cut(s) 30
BstUI CGCG 1 cut(s) 598
BstV1I GCAGC 1 cut(s) 532
BstV2I GAAGAC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BsuRI GGCC 3 cut(s) 5, 149, 210
BtgI CCRYGG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 241
BveI ACCTGC 1 cut(s) 482
Cac8I GCNNGC 1 cut(s) 547
CciI TCATGA 1 cut(s) 538
CfoI GCGC 2 cut(s) 129, 600
Cfr13I GGNCC 1 cut(s) 28
CseI GACGC 1 cut(s) 44
Csp6I GTAC 2 cut(s) 385, 592
CviAII CATG 6 cut(s) 270, 388, 500, 517, 539, 602
CviQI GTAC 2 cut(s) 385, 592
DdeI CTNAG 4 cut(s) 177, 315, 453, 528
DpnI GATC 5 cut(s) 71, 77, 86, 295, 515
DpnII GATC 5 cut(s) 69, 75, 84, 293, 513
EaeI YGGCCR 1 cut(s) 208
Ecl136II GAGCTC 2 cut(s) 157, 364
Eco147I AGGCCT 1 cut(s) 149
Eco24I GRGCYC 2 cut(s) 159, 366
Eco47I GGWCC 1 cut(s) 28
Eco53kI GAGCTC 2 cut(s) 157, 364
Eco57I CTGAAG 1 cut(s) 324
EcoICRI GAGCTC 2 cut(s) 157, 364
EcoRII CCWGG 1 cut(s) 30
EcoT38I GRGCYC 2 cut(s) 159, 366
FaeI CATG 6 cut(s) 273, 391, 503, 520, 542, 605
FatI CATG 6 cut(s) 269, 387, 499, 516, 538, 601
Fnu4HI GCNGC 2 cut(s) 211, 521
FriOI GRGCYC 2 cut(s) 159, 366
Fsp4HI GCNGC 2 cut(s) 211, 521
FspBI CTAG 1 cut(s) 341
GlaI GCGC 2 cut(s) 128, 599
GluI GCNGC 2 cut(s) 211, 521
HaeIII GGCC 3 cut(s) 5, 149, 210
HgaI GACGC 1 cut(s) 44
HhaI GCGC 2 cut(s) 129, 600
Hin1II CATG 6 cut(s) 273, 391, 503, 520, 542, 605
Hin6I GCGC 2 cut(s) 127, 598
HinP1I GCGC 2 cut(s) 127, 598
HinfI GANTC 1 cut(s) 278
HphI GGTGA 1 cut(s) 103
Hpy188I TCNGA 3 cut(s) 304, 318, 434
Hpy188III TCNNGA 3 cut(s) 73, 142, 539
HpyAV CCTTC 5 cut(s) 54, 124, 139, 259, 626
HpyCH4III ACNGT 3 cut(s) 28, 206, 236
HpyCH4V TGCA 7 cut(s) 120, 275, 391, 412, 491, 520, 574
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 163, 182, 529
HpyF3I CTNAG 4 cut(s) 177, 315, 453, 528
Hsp92II CATG 6 cut(s) 273, 391, 503, 520, 542, 605
HspAI GCGC 2 cut(s) 127, 598
Kzo9I GATC 5 cut(s) 69, 75, 84, 293, 513
LmnI GCTCC 1 cut(s) 432
LpnPI CCDG 7 cut(s) 17, 44, 313, 437, 477, 482, 620
Lsp1109I GCAGC 1 cut(s) 532
LweI GCATC 2 cut(s) 31, 163
MaeI CTAG 1 cut(s) 341
MaeIII GTNAC 1 cut(s) 109
MalI GATC 5 cut(s) 71, 77, 86, 295, 515
MboI GATC 5 cut(s) 69, 75, 84, 293, 513
MboII GAAGA 3 cut(s) 63, 187, 273
MfeI CAATTG 1 cut(s) 249
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 3 cut(s) 159, 168, 366
MluCI AATT 4 cut(s) 249, 348, 378, 620
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 5 cut(s) 172, 224, 440, 456, 535
MspR9I CCNGG 1 cut(s) 32
MunI CAATTG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 1 cut(s) 32
MvnI CGCG 1 cut(s) 598
MwoI GCNNNNNNNGC 4 cut(s) 126, 163, 182, 529
NdeII GATC 5 cut(s) 69, 75, 84, 293, 513
NlaIII CATG 6 cut(s) 273, 391, 503, 520, 542, 605
NlaIV GGNNCC 1 cut(s) 467
NmuCI GTSAC 1 cut(s) 109
NspI RCATGY 2 cut(s) 273, 391
PagI TCATGA 1 cut(s) 538
PaqCI CACCTGC 1 cut(s) 482
PceI AGGCCT 1 cut(s) 149
PctI GAATGC 1 cut(s) 571
PfeI GAWTC 1 cut(s) 278
PfoI TCCNGGA 1 cut(s) 30
PkrI GCNGC 2 cut(s) 212, 522
Psp124BI GAGCTC 2 cut(s) 159, 366
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 467
PspPI GGNCC 1 cut(s) 28
PsuI RGATCY 1 cut(s) 293
RsaI GTAC 2 cut(s) 386, 593
RsaNI GTAC 2 cut(s) 385, 592
SacI GAGCTC 2 cut(s) 159, 366
SatI GCNGC 2 cut(s) 211, 521
Sau3AI GATC 5 cut(s) 69, 75, 84, 293, 513
Sau96I GGNCC 1 cut(s) 28
ScaI AGTACT 1 cut(s) 593
ScrFI CCNGG 1 cut(s) 32
SduI GDGCHC 3 cut(s) 159, 168, 366
SetI ASST 9 cut(s) 116, 159, 183, 310, 366, 429, 454, 496, 509
SfaNI GCATC 2 cut(s) 31, 163
SinI GGWCC 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 4 cut(s) 249, 348, 378, 620
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 2 cut(s) 82, 211
SspMI CTAG 1 cut(s) 341
SstI GAGCTC 2 cut(s) 159, 366
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 30
TaaI ACNGT 3 cut(s) 28, 206, 236
TaqI TCGA 2 cut(s) 72, 87
TasI AATT 4 cut(s) 249, 348, 378, 620
TatI WGTACW 2 cut(s) 384, 591
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 1 cut(s) 278
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 1 cut(s) 520
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 3 cut(s) 24, 351, 527
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 28
XceI RCATGY 2 cut(s) 273, 391
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
XspI CTAG 1 cut(s) 341
ZrmI AGTACT 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.