Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8444057.1

Orthogroup ID

OG0005055

Physical Location & Seq

Genomic Coordinates Reverse (-)

633 .. 1069

Gene Structure 437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8444057.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atggcttccaccaccccagaaaagcacgtctattccgtgtgggcgcttccaccggacgacgtgacccccaggctcaagaagctcatggagggcctccgcgccgaattcaacgggccctacttcgacccccacatcaccgtcgtgggggccatcaccttgacccccgaagacgctctcaacaagtttgaaacggcctcgcaggccgtgaaggcctaccaagccaaagttgagagcgtcgccactggaactttcttttaccagtgtgtgttcctcctcatcaatcccactccccaggtggtggaagctagtgcaatctgctgtgggcattttggttacaatagctcaactcgtgagttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

119

Amino Acids

13.12

Weight (kDa)

5.51

Isoelectric Point (pI)

23.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18930
fragaria_vesca	FvH4_3g06750 FvH4_3g06750 FvH4_3g06750 FvH4_6g06860 FvH4_6g06860
malus_domestica	MD10G1271200.v1.1 MD10G1271300.v1.1
prunus_persica	Prupe.4G070300_v2.0.a1 Prupe.6G318900_v2.0.a1
pyrus_communis	pycom10g22700
rosa_chinensis	RchiOBHm_Chr3g0456341 RchiOBHm_Chr5g0012411
rosa_laevigata	RLG00000025311 RLG00000031911
rosa_multiflora	Rmu_co8444057.1_g000001 Rmu_sc0002607.1_g000022 Rmu_sc0018054.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064260 Rroxscaffold_6G00422810
rosa_rugosa	Rorug05G0000900
rosa_samantha	Rh3AG072700 Rh3BG074800 Rh3CG074400 Rh5AG095400 Rh5AG499800 Rh5BG091600 Rh5DG091000
rosa_wichuraiana	Rw3G006240 Rw5G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	298
AccII	CGCG	1 cut(s)	99
AciI	CCGC	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	144, 298
AgsI	TTSAA	2 cut(s)	109, 188
AjiI	CACGTC	2 cut(s)	28, 61
AjnI	CCWGG	2 cut(s)	68, 291
AleI	CACNNNNGTG	1 cut(s)	140
AluBI	AGCT	3 cut(s)	82, 305, 342
AluI	AGCT	3 cut(s)	82, 305, 342
AoxI	GGCC	6 cut(s)	91, 113, 147, 192, 201, 210
ApaI	GGGCCC	1 cut(s)	117
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	2 cut(s)	46, 101
AspS9I	GGNCC	4 cut(s)	91, 113, 114, 147
AsuHPI	GGTGA	2 cut(s)	127, 145
BaeGI	GKGCMC	1 cut(s)	117
BanII	GRGCYC	1 cut(s)	117
BauI	CACGAG	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	174
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	2 cut(s)	188, 207
BciT130I	CCWGG	2 cut(s)	70, 293
BfaI	CTAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	47
BglI	GCCNNNNNGGC	2 cut(s)	200, 209
Bme1390I	CCNGG	2 cut(s)	70, 293
BmgBI	CACGTC	2 cut(s)	28, 61
BmgT120I	GGNCC	4 cut(s)	91, 113, 114, 147
BmiI	GGNNCC	2 cut(s)	115, 148
BmrFI	CCNGG	2 cut(s)	70, 293
BpiI	GAAGAC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	68, 291
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 298
Bse1I	ACTGG	2 cut(s)	247, 259
BseBI	CCWGG	2 cut(s)	70, 293
BseDI	CCNNGG	2 cut(s)	68, 291
BseLI	CCNNNNNNNGG	2 cut(s)	144, 298
BseNI	ACTGG	2 cut(s)	247, 259
BseRI	GAGGAG	1 cut(s)	263
BseSI	GKGCMC	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	6 cut(s)	93, 115, 149, 194, 203, 212
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	144, 298
BsnI	GGCC	6 cut(s)	93, 115, 149, 194, 203, 212
Bsp120I	GGGCCC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	117
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	6 cut(s)	93, 115, 149, 194, 203, 212
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	115, 148
BsrI	ACTGG	2 cut(s)	247, 259
BssECI	CCNNGG	2 cut(s)	68, 291
BssSI	CACGAG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	348
Bst2UI	CCWGG	2 cut(s)	70, 293
Bst4CI	ACNGT	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	2 cut(s)	46, 101
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 200, 209, 218
BstNI	CCWGG	2 cut(s)	70, 293
BstSCI	CCNGG	2 cut(s)	68, 291
BstSLI	GKGCMC	1 cut(s)	117
BstUI	CGCG	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	174
BsuRI	GGCC	6 cut(s)	93, 115, 149, 194, 203, 212
BtrI	CACGTC	2 cut(s)	28, 61
BtsIMutI	CAGTG	2 cut(s)	240, 266
Cac8I	GCNNGC	1 cut(s)	201
CfoI	GCGC	2 cut(s)	46, 101
Cfr13I	GGNCC	4 cut(s)	91, 113, 114, 147
CseI	GACGC	2 cut(s)	179, 223
CviAII	CATG	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	117
EcoO109I	RGGNCCY	2 cut(s)	91, 114
EcoRI	GAATTC	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	68, 291
EcoT38I	GRGCYC	1 cut(s)	117
FaeI	CATG	1 cut(s)	88
FaiI	YATR	1 cut(s)	86
FatI	CATG	1 cut(s)	84
FriOI	GRGCYC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	2 cut(s)	45, 100
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	6 cut(s)	93, 115, 149, 194, 203, 212
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	2 cut(s)	179, 223
HhaI	GCGC	2 cut(s)	46, 101
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	2 cut(s)	44, 99
HinP1I	GCGC	2 cut(s)	44, 99
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	2 cut(s)	127, 145
Hpy188I	TCNGA	1 cut(s)	359
Hpy188III	TCNNGA	2 cut(s)	76, 350
Hpy99I	CGWCG	3 cut(s)	62, 143, 239
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	2 cut(s)	27, 60
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 200, 209, 218
HpySE526I	ACGT	2 cut(s)	27, 60
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	2 cut(s)	44, 99
LpnPI	CCDG	9 cut(s)	30, 55, 66, 82, 185, 228, 272, 278, 305
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	2 cut(s)	27, 60
MaeIII	GTNAC	2 cut(s)	61, 332
MboII	GAAGA	1 cut(s)	179
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	1 cut(s)	104
MnlI	CCTC	5 cut(s)	82, 104, 205, 281, 284
MslI	CAYNNNNRTG	1 cut(s)	140
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	70, 293
MvaI	CCWGG	2 cut(s)	70, 293
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	4 cut(s)	79, 200, 209, 218
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	2 cut(s)	115, 148
NmuCI	GTSAC	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PflMI	CCANNNNNTGG	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	68, 291
PspGI	CCWGG	2 cut(s)	68, 291
PspN4I	GGNNCC	2 cut(s)	115, 148
PspOMI	GGGCCC	1 cut(s)	113
PspPI	GGNCC	4 cut(s)	91, 113, 114, 147
RseI	CAYNNNNRTG	1 cut(s)	140
Sau96I	GGNCC	4 cut(s)	91, 113, 114, 147
ScrFI	CCNGG	2 cut(s)	70, 293
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	7 cut(s)	30, 63, 84, 158, 297, 307, 344
SfiI	GGCCNNNNNGGCC	2 cut(s)	200, 209
SmiMI	CAYNNNNRTG	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	104
SseBI	AGGCCT	1 cut(s)	212
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	1 cut(s)	306
StuI	AGGCCT	1 cut(s)	212
StyD4I	CCNGG	2 cut(s)	68, 291
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	2 cut(s)	30, 63
TaqI	TCGA	1 cut(s)	123
TasI	AATT	1 cut(s)	104
TscAI	CASTG	2 cut(s)	247, 266
TseFI	GTSAC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	61
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	2 cut(s)	247, 266
Van91I	CCANNNNNTGG	1 cut(s)	298
XapI	RAATTY	1 cut(s)	104
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.