Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005055

Physical Location & Seq

Genomic Coordinates Reverse (-)

43824421 .. 43826713

Gene Structure 2293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025311

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAGCCCCTCCGGGCTGAGTTTGGTGGGCCCGAGATAGAGCCCCACATTACCGCCGTAGGGTCTGTCCTTTTGACGCATGACTACGTGGTCAAACAATTTATAAATGGTTGTGAAAATATAGAACCCTACACTTGTGAAGTTGATCAGGTGGTTACTCGCAAATTCTATTACCAACCTGTCTCCCTCCTCTTTCAGCCATGTCCATGGGTTGGACACTTTGGTGGTTATCTACATCGCTGTAATGGCCGACGACGGCCCCTCCCCCTCAAATCCCCCTTTGATTTCGACTTCCGCTGGCTCCGGCTACATCAGAGTGGGGTTGGCGGTGATGAAGAAGCGGTGAGGCCACAGTTTTTTGGTGACTTTTGGAGAAGGTCAACCTCCGGCAATGATGAAATTCAAACCGAGAGGATCCGAATCGGATTCTACAGAACCAGACGCGCGGACTACCTTACGATGAGGATTGAAGGTGTGCGCCGTCTCTGTAAGGTTCGACTGGCTTCCGATGATGATGACGAGGGCTTTAATGAAGACACCGGGCCAGTTTCTGTGGGATTACTGATTTTGAGTTGCCGCTGTAGCCACAGAGGAGTGAGGGTGAGGGAGGTGGAAATGAGATTACGGGAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

212

Amino Acids

24.56

Weight (kDa)

7.0

Isoelectric Point (pI)

61.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18930
fragaria_vesca	FvH4_3g06750 FvH4_3g06750 FvH4_3g06750 FvH4_6g06860 FvH4_6g06860
malus_domestica	MD10G1271200.v1.1 MD10G1271300.v1.1
prunus_persica	Prupe.4G070300_v2.0.a1 Prupe.6G318900_v2.0.a1
pyrus_communis	pycom10g22700
rosa_chinensis	RchiOBHm_Chr3g0456341 RchiOBHm_Chr5g0012411
rosa_laevigata	RLG00000025311 RLG00000031911
rosa_multiflora	Rmu_co8444057.1_g000001 Rmu_sc0002607.1_g000022 Rmu_sc0018054.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064260 Rroxscaffold_6G00422810
rosa_rugosa	Rorug05G0000900
rosa_samantha	Rh3AG072700 Rh3BG074800 Rh3CG074400 Rh5AG095400 Rh5AG499800 Rh5BG091600 Rh5DG091000
rosa_wichuraiana	Rw3G006240 Rw5G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
AasI	GACNNNNNNGTC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccII	CGCG	2 cut(s)	444, 446
AciI	CCGC	6 cut(s)	54, 295, 327, 341, 446, 577
AclWI	GGATC	2 cut(s)	409, 422
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	3 cut(s)	164, 399, 629
AfiI	CCNNNNNNNGG	2 cut(s)	60, 212
AgsI	TTSAA	2 cut(s)	404, 470
AleI	CACNNNNGTG	1 cut(s)	222
Alw26I	GTCTC	2 cut(s)	187, 488
AlwI	GGATC	2 cut(s)	409, 422
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	5 cut(s)	29, 247, 257, 347, 542
ApaI	GGGCCC	1 cut(s)	33
ApoI	RAATTY	3 cut(s)	164, 399, 629
AspLEI	GCGC	2 cut(s)	446, 480
AspS9I	GGNCC	4 cut(s)	29, 30, 258, 542
AsuC2I	CCSGG	2 cut(s)	14, 541
AsuHPI	GGTGA	4 cut(s)	341, 355, 374, 613
AvaI	CYCGRG	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	33
BamHI	GGATCC	1 cut(s)	414
BanII	GRGCYC	3 cut(s)	9, 33, 45
BbsI	GAAGAC	1 cut(s)	540
BceAI	ACGGC	3 cut(s)	41, 272, 465
BclI	TGATCA	1 cut(s)	145
BcnI	CCSGG	2 cut(s)	14, 541
BcoDI	GTCTC	2 cut(s)	187, 488
BfmI	CTRYAG	2 cut(s)	430, 580
BisI	GCNGC	1 cut(s)	577
BlsI	GCNGC	1 cut(s)	578
Bme1390I	CCNGG	2 cut(s)	14, 541
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	4 cut(s)	29, 30, 258, 542
BmiI	GGNNCC	5 cut(s)	6, 31, 260, 302, 416
BmrFI	CCNGG	2 cut(s)	14, 541
BpiI	GAAGAC	1 cut(s)	540
BpuMI	CCSGG	2 cut(s)	14, 541
BsaAI	YACGTR	1 cut(s)	88
BsaBI	GATNNNNATC	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	206
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 585, 615
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 212
Bse1I	ACTGG	2 cut(s)	504, 545
Bse3DI	GCAATG	1 cut(s)	397
Bse8I	GATNNNNATC	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	206
BseJI	GATNNNNATC	1 cut(s)	419
BseLI	CCNNNNNNNGG	2 cut(s)	60, 212
BseMI	GCAATG	1 cut(s)	397
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	2 cut(s)	504, 545
BseRI	GAGGAG	2 cut(s)	179, 606
BseSI	GKGCMC	1 cut(s)	33
Bsh1236I	CGCG	2 cut(s)	444, 446
BshFI	GGCC	5 cut(s)	31, 249, 259, 349, 544
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	4 cut(s)	13, 304, 387, 540
BslI	CCNNNNNNNGG	2 cut(s)	60, 212
BsmAI	GTCTC	2 cut(s)	187, 488
BsmBI	CGTCTC	1 cut(s)	488
BsnI	GGCC	5 cut(s)	31, 249, 259, 349, 544
BsoBI	CYCGRG	1 cut(s)	32
Bsp120I	GGGCCC	1 cut(s)	29
Bsp1286I	GDGCHC	3 cut(s)	9, 33, 45
Bsp143I	GATC	2 cut(s)	145, 414
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	6 cut(s)	54, 295, 327, 341, 446, 577
BspANI	GGCC	5 cut(s)	31, 249, 259, 349, 544
BspCNI	CTCAG	1 cut(s)	10
BspFNI	CGCG	2 cut(s)	444, 446
BspLI	GGNNCC	5 cut(s)	6, 31, 260, 302, 416
BspPI	GGATC	2 cut(s)	409, 422
BsrDI	GCAATG	1 cut(s)	397
BsrI	ACTGG	2 cut(s)	504, 545
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	145, 414
BssT1I	CCWWGG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	354
BstBAI	YACGTR	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	18
BstDSI	CCRYGG	1 cut(s)	206
BstFNI	CGCG	2 cut(s)	444, 446
BstHHI	GCGC	2 cut(s)	446, 480
BstKTI	GATC	2 cut(s)	148, 417
BstMAI	GTCTC	2 cut(s)	187, 488
BstMBI	GATC	2 cut(s)	145, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 582
BstSCI	CCNGG	2 cut(s)	12, 539
BstSFI	CTRYAG	2 cut(s)	430, 580
BstSLI	GKGCMC	1 cut(s)	33
BstUI	CGCG	2 cut(s)	444, 446
BstV2I	GAAGAC	1 cut(s)	540
BstX2I	RGATCY	1 cut(s)	414
BstXI	CCANNNNNNTGG	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	414
BsuRI	GGCC	5 cut(s)	31, 249, 259, 349, 544
BtgI	CCRYGG	1 cut(s)	206
BtgZI	GCGATG	1 cut(s)	221
Cac8I	GCNNGC	1 cut(s)	299
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	2 cut(s)	446, 480
Cfr13I	GGNCC	4 cut(s)	29, 30, 258, 542
CseI	GACGC	2 cut(s)	85, 450
CviAII	CATG	3 cut(s)	80, 201, 207
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	2 cut(s)	147, 416
DpnII	GATC	2 cut(s)	145, 414
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
EaeI	YGGCCR	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	206
Eco24I	GRGCYC	3 cut(s)	9, 33, 45
Eco88I	CYCGRG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	206
EcoT38I	GRGCYC	3 cut(s)	9, 33, 45
ErhI	CCWWGG	1 cut(s)	206
Esp3I	CGTCTC	1 cut(s)	488
FaeI	CATG	3 cut(s)	83, 204, 210
FaiI	YATR	5 cut(s)	81, 104, 122, 202, 208
FatI	CATG	3 cut(s)	79, 200, 206
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	577
FriOI	GRGCYC	3 cut(s)	9, 33, 45
Fsp4HI	GCNGC	1 cut(s)	577
GlaI	GCGC	2 cut(s)	445, 479
GluI	GCNGC	1 cut(s)	577
HaeIII	GGCC	5 cut(s)	31, 249, 259, 349, 544
HapII	CCGG	4 cut(s)	13, 304, 387, 540
HgaI	GACGC	2 cut(s)	85, 450
HhaI	GCGC	2 cut(s)	446, 480
Hin1II	CATG	3 cut(s)	83, 204, 210
Hin6I	GCGC	2 cut(s)	444, 478
HinP1I	GCGC	2 cut(s)	444, 478
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HinfI	GANTC	2 cut(s)	420, 426
HpaII	CCGG	4 cut(s)	13, 304, 387, 540
HphI	GGTGA	4 cut(s)	341, 355, 374, 613
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	4 cut(s)	315, 419, 425, 508
Hpy8I	GTNNAC	1 cut(s)	381
Hpy99I	CGWCG	2 cut(s)	255, 258
HpyAV	CCTTC	2 cut(s)	369, 464
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4IV	ACGT	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 582
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	83, 204, 210
HspAI	GCGC	2 cut(s)	444, 478
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	145, 414
LmnI	GCTCC	2 cut(s)	4, 306
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	154, 362
MalI	GATC	2 cut(s)	147, 416
MboI	GATC	2 cut(s)	145, 414
MboII	GAAGA	2 cut(s)	347, 545
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	3 cut(s)	9, 33, 45
MluCI	AATT	4 cut(s)	98, 164, 399, 629
MmeI	TCCRAC	1 cut(s)	193
MseI	TTAA	1 cut(s)	528
MslI	CAYNNNNRTG	3 cut(s)	205, 222, 315
MspA1I	CMGCKG	2 cut(s)	297, 579
MspI	CCGG	4 cut(s)	13, 304, 387, 540
MspR9I	CCNGG	2 cut(s)	14, 541
MvnI	CGCG	2 cut(s)	444, 446
MwoI	GCNNNNNNNGC	2 cut(s)	246, 582
NciI	CCSGG	2 cut(s)	14, 541
NcoI	CCATGG	1 cut(s)	206
NdeII	GATC	2 cut(s)	145, 414
NlaIII	CATG	3 cut(s)	83, 204, 210
NlaIV	GGNNCC	5 cut(s)	6, 31, 260, 302, 416
NmuCI	GTSAC	1 cut(s)	362
OliI	CACNNNNGTG	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	420, 426
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	578
Ppu21I	YACGTR	1 cut(s)	88
PsiI	TTATAA	1 cut(s)	104
PspN4I	GGNNCC	5 cut(s)	6, 31, 260, 302, 416
PspOMI	GGGCCC	1 cut(s)	29
PspPI	GGNCC	4 cut(s)	29, 30, 258, 542
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	414
RseI	CAYNNNNRTG	3 cut(s)	205, 222, 315
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	1 cut(s)	577
Sau3AI	GATC	2 cut(s)	145, 414
Sau96I	GGNCC	4 cut(s)	29, 30, 258, 542
ScrFI	CCNGG	2 cut(s)	14, 541
SduI	GDGCHC	3 cut(s)	9, 33, 45
SetI	ASST	9 cut(s)	90, 153, 181, 380, 386, 456, 475, 495, 612
SfcI	CTRYAG	2 cut(s)	430, 580
SmiMI	CAYNNNNRTG	3 cut(s)	205, 222, 315
Sse9I	AATT	4 cut(s)	98, 164, 399, 629
SsiI	CCGC	6 cut(s)	54, 295, 327, 341, 446, 577
StyD4I	CCNGG	2 cut(s)	12, 539
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	354
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	288, 496
TasI	AATT	4 cut(s)	98, 164, 399, 629
TauI	GCSGC	1 cut(s)	579
TfiI	GAWTC	2 cut(s)	420, 426
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TseFI	GTSAC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	3 cut(s)	348, 411, 546
Van91I	CCANNNNNTGG	1 cut(s)	212
XapI	RAATTY	3 cut(s)	164, 399, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.