Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005727

Physical Location & Seq

Genomic Coordinates Forward (+)

10521259 .. 10523961

Gene Structure 2703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G19230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGATATCTCCGCCTTGTTTCTCACTCTCTTCGCCGGAAGTCTCTTCCTTTACTTTCTCCGGTGTCTAATCTCTCAGCGCCGCTTTGGATCTTCCAAACTCCCACTCCCTCCGGGAACAATGGGTTGGCCTTACGTCGGAGAAACTTTCCAGCTTTACTCTCAAGACCCTAATGTCTTTTTCCAATCAAAACAGAAAAGGTATGGATCGGTGTTTAAGACTCATGTATTGGGATGTCCATGTGTGATGATCTCGAGTCCAGAGGCTGCTAAGTTCGTGCTGGTGACGAAATCTCATCTCTTTAAACCAACTTTTCCGGCGAGTAAAGAGAGGATGTTGGGGAAACAAGCCATCTTCTTCCACCAGGGTGATTATCACGCTAAACTCAGGAAGCTTGTTCTTCGTGCTTTTATGCCTGAATCTATCAGAAACATGGTTCCTGATATTGAATCCATCGCTCAAGACTCTCTCCGAAGTTGGGAGGGAACAATGATCAACACTTACCAAGAAATGAAAACATACACCTTCAACGTTGCGTTGCTATCGATCTTCGGAAAAGACGAGGTTTTATACAGAGAAGATCTAAAACGATGCTACTACATTCTCGAGAAAGGTTACAATTCGATGCCAGTGAATCTCCCTGGAACACTTTTCCACAAATCAATGAAAGCTCGGAAGGAACTCTCACAGATCCTCGCTAGAATCTTATCAGAGAGAAGACAGAACGGTTCCTCACACAACGATCTTCTCGGATCATTCATGGGAGACAAAGAAGAGCTAACCGACGAACAGATCGCCGACAACATAATCGGAGTAATCTTCGCCGCTAGAGACACGACGGCGAGTGTGATGTCGTGGATCCTCAAGTACCTAGCCGAGAATCCCAACGTTCTAGAAGCCGTTACTGAAGAACAAATGGCAATAAGGAAAGACAAAGAAGAAGGAGAGTCTCTAACTTGGGGAGATACAAAGAAGATGCCATTAACTTCAAGAGTTATTCAAGAAACATTAAGAGTCGCTTCAATCTTATCTTTCACATTCAGAGAAGCTGTCGAAGATGTCGAATACGAAGGATATTTGATACCTAAAGGATGGAAAGTGTTACCCCTATTCAGAAACATTCATCATAGTGCTGATATTTTTTCTAATCCGGGGAAATTTGATCCATCAAGATTCGAGGTGGCTCCAAAACCCAATACGTTCATGCCATTTGGCAATGGAACCCACTCGTGTCCTGGAAATGAATTAGCCAAGCTTGAGATGTCTATTATGATTCATCATCTCACCACCAAGTACAGTTGGTCAATTGTTGGAGCGAGCGACGGGATTCAGTATGGGCCATTCGCGCTTCCCCAAAACGGACTGCCCATTGTGCTGGCCCGGAAGCCGGAGATCGAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006066 GO:0006082 GO:0006629 GO:0006694 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009687 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042445 GO:0042446 GO:0042592 GO:0043288 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902644

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

467

Amino Acids

53.04

Weight (kDa)

8.57

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	37 - 434	2.6e-77	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19230 AT4G19230 AT5G45340 AT5G45340
fragaria_vesca	FvH4_5g25150 FvH4_5g25150 FvH4_5g25150 FvH4_5g25150 FvH4_5g25150
malus_domestica	MD06G1010900.v1.1 MD11G1240500.v1.1 MD16G1285900.v1.1
prunus_persica	Prupe.5G013100_v2.0.a1 Prupe.5G013100_v2.0.a1
pyrus_communis	pycom06g00890 pycom06g00900 pycom16g25780
rosa_chinensis	RchiOBHm_Chr7g0215351
rosa_laevigata	RLG00000002668
rosa_multiflora	Rmu_co8050526.1_g000001 Rmu_sc0000765.1_g000031
rosa_roxburghii	Rroxscaffold_3G00244250
rosa_rugosa	Rorug07G0152600
rosa_samantha	Rh7AG289200 Rh7BG281100 Rh7CG309000 Rh7DG292800
rosa_wichuraiana	Rw7G024720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
AccII	CGCG	1 cut(s)	1346
AciI	CCGC	3 cut(s)	12, 82, 825
AclI	AACGTT	2 cut(s)	531, 888
AclWI	GGATC	7 cut(s)	97, 214, 685, 760, 853, 866, 1157
AcsI	RAATTY	1 cut(s)	1157
AcuI	CTGAAG	1 cut(s)	927
AfaI	GTAC	2 cut(s)	869, 1295
AfiI	CCNNNNNNNGG	4 cut(s)	137, 478, 1358, 1387
AgsI	TTSAA	5 cut(s)	449, 529, 990, 1001, 1023
AjnI	CCWGG	3 cut(s)	363, 640, 1234
AjuI	GAANNNNNNNTTGG	2 cut(s)	109, 141
AleI	CACNNNNGTG	1 cut(s)	366
AluBI	AGCT	6 cut(s)	154, 394, 671, 778, 1049, 1255
AluI	AGCT	6 cut(s)	154, 394, 671, 778, 1049, 1255
Alw26I	GTCTC	4 cut(s)	47, 759, 825, 954
AlwI	GGATC	7 cut(s)	97, 214, 685, 760, 853, 866, 1157
AlwNI	CAGNNNCTG	1 cut(s)	266
Ama87I	CYCGRG	2 cut(s)	253, 605
AoxI	GGCC	3 cut(s)	128, 1337, 1377
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	1157
AspLEI	GCGC	2 cut(s)	81, 1348
AspS9I	GGNCC	2 cut(s)	1337, 1378
AsuC2I	CCSGG	3 cut(s)	114, 1152, 1381
AsuHPI	GGTGA	3 cut(s)	295, 380, 1276
AvaI	CYCGRG	2 cut(s)	253, 605
BamHI	GGATCC	1 cut(s)	858
BauI	CACGAG	1 cut(s)	1228
BbsI	GAAGAC	1 cut(s)	724
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	4 cut(s)	359, 461, 1086, 1174
BceAI	ACGGC	2 cut(s)	855, 884
BciT130I	CCWGG	3 cut(s)	365, 642, 1236
BclI	TGATCA	1 cut(s)	492
BcnI	CCSGG	3 cut(s)	114, 1152, 1381
BcoDI	GTCTC	4 cut(s)	47, 759, 825, 954
BfaI	CTAG	4 cut(s)	699, 828, 872, 893
BfoI	RGCGCY	1 cut(s)	82
BglII	AGATCT	1 cut(s)	580
BisI	GCNGC	3 cut(s)	82, 267, 825
BlsI	GCNGC	3 cut(s)	83, 268, 826
Bme1390I	CCNGG	6 cut(s)	114, 365, 642, 1152, 1236, 1381
BmeT110I	CYCGRG	2 cut(s)	253, 605
BmgT120I	GGNCC	2 cut(s)	1337, 1378
BmiI	GGNNCC	5 cut(s)	438, 730, 860, 1185, 1222
BmrFI	CCNGG	6 cut(s)	114, 365, 642, 1152, 1236, 1381
BmsI	GCATC	3 cut(s)	581, 615, 966
BpiI	GAAGAC	1 cut(s)	724
BpuEI	CTTGAG	4 cut(s)	147, 444, 848, 1277
BpuMI	CCSGG	3 cut(s)	114, 1152, 1381
Bsa29I	ATCGAT	1 cut(s)	545
BsaJI	CCNNGG	3 cut(s)	364, 640, 1151
BsaWI	WCCGGW	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	4 cut(s)	137, 478, 1358, 1387
Bse1I	ACTGG	1 cut(s)	629
Bse3DI	GCAATG	1 cut(s)	1222
BseBI	CCWGG	3 cut(s)	365, 642, 1236
BseCI	ATCGAT	1 cut(s)	545
BseDI	CCNNGG	3 cut(s)	364, 640, 1151
BseGI	GGATG	3 cut(s)	239, 339, 1097
BseLI	CCNNNNNNNGG	4 cut(s)	137, 478, 1358, 1387
BseMI	GCAATG	1 cut(s)	1222
BseMII	CTCAG	2 cut(s)	89, 400
BseNI	ACTGG	1 cut(s)	629
BseXI	GCAGC	1 cut(s)	253
Bsh1236I	CGCG	1 cut(s)	1346
BshFI	GGCC	3 cut(s)	130, 1339, 1379
BshVI	ATCGAT	1 cut(s)	545
BsiHKCI	CYCGRG	2 cut(s)	253, 605
BsiSI	CCGG	7 cut(s)	36, 61, 113, 317, 1151, 1381, 1388
BslI	CCNNNNNNNGG	4 cut(s)	137, 478, 1358, 1387
BsmAI	GTCTC	4 cut(s)	47, 759, 825, 954
BsnI	GGCC	3 cut(s)	130, 1339, 1379
BsoBI	CYCGRG	2 cut(s)	253, 605
BspACI	CCGC	3 cut(s)	12, 82, 825
BspANI	GGCC	3 cut(s)	130, 1339, 1379
BspCNI	CTCAG	2 cut(s)	88, 399
BspDI	ATCGAT	1 cut(s)	545
BspFNI	CGCG	1 cut(s)	1346
BspLI	GGNNCC	5 cut(s)	438, 730, 860, 1185, 1222
BspPI	GGATC	7 cut(s)	97, 214, 685, 760, 853, 866, 1157
BspQI	GCTCTTC	1 cut(s)	768
BsrDI	GCAATG	1 cut(s)	1222
BsrI	ACTGG	1 cut(s)	629
BssECI	CCNNGG	3 cut(s)	364, 640, 1151
BssSI	CACGAG	1 cut(s)	1228
Bst2BI	CACGAG	1 cut(s)	1228
Bst2UI	CCWGG	3 cut(s)	365, 642, 1236
Bst4CI	ACNGT	2 cut(s)	728, 1298
Bst6I	CTCTTC	3 cut(s)	35, 50, 768
BstC8I	GCNNGC	2 cut(s)	1318, 1377
BstDEI	CTNAG	3 cut(s)	75, 270, 386
BstF5I	GGATG	3 cut(s)	239, 339, 1097
BstFNI	CGCG	1 cut(s)	1346
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	2 cut(s)	81, 1348
BstMAI	GTCTC	4 cut(s)	47, 759, 825, 954
BstMWI	GCNNNNNNNGC	2 cut(s)	1345, 1372
BstNI	CCWGG	3 cut(s)	365, 642, 1236
BstSCI	CCNGG	6 cut(s)	112, 363, 640, 1150, 1234, 1379
BstUI	CGCG	1 cut(s)	1346
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	724
BstX2I	RGATCY	4 cut(s)	89, 580, 690, 858
BstXI	CCANNNNNNTGG	1 cut(s)	1375
BstYI	RGATCY	4 cut(s)	89, 580, 690, 858
Bsu15I	ATCGAT	1 cut(s)	545
BsuRI	GGCC	3 cut(s)	130, 1339, 1379
BsuTUI	ATCGAT	1 cut(s)	545
BtgZI	GCGATG	1 cut(s)	439
BtsCI	GGATG	3 cut(s)	239, 339, 1097
BtsIMutI	CAGTG	1 cut(s)	636
Cac8I	GCNNGC	2 cut(s)	1318, 1377
CaiI	CAGNNNCTG	1 cut(s)	266
CfoI	GCGC	2 cut(s)	81, 1348
Cfr13I	GGNCC	2 cut(s)	1337, 1378
ClaI	ATCGAT	1 cut(s)	545
Csp6I	GTAC	2 cut(s)	868, 1294
CviAII	CATG	5 cut(s)	224, 240, 433, 760, 1204
CviQI	GTAC	2 cut(s)	868, 1294
DdeI	CTNAG	3 cut(s)	75, 270, 386
DraI	TTTAAA	1 cut(s)	304
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
Eam1104I	CTCTTC	3 cut(s)	35, 50, 768
EarI	CTCTTC	3 cut(s)	35, 50, 768
Eco32I	GATATC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	927
Eco88I	CYCGRG	2 cut(s)	253, 605
EcoRII	CCWGG	3 cut(s)	363, 640, 1234
EcoRV	GATATC	1 cut(s)	7
FaeI	CATG	5 cut(s)	227, 243, 436, 763, 1207
FalI	AAGNNNNNCTT	2 cut(s)	1003, 1035
FatI	CATG	5 cut(s)	223, 239, 432, 759, 1203
FbaI	TGATCA	1 cut(s)	492
Fnu4HI	GCNGC	3 cut(s)	82, 267, 825
FokI	GGATG	3 cut(s)	246, 346, 1104
Fsp4HI	GCNGC	3 cut(s)	82, 267, 825
FspBI	CTAG	4 cut(s)	699, 828, 872, 893
GlaI	GCGC	2 cut(s)	80, 1347
GluI	GCNGC	3 cut(s)	82, 267, 825
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	3 cut(s)	130, 1339, 1379
HapII	CCGG	7 cut(s)	36, 61, 113, 317, 1151, 1381, 1388
HhaI	GCGC	2 cut(s)	81, 1348
Hin1II	CATG	5 cut(s)	227, 243, 436, 763, 1207
Hin6I	GCGC	2 cut(s)	79, 1346
HinP1I	GCGC	2 cut(s)	79, 1346
HindIII	AAGCTT	2 cut(s)	392, 1253
HpaII	CCGG	7 cut(s)	36, 61, 113, 317, 1151, 1381, 1388
HphI	GGTGA	3 cut(s)	295, 380, 1276
Hpy99I	CGWCG	4 cut(s)	140, 788, 841, 1325
HpyAV	CCTTC	4 cut(s)	535, 670, 935, 1064
HpyCH4III	ACNGT	2 cut(s)	728, 1298
HpyCH4IV	ACGT	4 cut(s)	135, 531, 888, 1199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1345, 1372
HpyF3I	CTNAG	3 cut(s)	75, 270, 386
HpySE526I	ACGT	4 cut(s)	135, 531, 888, 1199
Hsp92II	CATG	5 cut(s)	227, 243, 436, 763, 1207
HspAI	GCGC	2 cut(s)	79, 1346
Ksp22I	TGATCA	1 cut(s)	492
LguI	GCTCTTC	1 cut(s)	768
LmnI	GCTCC	2 cut(s)	1189, 1313
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	3 cut(s)	581, 615, 966
MaeI	CTAG	4 cut(s)	699, 828, 872, 893
MaeII	ACGT	4 cut(s)	135, 531, 888, 1199
MaeIII	GTNAC	4 cut(s)	283, 614, 901, 1101
MfeI	CAATTG	1 cut(s)	1305
MflI	RGATCY	4 cut(s)	89, 580, 690, 858
MluCI	AATT	4 cut(s)	619, 1157, 1244, 1305
MlyI	GAGTC	5 cut(s)	214, 265, 458, 956, 1023
MmeI	TCCRAC	2 cut(s)	118, 1291
MnlI	CCTC	9 cut(s)	120, 256, 324, 475, 556, 704, 742, 872, 1171
MseI	TTAA	4 cut(s)	216, 303, 983, 1010
MslI	CAYNNNNRTG	2 cut(s)	366, 1128
MspI	CCGG	7 cut(s)	36, 61, 113, 317, 1151, 1381, 1388
MspR9I	CCNGG	6 cut(s)	114, 365, 642, 1152, 1236, 1381
MunI	CAATTG	1 cut(s)	1305
MvaI	CCWGG	3 cut(s)	365, 642, 1236
MvnI	CGCG	1 cut(s)	1346
MwoI	GCNNNNNNNGC	2 cut(s)	1345, 1372
NciI	CCSGG	3 cut(s)	114, 1152, 1381
NlaIII	CATG	5 cut(s)	227, 243, 436, 763, 1207
NlaIV	GGNNCC	5 cut(s)	438, 730, 860, 1185, 1222
NmeAIII	GCCGAG	1 cut(s)	901
NmuCI	GTSAC	1 cut(s)	283
OliI	CACNNNNGTG	1 cut(s)	366
PaeR7I	CTCGAG	2 cut(s)	253, 605
PciSI	GCTCTTC	1 cut(s)	768
PcsI	WCGNNNNNNNCGW	2 cut(s)	558, 1059
PfeI	GAWTC	8 cut(s)	419, 449, 634, 702, 880, 1173, 1273, 1327
PfoI	TCCNGGA	2 cut(s)	112, 1234
PkrI	GCNGC	3 cut(s)	83, 268, 826
PleI	GAGTC	5 cut(s)	214, 264, 458, 955, 1022
PpsI	GAGTC	5 cut(s)	214, 264, 458, 955, 1022
Psp1406I	AACGTT	2 cut(s)	531, 888
Psp6I	CCWGG	3 cut(s)	363, 640, 1234
PspGI	CCWGG	3 cut(s)	363, 640, 1234
PspN4I	GGNNCC	5 cut(s)	438, 730, 860, 1185, 1222
PspPI	GGNCC	2 cut(s)	1337, 1378
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	4 cut(s)	89, 580, 690, 858
RsaI	GTAC	2 cut(s)	869, 1295
RsaNI	GTAC	2 cut(s)	868, 1294
RseI	CAYNNNNRTG	2 cut(s)	366, 1128
SapI	GCTCTTC	1 cut(s)	768
SaqAI	TTAA	4 cut(s)	216, 303, 983, 1010
SatI	GCNGC	3 cut(s)	82, 267, 825
Sau96I	GGNCC	2 cut(s)	1337, 1378
SchI	GAGTC	5 cut(s)	214, 265, 458, 956, 1023
ScrFI	CCNGG	6 cut(s)	114, 365, 642, 1152, 1236, 1381
SfaNI	GCATC	3 cut(s)	581, 615, 966
Sfr274I	CTCGAG	2 cut(s)	253, 605
SlaI	CTCGAG	2 cut(s)	253, 605
SmiMI	CAYNNNNRTG	2 cut(s)	366, 1128
SmlI	CTYRAG	6 cut(s)	162, 253, 459, 605, 863, 1256
SmoI	CTYRAG	6 cut(s)	162, 253, 459, 605, 863, 1256
Sse9I	AATT	4 cut(s)	619, 1157, 1244, 1305
SsiI	CCGC	3 cut(s)	12, 82, 825
SspMI	CTAG	4 cut(s)	699, 828, 872, 893
StyD4I	CCNGG	6 cut(s)	112, 363, 640, 1150, 1234, 1379
TaaI	ACNGT	2 cut(s)	728, 1298
TaiI	ACGT	4 cut(s)	138, 534, 891, 1202
TaqI	TCGA	8 cut(s)	254, 545, 606, 623, 1053, 1062, 1176, 1395
TasI	AATT	4 cut(s)	619, 1157, 1244, 1305
TatI	WGTACW	1 cut(s)	1293
TauI	GCSGC	2 cut(s)	84, 827
TfiI	GAWTC	8 cut(s)	419, 449, 634, 702, 880, 1173, 1273, 1327
Tru1I	TTAA	4 cut(s)	216, 303, 983, 1010
Tru9I	TTAA	4 cut(s)	216, 303, 983, 1010
TscAI	CASTG	1 cut(s)	636
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	7 cut(s)	527, 680, 748, 1112, 1192, 1257, 1265
TspGWI	ACGGA	1 cut(s)	1374
TspRI	CASTG	1 cut(s)	636
XapI	RAATTY	1 cut(s)	1157
XbaI	TCTAGA	1 cut(s)	892
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1232
XhoI	CTCGAG	2 cut(s)	253, 605
XspI	CTAG	4 cut(s)	699, 828, 872, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.