Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005727

Physical Location & Seq

Genomic Coordinates Forward (+)

34998584 .. 34999666

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1240500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAAGGAGAGCTTGAGGATGGCAAGCATCATCTCTTTTACCTGTAGGGAAGCTGTCGAAGCTGTCGAAGATGTTGAATACAAAGTATACTTGATCCCAAAGGGATGGAAAGTACTGCCTTTGTTTCGGAACATTCATCATAATCCAGAATATTTTGCTGATCCGCACAAATTCGATCCATCAAGATTTGAGGCAATATATGGAAGGCTTGGAGTAAAGCCCAACACGTTCATGCCATTTGGAAATGGAATTCATACCTGTCCAGGAAATGAAGTTGCCAAGCTAGAAGTGCTTATTTTTATCCACCATCTTGTTAACAAGTTCAGGTACGACCGTACGTATATTTTTCTCTTCAGTCGGGTTCAATCCCCACTGATCCTCCTCCTAACTTTCATCCTAACAACTAACAATTTAAGTTATTTAACTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010295 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

144

Amino Acids

16.71

Weight (kDa)

8.91

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 110	1e-27	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19230 AT4G19230 AT5G45340 AT5G45340
fragaria_vesca	FvH4_5g25150 FvH4_5g25150 FvH4_5g25150 FvH4_5g25150 FvH4_5g25150
malus_domestica	MD06G1010900.v1.1 MD11G1240500.v1.1 MD16G1285900.v1.1
prunus_persica	Prupe.5G013100_v2.0.a1 Prupe.5G013100_v2.0.a1
pyrus_communis	pycom06g00890 pycom06g00900 pycom16g25780
rosa_chinensis	RchiOBHm_Chr7g0215351
rosa_laevigata	RLG00000002668
rosa_multiflora	Rmu_co8050526.1_g000001 Rmu_sc0000765.1_g000031
rosa_roxburghii	Rroxscaffold_3G00244250
rosa_rugosa	Rorug07G0152600
rosa_samantha	Rh7AG289200 Rh7BG281100 Rh7CG309000 Rh7DG292800
rosa_wichuraiana	Rw7G024720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	4 cut(s)	88, 155, 170, 370
AcsI	RAATTY	2 cut(s)	170, 249
AcuI	CTGAAG	1 cut(s)	337
AfaI	GTAC	3 cut(s)	114, 329, 337
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	77, 365
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	4 cut(s)	12, 53, 62, 283
AluI	AGCT	4 cut(s)	12, 53, 62, 283
AlwI	GGATC	4 cut(s)	88, 155, 170, 370
ApoI	RAATTY	2 cut(s)	170, 249
BaeI	ACNNNNGTAYC	2 cut(s)	319, 352
BccI	CCATC	4 cut(s)	13, 99, 187, 315
BciT130I	CCWGG	1 cut(s)	264
BfaI	CTAG	1 cut(s)	284
BfmI	CTRYAG	1 cut(s)	43
BmcAI	AGTACT	1 cut(s)	114
Bme1390I	CCNGG	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	34
BsaAI	YACGTR	1 cut(s)	339
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
BseBI	CCWGG	1 cut(s)	264
BseGI	GGATG	3 cut(s)	24, 110, 393
BseRI	GAGGAG	1 cut(s)	371
Bsh1285I	CGRYCG	1 cut(s)	334
BsiEI	CGRYCG	1 cut(s)	334
BsiWI	CGTACG	1 cut(s)	335
Bsp143I	GATC	4 cut(s)	93, 160, 175, 375
BspACI	CCGC	1 cut(s)	164
BspPI	GGATC	4 cut(s)	88, 155, 170, 370
BssMI	GATC	4 cut(s)	93, 160, 175, 375
BssNAI	GTATAC	1 cut(s)	88
Bst1107I	GTATAC	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	356
BstBAI	YACGTR	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	25
BstF5I	GGATG	3 cut(s)	24, 110, 393
BstKTI	GATC	4 cut(s)	96, 163, 178, 378
BstMBI	GATC	4 cut(s)	93, 160, 175, 375
BstMCI	CGRYCG	1 cut(s)	334
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 289
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	43
BstSNI	TACGTA	1 cut(s)	339
BstXI	CCANNNNNNTGG	1 cut(s)	105
BstZ17I	GTATAC	1 cut(s)	88
BtsCI	GGATG	3 cut(s)	24, 110, 393
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	1 cut(s)	25
Csp6I	GTAC	3 cut(s)	113, 328, 336
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	6 cut(s)	12, 53, 62, 208, 220, 283
CviKI_1	RGCY	6 cut(s)	12, 53, 62, 208, 220, 283
CviQI	GTAC	3 cut(s)	113, 328, 336
DpnI	GATC	4 cut(s)	95, 162, 177, 377
DpnII	GATC	4 cut(s)	93, 160, 175, 375
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Eco105I	TACGTA	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	337
EcoRI	GAATTC	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	262
FaeI	CATG	1 cut(s)	235
FaiI	YATR	7 cut(s)	88, 141, 199, 201, 233, 255, 342
FalI	AAGNNNNNCTT	1 cut(s)	28
FatI	CATG	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	87
FokI	GGATG	3 cut(s)	31, 117, 380
FspBI	CTAG	1 cut(s)	284
Hin1II	CATG	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HpaI	GTTAAC	1 cut(s)	316
Hpy166II	GTNNAC	2 cut(s)	88, 316
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	2 cut(s)	146, 183
Hpy8I	GTNNAC	2 cut(s)	88, 316
HpyAV	CCTTC	1 cut(s)	198
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	2 cut(s)	227, 338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 289
HpySE526I	ACGT	2 cut(s)	227, 338
Hsp92II	CATG	1 cut(s)	235
KspAI	GTTAAC	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	93, 160, 175, 375
LpnPI	CCDG	6 cut(s)	55, 159, 249, 271, 276, 310
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	2 cut(s)	227, 338
MalI	GATC	4 cut(s)	95, 162, 177, 377
MboI	GATC	4 cut(s)	93, 160, 175, 375
MboII	GAAGA	2 cut(s)	80, 343
MluCI	AATT	3 cut(s)	170, 249, 409
MnlI	CCTC	4 cut(s)	9, 184, 389, 392
MseI	TTAA	3 cut(s)	315, 413, 422
MslI	CAYNNNNRTG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	59, 289
NdeII	GATC	4 cut(s)	93, 160, 175, 375
NlaIII	CATG	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
Pfl23II	CGTACG	1 cut(s)	335
PfoI	TCCNGGA	1 cut(s)	262
Ppu21I	YACGTR	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspLI	CGTACG	1 cut(s)	335
RsaI	GTAC	3 cut(s)	114, 329, 337
RsaNI	GTAC	3 cut(s)	113, 328, 336
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	3 cut(s)	315, 413, 422
Sau3AI	GATC	4 cut(s)	93, 160, 175, 375
ScaI	AGTACT	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	264
SetI	ASST	9 cut(s)	14, 44, 55, 64, 230, 260, 285, 329, 341
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SnaBI	TACGTA	1 cut(s)	339
Sse9I	AATT	3 cut(s)	170, 249, 409
SsiI	CCGC	1 cut(s)	164
SspI	AATATT	1 cut(s)	152
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	2 cut(s)	230, 341
TaqI	TCGA	3 cut(s)	57, 66, 174
TasI	AATT	3 cut(s)	170, 249, 409
TatI	WGTACW	1 cut(s)	112
Tru1I	TTAA	3 cut(s)	315, 413, 422
Tru9I	TTAA	3 cut(s)	315, 413, 422
TscAI	CASTG	1 cut(s)	378
TspDTI	ATGAA	6 cut(s)	17, 125, 220, 242, 285, 382
TspRI	CASTG	1 cut(s)	378
XapI	RAATTY	2 cut(s)	170, 249
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	284
ZrmI	AGTACT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.