Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005727

Physical Location & Seq

Genomic Coordinates Forward (+)

852470 .. 853468

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g00890.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAATTGAATATCTTGAACTCCATGTTTTGCATCTTTGCCTTTGTTTTGTTCTTCCTCTTTGTCATCAATTCCCTCATCACCAAGCTCTTCACTCCGAACCGCCGGAAAATCCCACTTCCGCCGGGTTCCTTAGGCTGGCCTTACATTGGAGAAACCTTCCAACTCTACTCTCAAGACCCAAATGTCTTCTTTGCCTCAAAACAAAAGAGGTTTGGGTCGATCTTCAAAACCCACATCTTGGGTTGTCCCTGTGTGATGATTTCGAGCCCCGAAGCGGCGAAATTTGTGCTTTCTCGAGCCCATCTGTTCAAGCCAACTTTTCCGGCGAGCAAAGAGAGGATGTTGGGGAAAGAAGCCATCTTTTTCCACCAAGGAGATTACCATGCCAAATTGAGAAAGCTTGTCCTCCGTGCGTTCATGCCGGAAGCCATCAGAAGTATCGTCCCTGACATTGAATCCATTGCCAAAGACTCTCTCAAGTCCTGCCAAGGCCGCTTGATCAACACCTTCCAAGAAATGAAAACGTTCACATTCAATGTTGCACTCCTTTCTATATTTGGTAAGGATGAGATTCTGTACAGAGAGGATCGATCTGAAGAGGTGCTACTACATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0006066 GO:0006082 GO:0006629 GO:0006694 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009639 GO:0009687 GO:0009987 GO:0010035 GO:0010268 GO:0010295 GO:0010817 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042592 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046164 GO:0046345 GO:0046395 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901617 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

207

Amino Acids

23.67

Weight (kDa)

9.43

Isoelectric Point (pI)

49.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19230 AT4G19230 AT5G45340 AT5G45340
fragaria_vesca	FvH4_5g25150 FvH4_5g25150 FvH4_5g25150 FvH4_5g25150 FvH4_5g25150
malus_domestica	MD06G1010900.v1.1 MD11G1240500.v1.1 MD16G1285900.v1.1
prunus_persica	Prupe.5G013100_v2.0.a1 Prupe.5G013100_v2.0.a1
pyrus_communis	pycom06g00890 pycom06g00900 pycom16g25780
rosa_chinensis	RchiOBHm_Chr7g0215351
rosa_laevigata	RLG00000002668
rosa_multiflora	Rmu_co8050526.1_g000001 Rmu_sc0000765.1_g000031
rosa_roxburghii	Rroxscaffold_3G00244250
rosa_rugosa	Rorug07G0152600
rosa_samantha	Rh7AG289200 Rh7BG281100 Rh7CG309000 Rh7DG292800
rosa_wichuraiana	Rw7G024720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AccB7I	CCANNNNNTGG	1 cut(s)	241
AciI	CCGC	4 cut(s)	103, 122, 278, 496
AclI	AACGTT	1 cut(s)	527
AclWI	GGATC	1 cut(s)	597
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	618
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	4 cut(s)	138, 149, 241, 277
AgsI	TTSAA	6 cut(s)	10, 19, 229, 313, 458, 538
AluBI	AGCT	2 cut(s)	88, 403
AluI	AGCT	2 cut(s)	88, 403
AlwI	GGATC	1 cut(s)	597
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	2 cut(s)	140, 493
ApoI	RAATTY	1 cut(s)	284
Asp700I	GAANNNNTTC	1 cut(s)	527
AsuC2I	CCSGG	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	297
AxyI	CCTNAGG	1 cut(s)	133
BanII	GRGCYC	2 cut(s)	272, 304
BarI	GAAGNNNNNNTAC	1 cut(s)	591
BbsI	GAAGAC	1 cut(s)	181
BccI	CCATC	3 cut(s)	312, 368, 440
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BclI	TGATCA	1 cut(s)	501
BcnI	CCSGG	1 cut(s)	126
BisI	GCNGC	2 cut(s)	279, 496
BlsI	GCNGC	2 cut(s)	280, 497
Bme1390I	CCNGG	1 cut(s)	126
BmeT110I	CYCGRG	1 cut(s)	297
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	181
BpuEI	CTTGAG	2 cut(s)	159, 464
BpuMI	CCSGG	1 cut(s)	126
Bsa29I	ATCGAT	1 cut(s)	592
BsaJI	CCNNGG	2 cut(s)	373, 490
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 149, 241, 277
Bse21I	CCTNAGG	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	462
BseCI	ATCGAT	1 cut(s)	592
BseDI	CCNNGG	2 cut(s)	373, 490
BseGI	GGATG	2 cut(s)	348, 574
BseLI	CCNNNNNNNGG	4 cut(s)	138, 149, 241, 277
BseMI	GCAATG	1 cut(s)	462
BshFI	GGCC	2 cut(s)	142, 495
BshVI	ATCGAT	1 cut(s)	592
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	4 cut(s)	106, 125, 326, 425
BslFI	GGGAC	2 cut(s)	234, 431
BslI	CCNNNNNNNGG	4 cut(s)	138, 149, 241, 277
BsmFI	GGGAC	2 cut(s)	234, 431
BsnI	GGCC	2 cut(s)	142, 495
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	2 cut(s)	272, 304
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	4 cut(s)	222, 501, 589, 593
BspACI	CCGC	4 cut(s)	103, 122, 278, 496
BspANI	GGCC	2 cut(s)	142, 495
BspDI	ATCGAT	1 cut(s)	592
BspLI	GGNNCC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	597
BspQI	GCTCTTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	462
BsrGI	TGTACA	1 cut(s)	579
BssECI	CCNNGG	2 cut(s)	373, 490
BssMI	GATC	4 cut(s)	222, 501, 589, 593
BssT1I	CCWWGG	2 cut(s)	373, 490
Bst6I	CTCTTC	2 cut(s)	95, 594
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	2 cut(s)	140, 331
BstDEI	CTNAG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	348, 574
BstKTI	GATC	4 cut(s)	225, 504, 592, 596
BstMBI	GATC	4 cut(s)	222, 501, 589, 593
BstMWI	GCNNNNNNNGC	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	181
Bsu15I	ATCGAT	1 cut(s)	592
Bsu36I	CCTNAGG	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	142, 495
BsuTUI	ATCGAT	1 cut(s)	592
BtsCI	GGATG	2 cut(s)	348, 574
Cac8I	GCNNGC	2 cut(s)	140, 331
ClaI	ATCGAT	1 cut(s)	592
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	3 cut(s)	25, 386, 421
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	1 cut(s)	133
DpnI	GATC	4 cut(s)	224, 503, 591, 595
DpnII	GATC	4 cut(s)	222, 501, 589, 593
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
Eam1104I	CTCTTC	2 cut(s)	95, 594
EarI	CTCTTC	2 cut(s)	95, 594
EciI	GGCGGA	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	373, 490
Eco24I	GRGCYC	2 cut(s)	272, 304
Eco57I	CTGAAG	1 cut(s)	618
Eco81I	CCTNAGG	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	297
EcoT14I	CCWWGG	2 cut(s)	373, 490
EcoT38I	GRGCYC	2 cut(s)	272, 304
ErhI	CCWWGG	2 cut(s)	373, 490
FaeI	CATG	3 cut(s)	28, 389, 424
FaiI	YATR	4 cut(s)	26, 387, 422, 557
FaqI	GGGAC	2 cut(s)	234, 431
FatI	CATG	3 cut(s)	24, 385, 420
FbaI	TGATCA	1 cut(s)	501
Fnu4HI	GCNGC	2 cut(s)	279, 496
FokI	GGATG	2 cut(s)	355, 581
FriOI	GRGCYC	2 cut(s)	272, 304
Fsp4HI	GCNGC	2 cut(s)	279, 496
GluI	GCNGC	2 cut(s)	279, 496
HaeIII	GGCC	2 cut(s)	142, 495
HapII	CCGG	4 cut(s)	106, 125, 326, 425
Hin1II	CATG	3 cut(s)	28, 389, 424
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	3 cut(s)	458, 473, 574
HpaII	CCGG	4 cut(s)	106, 125, 326, 425
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	531
Hpy188I	TCNGA	3 cut(s)	99, 437, 598
Hpy188III	TCNNGA	4 cut(s)	16, 176, 297, 618
Hpy8I	GTNNAC	1 cut(s)	531
HpyAV	CCTTC	2 cut(s)	169, 520
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	2 cut(s)	33, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	495
HpyF3I	CTNAG	1 cut(s)	133
HpySE526I	ACGT	1 cut(s)	527
Hsp92II	CATG	3 cut(s)	28, 389, 424
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	4 cut(s)	222, 501, 589, 593
LguI	GCTCTTC	1 cut(s)	95
LpnPI	CCDG	8 cut(s)	119, 124, 138, 265, 339, 438, 462, 499
LweI	GCATC	1 cut(s)	42
MaeII	ACGT	1 cut(s)	527
MalI	GATC	4 cut(s)	224, 503, 591, 595
MboI	GATC	4 cut(s)	222, 501, 589, 593
MboII	GAAGA	5 cut(s)	46, 82, 181, 217, 611
MhlI	GDGCHC	2 cut(s)	272, 304
MluCI	AATT	4 cut(s)	5, 70, 284, 392
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	8 cut(s)	68, 86, 204, 208, 333, 419, 580, 595
MroXI	GAANNNNTTC	1 cut(s)	527
MspI	CCGG	4 cut(s)	106, 125, 326, 425
MspR9I	CCNGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	495
NciI	CCSGG	1 cut(s)	126
NdeII	GATC	4 cut(s)	222, 501, 589, 593
NlaIII	CATG	3 cut(s)	28, 389, 424
NlaIV	GGNNCC	1 cut(s)	130
PaeR7I	CTCGAG	1 cut(s)	297
PciSI	GCTCTTC	1 cut(s)	95
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	2 cut(s)	458, 574
PflMI	CCANNNNNTGG	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	280, 497
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
Psp1406I	AACGTT	1 cut(s)	527
PspN4I	GGNNCC	1 cut(s)	130
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
SapI	GCTCTTC	1 cut(s)	95
SatI	GCNGC	2 cut(s)	279, 496
Sau3AI	GATC	4 cut(s)	222, 501, 589, 593
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	2 cut(s)	272, 304
SetI	ASST	7 cut(s)	90, 161, 215, 405, 512, 530, 606
SfaNI	GCATC	1 cut(s)	42
Sfr274I	CTCGAG	1 cut(s)	297
SlaI	CTCGAG	1 cut(s)	297
SmlI	CTYRAG	3 cut(s)	174, 297, 479
SmoI	CTYRAG	3 cut(s)	174, 297, 479
Sse9I	AATT	4 cut(s)	5, 70, 284, 392
SsiI	CCGC	4 cut(s)	103, 122, 278, 496
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	2 cut(s)	373, 490
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	4 cut(s)	221, 266, 298, 592
TasI	AATT	4 cut(s)	5, 70, 284, 392
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	2 cut(s)	281, 498
TfiI	GAWTC	2 cut(s)	458, 574
TspDTI	ATGAA	2 cut(s)	409, 536
TspGWI	ACGGA	1 cut(s)	401
Van91I	CCANNNNNTGG	1 cut(s)	241
XapI	RAATTY	1 cut(s)	284
XhoI	CTCGAG	1 cut(s)	297
XmnI	GAANNNNTTC	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.