Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000765.1

Orthogroup ID

OG0005727

Physical Location & Seq

Genomic Coordinates Forward (+)

121974 .. 122626

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000765.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgaggcttaaagaagagagtggcgaagacaaggctctgaattgggaagataccaagaagatgcccattacttcgagggttcttcaggagacactgcgagttgcttccatcttatcttttacatttagggaagctgtcgaagatgttgagtacgaaggttatctgataccaaaagggtggaaaattttaccacttttcagaaacattcaccacagcccggagatctttccggagcctgagaagtttgatcccacgtggataaacttgcgccaagtgaaatcagtatatcaaagcatgttagccacattaactgtaccttgtctctgcagctctagattcaaccgacagagcaacttgccaatcctcaaacaaattaggatactcttcaggatcagccaaagactcagcagcttttggattaacctggcaacatttgatcacaataaaactatattagtgaacaagaatgcacaagtggctgcacatcaatgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0006066 GO:0006082 GO:0006629 GO:0006694 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009639 GO:0009687 GO:0009987 GO:0010035 GO:0010268 GO:0010295 GO:0010817 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042592 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046164 GO:0046345 GO:0046395 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901617 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

164

Amino Acids

19.19

Weight (kDa)

9.24

Isoelectric Point (pI)

63.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19230 AT4G19230 AT5G45340 AT5G45340
fragaria_vesca	FvH4_5g25150 FvH4_5g25150 FvH4_5g25150 FvH4_5g25150 FvH4_5g25150
malus_domestica	MD06G1010900.v1.1 MD11G1240500.v1.1 MD16G1285900.v1.1
prunus_persica	Prupe.5G013100_v2.0.a1 Prupe.5G013100_v2.0.a1
pyrus_communis	pycom06g00890 pycom06g00900 pycom16g25780
rosa_chinensis	RchiOBHm_Chr7g0215351
rosa_laevigata	RLG00000002668
rosa_multiflora	Rmu_co8050526.1_g000001 Rmu_sc0000765.1_g000031
rosa_roxburghii	Rroxscaffold_3G00244250
rosa_rugosa	Rorug07G0152600
rosa_samantha	Rh7AG289200 Rh7BG281100 Rh7CG309000 Rh7DG292800
rosa_wichuraiana	Rw7G024720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	229
AclWI	GGATC	2 cut(s)	242, 398
AcsI	RAATTY	1 cut(s)	183
AcuI	CTGAAG	2 cut(s)	68, 370
AcvI	CACGTG	1 cut(s)	255
AfaI	GTAC	2 cut(s)	152, 315
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	1 cut(s)	340
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	3 cut(s)	134, 330, 411
AluI	AGCT	3 cut(s)	134, 330, 411
Alw26I	GTCTC	2 cut(s)	83, 326
AlwI	GGATC	2 cut(s)	242, 398
Aor13HI	TCCGGA	1 cut(s)	229
ApeKI	GCWGC	3 cut(s)	327, 408, 479
ApoI	RAATTY	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	270
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	200
BbrPI	CACGTG	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	33
BbvI	GCAGC	3 cut(s)	339, 420, 466
BccI	CCATC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	425
BciVI	GTATCC	1 cut(s)	372
BclI	TGATCA	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	2 cut(s)	83, 326
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	325
BfuI	GTATCC	1 cut(s)	372
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	3 cut(s)	328, 409, 480
BlsI	GCNGC	3 cut(s)	329, 410, 481
Bme1390I	CCNGG	2 cut(s)	218, 425
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	2 cut(s)	218, 425
BmsI	GCATC	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	255
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
BseAI	TCCGGA	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	425
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	228, 418
BseXI	GCAGC	3 cut(s)	339, 420, 466
BsgI	GTGCAG	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	218, 230
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	2 cut(s)	83, 326
BsmI	GAATGC	1 cut(s)	472
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	4 cut(s)	222, 247, 390, 436
BspCNI	CTCAG	2 cut(s)	229, 417
BspEI	TCCGGA	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	234
BspMAI	CTGCAG	1 cut(s)	329
BspPI	GGATC	2 cut(s)	242, 398
BssMI	GATC	4 cut(s)	222, 247, 390, 436
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	1 cut(s)	313
Bst6I	CTCTTC	2 cut(s)	9, 389
BstBAI	YACGTR	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	237, 404
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	4 cut(s)	225, 250, 393, 439
BstMAI	GTCTC	2 cut(s)	83, 326
BstMBI	GATC	4 cut(s)	222, 247, 390, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstNI	CCWGG	1 cut(s)	425
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	2 cut(s)	216, 423
BstSFI	CTRYAG	1 cut(s)	325
BstV1I	GCAGC	3 cut(s)	339, 420, 466
BstV2I	GAAGAC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	222
BstXI	CCANNNNNNTGG	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	222
BsuI	GTATCC	1 cut(s)	372
BtsI	GCAGTG	1 cut(s)	92
BtsIMutI	CAGTG	1 cut(s)	92
CfoI	GCGC	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	151, 314
CviAII	CATG	1 cut(s)	295
CviQI	GTAC	2 cut(s)	151, 314
DdeI	CTNAG	2 cut(s)	237, 404
DpnI	GATC	4 cut(s)	224, 249, 392, 438
DpnII	GATC	4 cut(s)	222, 247, 390, 436
Eam1104I	CTCTTC	2 cut(s)	9, 389
EarI	CTCTTC	2 cut(s)	9, 389
Eco57I	CTGAAG	2 cut(s)	68, 370
Eco72I	CACGTG	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	423
FaeI	CATG	1 cut(s)	298
FaiI	YATR	3 cut(s)	286, 296, 452
FatI	CATG	1 cut(s)	294
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	3 cut(s)	328, 409, 480
Fsp4HI	GCNGC	3 cut(s)	328, 409, 480
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	3 cut(s)	328, 409, 480
HapII	CCGG	2 cut(s)	218, 230
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HinfI	GANTC	2 cut(s)	336, 402
HpaII	CCGG	2 cut(s)	218, 230
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	3 cut(s)	39, 165, 200
Hpy188III	TCNNGA	4 cut(s)	86, 230, 333, 388
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	3 cut(s)	327, 470, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	2 cut(s)	237, 404
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	1 cut(s)	268
Kpn2I	TCCGGA	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	4 cut(s)	222, 247, 390, 436
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	7 cut(s)	71, 231, 243, 249, 373, 410, 437
Lsp1109I	GCAGC	3 cut(s)	339, 420, 466
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	1 cut(s)	254
MalI	GATC	4 cut(s)	224, 249, 392, 438
MboI	GATC	4 cut(s)	222, 247, 390, 436
MboII	GAAGA	7 cut(s)	26, 38, 59, 70, 74, 152, 376
MflI	RGATCY	1 cut(s)	222
MluCI	AATT	3 cut(s)	40, 183, 372
MlyI	GAGTC	1 cut(s)	396
MnlI	CCTC	2 cut(s)	69, 374
MroI	TCCGGA	1 cut(s)	229
MseI	TTAA	3 cut(s)	9, 308, 420
MslI	CAYNNNNRTG	1 cut(s)	487
MspI	CCGG	2 cut(s)	218, 230
MspR9I	CCNGG	2 cut(s)	218, 425
Mva1269I	GAATGC	1 cut(s)	472
MvaI	CCWGG	1 cut(s)	425
MwoI	GCNNNNNNNGC	1 cut(s)	476
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	4 cut(s)	222, 247, 390, 436
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	234
NspI	RCATGY	1 cut(s)	298
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	336
PkrI	GCNGC	3 cut(s)	329, 410, 481
PleI	GAGTC	1 cut(s)	396
PmaCI	CACGTG	1 cut(s)	255
PmlI	CACGTG	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	396
Ppu21I	YACGTR	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	423
PspCI	CACGTG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	1 cut(s)	234
PstI	CTGCAG	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	222
RsaI	GTAC	2 cut(s)	152, 315
RsaNI	GTAC	2 cut(s)	151, 314
RseI	CAYNNNNRTG	1 cut(s)	487
SaqAI	TTAA	3 cut(s)	9, 308, 420
SatI	GCNGC	3 cut(s)	328, 409, 480
Sau3AI	GATC	4 cut(s)	222, 247, 390, 436
SchI	GAGTC	1 cut(s)	396
ScrFI	CCNGG	2 cut(s)	218, 425
SetI	ASST	7 cut(s)	136, 160, 257, 319, 332, 413, 426
SfaNI	GCATC	1 cut(s)	51
SfcI	CTRYAG	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	487
Sse9I	AATT	3 cut(s)	40, 183, 372
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	216, 423
TaaI	ACNGT	1 cut(s)	313
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	2 cut(s)	74, 138
TasI	AATT	3 cut(s)	40, 183, 372
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	3 cut(s)	9, 308, 420
Tru9I	TTAA	3 cut(s)	9, 308, 420
TscAI	CASTG	1 cut(s)	99
TseI	GCWGC	3 cut(s)	327, 408, 479
TspRI	CASTG	1 cut(s)	99
XapI	RAATTY	1 cut(s)	183
XbaI	TCTAGA	1 cut(s)	332
XceI	RCATGY	1 cut(s)	298
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.