Rroxscaffold_3G00244250

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
36829557 .. 36832468
2912 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00244250.1

Sequence Viewer

Length: 1413 bp
ATGGAATTACTCAGCCTCAACTCCATGTTTTGCATGTTTGCTGCTTCTGCTCTCATCTTCTTCTTCTCTCCCATCATCAAGCTCTTCCTCATTTCCGCTCGCCGCAAAATCCCACTTCCTCCTGGTTCCCTCGGTTGGCCTTATATCGGCGAGACCTTCCAACTCTACTCTCAAAACCCAAATGTCTTCTTCGCCTCTAAAATCAAGAGGTTCGGCTCAATCTTCAAGACCCACATCTTGGGATGTCCTTGCGTGATGATTTCTAGTCCGGCAGCTGCCAAATTCGTGCTCTTGACGAAAGCCCATCTGTTCAAGCCTACTTTTCCGGCGAGTAAAGAAAGGATGCTGGGAAAACAAGCCATATTTTTCCACCAAGGAGCCTACCACGCCAAGTTGAGGAAGCTTGTTCTCCGAGCCTTCATGCCGGCAGCCCTCAAAAACAGAGTCGAAGACATTGAATCCCTCGCCAAGGACTCCCTTCAGTCCTGGGAAGGCCGGTCGATCAACACCTACCAAGAAATGAAGACGTTCACGTTCAATGTCGCACTGCTTTCCATCTTTGGCAAAGATGAGATTCTGTACAGAGAGGATCTCAAGAGGTGCTACTACATTCTCGAGAAGGGTTACAATTCAATGCCCATTAATATTCCTGGAACACTCTTCCACAAGTCTATGAAAGCCAGGAAGGAGCTGGCTCAGATCTTGGCCAAAATCATCTCAACCAGGAGAGAAGGCAAGCTCGAGGACCATAACGACCTTCTCGAGTCCTTCATGAGCGACAAAGAAGGCCTCACCGACGAGCAAATCGCCGACAACGTCATCGGGGTCATCTTCGCCGCCCGCGACACGACGGCGAGCGTTTTGACTTGGATTATGAAGTATCTCGGCGAAAACCAGAGTGTTCTTGAAGCTGTCACGGAAGAGCAAGAAGCAATTATGAGGCTTAAAGAAGAGAGTGGCGAAGACAAGGTTCTGAATTGGGAAGATACCAAGAAGATGCCCATTACTTCGAGAGTTCTTCAGGAGACACTGCGAGTTGCTTCCATCTTATCTTTCACATTTAGGGAAGCTGTCGAAGATGTTGAGTACGAAGGTTATCTGATACCCAAAGGGTGGAAAATTTTACCACTTTTCAGAAACATTCACCACAGCCCGGAGATCTTTCCGGAGCCTGAGAAGTTTGATCCGACAAGATTTGAGGTAGCTCCAAAACCCAATACATACATGCCATTCGGCAGTGGGAACCACTCATGTCCGGGGAATGAATTGGCCAAGCTGGAGATTTTGGTCATTCTACACCATCTCACAACAAAGTACAGGTGGTCTATTGTTGGTGCAGGCAATGGCATACAGTATGGCCCTTTTGCTCTTCCCCAAAATGGGCTGCCCATCATATTATCTTCCAAGGAATGA

Protein Analysis

470

Amino Acids

53.44

Weight (kDa)

8.81

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 40 - 443 5.6e-73 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 238, 1113
AccBSI CCGCTC 1 cut(s) 98
AccII CGCG 1 cut(s) 843
AccIII TCCGGA 1 cut(s) 1165
AciI CCGC 4 cut(s) 96, 103, 837, 841
AclWI GGATC 2 cut(s) 597, 1178
AcoI YGGCCR 2 cut(s) 705, 1269
AcsI RAATTY 2 cut(s) 281, 1119
AcuI CTGAAG 2 cut(s) 464, 1004
AfaI GTAC 3 cut(s) 581, 1088, 1316
AfiI CCNNNNNNNGG 9 cut(s) 135, 146, 238, 396, 469, 1113, 1153, 1379, 1380
AgsI TTSAA 6 cut(s) 226, 313, 458, 538, 633, 908
AjnI CCWGG 5 cut(s) 121, 485, 649, 680, 722
AluBI AGCT 9 cut(s) 82, 275, 403, 691, 739, 911, 1070, 1205, 1276
AluI AGCT 9 cut(s) 82, 275, 403, 691, 739, 911, 1070, 1205, 1276
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 2 cut(s) 146, 1019
AlwI GGATC 2 cut(s) 597, 1178
Ama87I CYCGRG 3 cut(s) 614, 740, 761
Aor13HI TCCGGA 1 cut(s) 1165
AoxI GGCC 6 cut(s) 137, 493, 705, 787, 1269, 1357
ApeKI GCWGC 5 cut(s) 41, 272, 275, 428, 1384
ApoI RAATTY 2 cut(s) 281, 1119
ArsI GACNNNNNNTTYG 2 cut(s) 429, 461
AseI ATTAAT 1 cut(s) 642
Asp700I GAANNNNTTC 1 cut(s) 527
AspS9I GGNCC 2 cut(s) 745, 1358
AsuC2I CCSGG 2 cut(s) 1154, 1257
AsuHPI GGTGA 2 cut(s) 784, 1136
AvaI CYCGRG 3 cut(s) 614, 740, 761
AvaII GGWCC 1 cut(s) 745
BalI TGGCCA 2 cut(s) 707, 1271
BbsI GAAGAC 4 cut(s) 178, 456, 530, 969
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 5 cut(s) 28, 262, 284, 440, 1371
BccI CCATC 6 cut(s) 80, 312, 563, 1052, 1308, 1397
BceAI ACGGC 1 cut(s) 867
BciT130I CCWGG 5 cut(s) 123, 487, 651, 682, 724
BcnI CCSGG 2 cut(s) 1154, 1257
BcoDI GTCTC 2 cut(s) 146, 1019
BfaI CTAG 1 cut(s) 264
BglII AGATCT 2 cut(s) 699, 1158
BisI GCNGC 7 cut(s) 42, 103, 273, 276, 429, 837, 1385
BlsI GCNGC 7 cut(s) 43, 104, 274, 277, 430, 838, 1386
Bme1390I CCNGG 7 cut(s) 123, 487, 651, 682, 724, 1154, 1257
Bme18I GGWCC 1 cut(s) 745
BmeT110I CYCGRG 3 cut(s) 614, 740, 761
BmgT120I GGNCC 2 cut(s) 745, 1358
BmiI GGNNCC 4 cut(s) 127, 379, 1170, 1244
BmrFI CCNGG 7 cut(s) 123, 487, 651, 682, 724, 1154, 1257
BmsI GCATC 2 cut(s) 333, 987
BpiI GAAGAC 4 cut(s) 178, 456, 530, 969
BplI GAGNNNNNCTC 2 cut(s) 576, 608
BpmI CTGGAG 1 cut(s) 1298
BpuEI CTTGAG 1 cut(s) 578
BpuMI CCSGG 2 cut(s) 1154, 1257
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 6 cut(s) 130, 373, 468, 486, 1256, 1404
BsaWI WCCGGW 1 cut(s) 1165
Bsc4I CCNNNNNNNGG 9 cut(s) 135, 146, 238, 396, 469, 1113, 1153, 1379, 1380
Bse118I RCCGGY 2 cut(s) 424, 495
Bse3DI GCAATG 1 cut(s) 1348
BseAI TCCGGA 1 cut(s) 1165
BseBI CCWGG 5 cut(s) 123, 487, 651, 682, 724
BseDI CCNNGG 6 cut(s) 130, 373, 468, 486, 1256, 1404
BseGI GGATG 2 cut(s) 248, 348
BseLI CCNNNNNNNGG 9 cut(s) 135, 146, 238, 396, 469, 1113, 1153, 1379, 1380
BseMI GCAATG 1 cut(s) 1348
BseMII CTCAG 3 cut(s) 25, 710, 1164
BseXI GCAGC 5 cut(s) 28, 262, 284, 440, 1371
BseYI CCCAGC 1 cut(s) 346
BsgI GTGCAG 1 cut(s) 1356
Bsh1236I CGCG 1 cut(s) 843
Bsh1285I CGRYCG 1 cut(s) 500
BshFI GGCC 6 cut(s) 139, 495, 707, 789, 1271, 1359
BsiEI CGRYCG 1 cut(s) 500
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 3 cut(s) 614, 740, 761
BsiSI CCGG 7 cut(s) 269, 326, 425, 496, 1154, 1166, 1256
BslI CCNNNNNNNGG 9 cut(s) 135, 146, 238, 396, 469, 1113, 1153, 1379, 1380
BsmAI GTCTC 2 cut(s) 146, 1019
BsnI GGCC 6 cut(s) 139, 495, 707, 789, 1271, 1359
Bso31I GGTCTC 1 cut(s) 146
BsoBI CYCGRG 3 cut(s) 614, 740, 761
Bsp1286I GDGCHC 1 cut(s) 291
Bsp13I TCCGGA 1 cut(s) 1165
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 5 cut(s) 501, 589, 699, 1158, 1183
BspACI CCGC 4 cut(s) 96, 103, 837, 841
BspANI GGCC 6 cut(s) 139, 495, 707, 789, 1271, 1359
BspCNI CTCAG 3 cut(s) 24, 709, 1165
BspEI TCCGGA 1 cut(s) 1165
BspFNI CGCG 1 cut(s) 843
BspHI TCATGA 1 cut(s) 771
BspLI GGNNCC 4 cut(s) 127, 379, 1170, 1244
BspPI GGATC 2 cut(s) 597, 1178
BspQI GCTCTTC 3 cut(s) 89, 915, 1374
BspTNI GGTCTC 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 1348
BsrFI RCCGGY 2 cut(s) 424, 495
BsrGI TGTACA 1 cut(s) 579
BssAI RCCGGY 2 cut(s) 424, 495
BssECI CCNNGG 6 cut(s) 130, 373, 468, 486, 1256, 1404
BssMI GATC 5 cut(s) 501, 589, 699, 1158, 1183
BssT1I CCWWGG 3 cut(s) 373, 468, 1404
Bst2UI CCWGG 5 cut(s) 123, 487, 651, 682, 724
Bst4CI ACNGT 1 cut(s) 1353
Bst6I CTCTTC 5 cut(s) 89, 665, 915, 945, 1374
BstAUI TGTACA 1 cut(s) 579
BstC8I GCNNGC 7 cut(s) 100, 426, 693, 737, 841, 856, 1339
BstDEI CTNAG 3 cut(s) 11, 696, 1173
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 2 cut(s) 248, 348
BstFNI CGCG 1 cut(s) 843
BstKTI GATC 5 cut(s) 504, 592, 702, 1161, 1186
BstMAI GTCTC 2 cut(s) 146, 1019
BstMBI GATC 5 cut(s) 501, 589, 699, 1158, 1183
BstMCI CGRYCG 1 cut(s) 500
BstMWI GCNNNNNNNGC 2 cut(s) 47, 386
BstNI CCWGG 5 cut(s) 123, 487, 651, 682, 724
BstNSI RCATGY 2 cut(s) 37, 1228
BstSCI CCNGG 7 cut(s) 121, 485, 649, 680, 722, 1152, 1255
BstUI CGCG 1 cut(s) 843
BstV1I GCAGC 5 cut(s) 28, 262, 284, 440, 1371
BstV2I GAAGAC 4 cut(s) 178, 456, 530, 969
BstX2I RGATCY 3 cut(s) 589, 699, 1158
BstYI RGATCY 3 cut(s) 589, 699, 1158
BsuRI GGCC 6 cut(s) 139, 495, 707, 789, 1271, 1359
BtsCI GGATG 2 cut(s) 248, 348
BtsI GCAGTG 3 cut(s) 545, 1028, 1243
BtsIMutI CAGTG 3 cut(s) 545, 1028, 1243
Cac8I GCNNGC 7 cut(s) 100, 426, 693, 737, 841, 856, 1339
CciI TCATGA 1 cut(s) 771
Cfr10I RCCGGY 2 cut(s) 424, 495
Cfr13I GGNCC 2 cut(s) 745, 1358
Csp6I GTAC 3 cut(s) 580, 1087, 1315
CviAII CATG 6 cut(s) 25, 34, 421, 772, 1225, 1251
CviQI GTAC 3 cut(s) 580, 1087, 1315
DdeI CTNAG 3 cut(s) 11, 696, 1173
DpnI GATC 5 cut(s) 503, 591, 701, 1160, 1185
DpnII GATC 5 cut(s) 501, 589, 699, 1158, 1183
EaeI YGGCCR 2 cut(s) 705, 1269
Eam1104I CTCTTC 5 cut(s) 89, 665, 915, 945, 1374
EarI CTCTTC 5 cut(s) 89, 665, 915, 945, 1374
Eco130I CCWWGG 3 cut(s) 373, 468, 1404
Eco147I AGGCCT 1 cut(s) 789
Eco31I GGTCTC 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 745
Eco57I CTGAAG 2 cut(s) 464, 1004
Eco88I CYCGRG 3 cut(s) 614, 740, 761
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoRII CCWGG 5 cut(s) 121, 485, 649, 680, 722
EcoT14I CCWWGG 3 cut(s) 373, 468, 1404
ErhI CCWWGG 3 cut(s) 373, 468, 1404
FaeI CATG 6 cut(s) 28, 37, 424, 775, 1228, 1254
FatI CATG 6 cut(s) 24, 33, 420, 771, 1224, 1250
FauI CCCGC 1 cut(s) 848
Fnu4HI GCNGC 7 cut(s) 42, 103, 273, 276, 429, 837, 1385
FokI GGATG 2 cut(s) 255, 355
Fsp4HI GCNGC 7 cut(s) 42, 103, 273, 276, 429, 837, 1385
FspBI CTAG 1 cut(s) 264
GluI GCNGC 7 cut(s) 42, 103, 273, 276, 429, 837, 1385
GsaI CCCAGC 1 cut(s) 350
GsuI CTGGAG 1 cut(s) 1298
HaeIII GGCC 6 cut(s) 139, 495, 707, 789, 1271, 1359
HapII CCGG 7 cut(s) 269, 326, 425, 496, 1154, 1166, 1256
Hin1II CATG 6 cut(s) 28, 37, 424, 775, 1228, 1254
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 5 cut(s) 444, 458, 473, 574, 764
HpaII CCGG 7 cut(s) 269, 326, 425, 496, 1154, 1166, 1256
HphI GGTGA 2 cut(s) 784, 1136
Hpy166II GTNNAC 1 cut(s) 531
Hpy188I TCNGA 6 cut(s) 413, 699, 975, 1101, 1136, 1188
Hpy8I GTNNAC 1 cut(s) 531
Hpy99I CGWCG 2 cut(s) 800, 853
HpyCH4III ACNGT 1 cut(s) 1353
HpyCH4IV ACGT 3 cut(s) 527, 533, 816
HpyCH4V TGCA 2 cut(s) 33, 1337
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 386
HpyF3I CTNAG 3 cut(s) 11, 696, 1173
HpySE526I ACGT 3 cut(s) 527, 533, 816
Hsp92II CATG 6 cut(s) 28, 37, 424, 775, 1228, 1254
Kpn2I TCCGGA 1 cut(s) 1165
KroI GCCGGC 1 cut(s) 424
KroNI GCCGGC 1 cut(s) 426
Kzo9I GATC 5 cut(s) 501, 589, 699, 1158, 1183
LguI GCTCTTC 3 cut(s) 89, 915, 1374
LmnI GCTCC 4 cut(s) 377, 688, 1168, 1210
Lsp1109I GCAGC 5 cut(s) 28, 262, 284, 440, 1371
LweI GCATC 2 cut(s) 333, 987
MaeI CTAG 1 cut(s) 264
MaeII ACGT 3 cut(s) 527, 533, 816
MaeIII GTNAC 2 cut(s) 623, 913
MalI GATC 5 cut(s) 503, 591, 701, 1160, 1185
MbiI CCGCTC 1 cut(s) 98
MboI GATC 5 cut(s) 501, 589, 699, 1158, 1183
MflI RGATCY 3 cut(s) 589, 699, 1158
MhlI GDGCHC 1 cut(s) 291
MlsI TGGCCA 2 cut(s) 707, 1271
MluCI AATT 7 cut(s) 5, 281, 628, 933, 976, 1119, 1265
MluNI TGGCCA 2 cut(s) 707, 1271
MlyI GAGTC 3 cut(s) 453, 467, 773
MmeI TCCRAC 2 cut(s) 184, 1211
Mox20I TGGCCA 2 cut(s) 707, 1271
MroI TCCGGA 1 cut(s) 1165
MroNI GCCGGC 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 527
MscI TGGCCA 2 cut(s) 707, 1271
MseI TTAA 2 cut(s) 642, 945
Msp20I TGGCCA 2 cut(s) 707, 1271
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 7 cut(s) 269, 326, 425, 496, 1154, 1166, 1256
MspR9I CCNGG 7 cut(s) 123, 487, 651, 682, 724, 1154, 1257
MvaI CCWGG 5 cut(s) 123, 487, 651, 682, 724
MvnI CGCG 1 cut(s) 843
MwoI GCNNNNNNNGC 2 cut(s) 47, 386
NaeI GCCGGC 1 cut(s) 426
NciI CCSGG 2 cut(s) 1154, 1257
NdeII GATC 5 cut(s) 501, 589, 699, 1158, 1183
NgoMIV GCCGGC 1 cut(s) 424
NlaIII CATG 6 cut(s) 28, 37, 424, 775, 1228, 1254
NlaIV GGNNCC 4 cut(s) 127, 379, 1170, 1244
NmeAIII GCCGAG 1 cut(s) 864
NmuCI GTSAC 1 cut(s) 913
NspI RCATGY 2 cut(s) 37, 1228
PaeR7I CTCGAG 3 cut(s) 614, 740, 761
PagI TCATGA 1 cut(s) 771
PceI AGGCCT 1 cut(s) 789
PciSI GCTCTTC 3 cut(s) 89, 915, 1374
PcsI WCGNNNNNNNCGW 3 cut(s) 759, 813, 840
PdiI GCCGGC 1 cut(s) 426
PdmI GAANNNNTTC 1 cut(s) 527
PfeI GAWTC 2 cut(s) 458, 574
PflFI GACNNNGTC 1 cut(s) 815
PflMI CCANNNNNTGG 2 cut(s) 238, 1113
PfoI TCCNGGA 1 cut(s) 649
PkrI GCNGC 7 cut(s) 43, 104, 274, 277, 430, 838, 1386
PleI GAGTC 3 cut(s) 452, 467, 772
PpsI GAGTC 3 cut(s) 452, 467, 772
PshBI ATTAAT 1 cut(s) 642
Psp6I CCWGG 5 cut(s) 121, 485, 649, 680, 722
PspFI CCCAGC 1 cut(s) 346
PspGI CCWGG 5 cut(s) 121, 485, 649, 680, 722
PspN4I GGNNCC 4 cut(s) 127, 379, 1170, 1244
PspPI GGNCC 2 cut(s) 745, 1358
PspXI VCTCGAGB 1 cut(s) 740
PsuI RGATCY 3 cut(s) 589, 699, 1158
PsyI GACNNNGTC 1 cut(s) 815
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 3 cut(s) 581, 1088, 1316
RsaNI GTAC 3 cut(s) 580, 1087, 1315
SapI GCTCTTC 3 cut(s) 89, 915, 1374
SaqAI TTAA 2 cut(s) 642, 945
SatI GCNGC 7 cut(s) 42, 103, 273, 276, 429, 837, 1385
Sau3AI GATC 5 cut(s) 501, 589, 699, 1158, 1183
Sau96I GGNCC 2 cut(s) 745, 1358
SchI GAGTC 3 cut(s) 453, 467, 773
ScrFI CCNGG 7 cut(s) 123, 487, 651, 682, 724, 1154, 1257
SduI GDGCHC 1 cut(s) 291
SfaNI GCATC 2 cut(s) 333, 987
Sfr274I CTCGAG 3 cut(s) 614, 740, 761
SinI GGWCC 1 cut(s) 745
SlaI CTCGAG 3 cut(s) 614, 740, 761
SmlI CTYRAG 4 cut(s) 593, 614, 740, 761
SmoI CTYRAG 4 cut(s) 593, 614, 740, 761
Sse9I AATT 7 cut(s) 5, 281, 628, 933, 976, 1119, 1265
SseBI AGGCCT 1 cut(s) 789
SsiI CCGC 4 cut(s) 96, 103, 837, 841
SspI AATATT 1 cut(s) 646
SspMI CTAG 1 cut(s) 264
StuI AGGCCT 1 cut(s) 789
StyD4I CCNGG 7 cut(s) 121, 485, 649, 680, 722, 1152, 1255
StyI CCWWGG 3 cut(s) 373, 468, 1404
TaaI ACNGT 1 cut(s) 1353
TaiI ACGT 3 cut(s) 530, 536, 819
TaqI TCGA 7 cut(s) 447, 500, 615, 741, 762, 1010, 1074
TasI AATT 7 cut(s) 5, 281, 628, 933, 976, 1119, 1265
TatI WGTACW 2 cut(s) 579, 1314
TauI GCSGC 2 cut(s) 105, 839
TfiI GAWTC 2 cut(s) 458, 574
Tru1I TTAA 2 cut(s) 642, 945
Tru9I TTAA 2 cut(s) 642, 945
TscAI CASTG 3 cut(s) 552, 1035, 1243
TseFI GTSAC 1 cut(s) 913
TseI GCWGC 5 cut(s) 41, 272, 275, 428, 1384
Tsp45I GTSAC 1 cut(s) 913
TspDTI ATGAA 6 cut(s) 409, 536, 689, 760, 890, 1278
TspGWI ACGGA 1 cut(s) 932
TspRI CASTG 3 cut(s) 552, 1035, 1243
Tth111I GACNNNGTC 1 cut(s) 815
Van91I CCANNNNNTGG 2 cut(s) 238, 1113
VpaK11BI GGWCC 1 cut(s) 745
VspI ATTAAT 1 cut(s) 642
XagI CCTNNNNNAGG 1 cut(s) 467
XapI RAATTY 2 cut(s) 281, 1119
XceI RCATGY 2 cut(s) 37, 1228
XcmI CCANNNNNNNNNTGG 1 cut(s) 688
XhoI CTCGAG 3 cut(s) 614, 740, 761
XmnI GAANNNNTTC 1 cut(s) 527
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.