Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005727

Physical Location & Seq

Genomic Coordinates Reverse (-)

30671595 .. 30674675

Gene Structure 3081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G024720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGATTTCGAGTCCGGCAGCTGCCAAATTCGTGCTCTTGACGAAAGCCCATCTGTTCAAGCCTACTTTTCCGGCGAGTAAAGAAAGGATGCTGGGAAAACAAGCCATATTTTTCCACCAAGGAGACTACCACGCCAAGTTGAGGAAGCTTGTTCTCCGAGCCTTCATGCCGGCAGCCCTCAAAAACAAAGTCGAAGACATTGAATCCCTCGCCAAGGATTCCCTTCAGTCCTGGGAAGGCCGGTCGATCAACACCTACCAAGAAATGAAGACGTTCACGTTCAATGTCGCACTGCTTTCCATCTTTGGCAAAGATGAGATATTGTACAGAGAGGATCTCAAGAGGTGCTACTACATTCTCGAGAAGGGTTACAATTCAATGCCCATTAATATTCCTGGAACACTCTTCCACAAGTCCATGAAAGCCAGGAAGGAGCTGGCTCAGATCTTGGCCAAAATCATCTCAACCAGGAGAGAAAGCAAGCTCGAGGACCATAACGACCTTCTCGAGTCCTTCATGGGCGACAAAGAAGGCCTCACCGACGAGCAAATCGCCGACAACGTCATCGGCGTCATCTTCGCCGCCCGCGACACGACGGCGAGCGTTTTGACTTGGATTATGAAGTATCTCGGCGAAAACCAGAGTGTTCTTGAAGCTGTCACGGAAGAGCAAGAAGCAATTATGAGGCTTAAAGAAGAGAGTGGCGAAGACGAGGCTCTGAATTGGGAAGATACCAAGAAGATGCCCATTACTTCGAGGGTTCTTCAGGAGACACTGCGAGTTGCTTCCATCTTATCTTTTACATTTAGGGAAGCTGTCGAAGATGTTGAGTACGAAGGTTATCTGATACCAAAAGGGTGGAAAATTTTACCACTTTTCAGAAACATTCACCACAGCCCGGAGATCTTTCCGGAGCCTGAGAAGTTTGATCCCACAAGATTTGAGGTAGCTCCAAAACCCAATACATACATGCCATTCGGCAGTGGGAACCACTCATGTCCTGGGAATGAATTGGCCAAGCTGGAGATTTTGGTCATTCTACACCATCTCACAACAAAGTACAGGTGTGTAGTACGAAAAATTCTTACATCTCTCCGATCAAATTCCACTCAATTTTATTTGTATTTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0006066 GO:0006082 GO:0006629 GO:0006694 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009639 GO:0009687 GO:0009987 GO:0010035 GO:0010268 GO:0010295 GO:0010817 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042592 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046164 GO:0046345 GO:0046395 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901617 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

377

Amino Acids

43.32

Weight (kDa)

7.16

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 357	1.8e-62	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19230 AT4G19230 AT5G45340 AT5G45340
fragaria_vesca	FvH4_5g25150 FvH4_5g25150 FvH4_5g25150 FvH4_5g25150 FvH4_5g25150
malus_domestica	MD06G1010900.v1.1 MD11G1240500.v1.1 MD16G1285900.v1.1
prunus_persica	Prupe.5G013100_v2.0.a1 Prupe.5G013100_v2.0.a1
pyrus_communis	pycom06g00890 pycom06g00900 pycom16g25780
rosa_chinensis	RchiOBHm_Chr7g0215351
rosa_laevigata	RLG00000002668
rosa_multiflora	Rmu_co8050526.1_g000001 Rmu_sc0000765.1_g000031
rosa_roxburghii	Rroxscaffold_3G00244250
rosa_rugosa	Rorug07G0152600
rosa_samantha	Rh7AG289200 Rh7BG281100 Rh7CG309000 Rh7DG292800
rosa_wichuraiana	Rw7G024720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	588
AccIII	TCCGGA	1 cut(s)	910
AciI	CCGC	2 cut(s)	582, 586
AclWI	GGATC	2 cut(s)	342, 923
AcoI	YGGCCR	2 cut(s)	450, 1014
AcsI	RAATTY	4 cut(s)	26, 864, 1080, 1102
AcuI	CTGAAG	2 cut(s)	209, 749
AcyI	GRCGYC	1 cut(s)	570
AfaI	GTAC	4 cut(s)	326, 833, 1061, 1074
AfiI	CCNNNNNNNGG	3 cut(s)	141, 214, 898
AgsI	TTSAA	5 cut(s)	58, 203, 283, 378, 653
AjnI	CCWGG	5 cut(s)	230, 394, 425, 467, 1000
AluBI	AGCT	8 cut(s)	20, 148, 436, 484, 656, 815, 950, 1021
AluI	AGCT	8 cut(s)	20, 148, 436, 484, 656, 815, 950, 1021
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	2 cut(s)	117, 764
AlwI	GGATC	2 cut(s)	342, 923
Ama87I	CYCGRG	3 cut(s)	359, 485, 506
Aor13HI	TCCGGA	1 cut(s)	910
AoxI	GGCC	4 cut(s)	238, 450, 532, 1014
ApeKI	GCWGC	3 cut(s)	17, 20, 173
ApoI	RAATTY	4 cut(s)	26, 864, 1080, 1102
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AseI	ATTAAT	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	490
AsuC2I	CCSGG	1 cut(s)	899
AsuHPI	GGTGA	2 cut(s)	529, 881
AvaI	CYCGRG	3 cut(s)	359, 485, 506
AvaII	GGWCC	1 cut(s)	490
BalI	TGGCCA	2 cut(s)	452, 1016
BbsI	GAAGAC	3 cut(s)	201, 275, 714
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	7, 29, 185
BccI	CCATC	4 cut(s)	57, 308, 797, 1053
BceAI	ACGGC	1 cut(s)	612
BciT130I	CCWGG	5 cut(s)	232, 396, 427, 469, 1002
BcnI	CCSGG	1 cut(s)	899
BcoDI	GTCTC	2 cut(s)	117, 764
BglII	AGATCT	2 cut(s)	444, 903
BisI	GCNGC	4 cut(s)	18, 21, 174, 582
BlsI	GCNGC	4 cut(s)	19, 22, 175, 583
Bme1390I	CCNGG	6 cut(s)	232, 396, 427, 469, 899, 1002
Bme18I	GGWCC	1 cut(s)	490
BmeT110I	CYCGRG	3 cut(s)	359, 485, 506
BmgT120I	GGNCC	1 cut(s)	490
BmiI	GGNNCC	2 cut(s)	915, 989
BmrFI	CCNGG	6 cut(s)	232, 396, 427, 469, 899, 1002
BmsI	GCATC	2 cut(s)	78, 732
BpiI	GAAGAC	3 cut(s)	201, 275, 714
BplI	GAGNNNNNCTC	2 cut(s)	321, 353
BpmI	CTGGAG	1 cut(s)	1043
BpuEI	CTTGAG	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	899
BsaHI	GRCGYC	1 cut(s)	570
BsaJI	CCNNGG	4 cut(s)	118, 213, 231, 1001
BsaWI	WCCGGW	1 cut(s)	910
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 214, 898
Bse118I	RCCGGY	2 cut(s)	169, 240
BseAI	TCCGGA	1 cut(s)	910
BseBI	CCWGG	5 cut(s)	232, 396, 427, 469, 1002
BseDI	CCNNGG	4 cut(s)	118, 213, 231, 1001
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	3 cut(s)	141, 214, 898
BseMII	CTCAG	2 cut(s)	455, 909
BseXI	GCAGC	3 cut(s)	7, 29, 185
BseYI	CCCAGC	1 cut(s)	91
Bsh1236I	CGCG	1 cut(s)	588
Bsh1285I	CGRYCG	1 cut(s)	245
BshFI	GGCC	4 cut(s)	240, 452, 534, 1016
BsiEI	CGRYCG	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	36
BsiHKCI	CYCGRG	3 cut(s)	359, 485, 506
BsiSI	CCGG	6 cut(s)	14, 71, 170, 241, 899, 911
BslI	CCNNNNNNNGG	3 cut(s)	141, 214, 898
BsmAI	GTCTC	2 cut(s)	117, 764
BsnI	GGCC	4 cut(s)	240, 452, 534, 1016
BsoBI	CYCGRG	3 cut(s)	359, 485, 506
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp13I	TCCGGA	1 cut(s)	910
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	6 cut(s)	246, 334, 444, 903, 928, 1097
BspACI	CCGC	2 cut(s)	582, 586
BspANI	GGCC	4 cut(s)	240, 452, 534, 1016
BspCNI	CTCAG	2 cut(s)	454, 910
BspEI	TCCGGA	1 cut(s)	910
BspFNI	CGCG	1 cut(s)	588
BspLI	GGNNCC	2 cut(s)	915, 989
BspPI	GGATC	2 cut(s)	342, 923
BspQI	GCTCTTC	1 cut(s)	660
BsrFI	RCCGGY	2 cut(s)	169, 240
BsrGI	TGTACA	1 cut(s)	324
BssAI	RCCGGY	2 cut(s)	169, 240
BssECI	CCNNGG	4 cut(s)	118, 213, 231, 1001
BssMI	GATC	6 cut(s)	246, 334, 444, 903, 928, 1097
BssNI	GRCGYC	1 cut(s)	570
BssT1I	CCWWGG	2 cut(s)	118, 213
Bst2UI	CCWGG	5 cut(s)	232, 396, 427, 469, 1002
Bst6I	CTCTTC	3 cut(s)	410, 660, 690
BstACI	GRCGYC	1 cut(s)	570
BstAUI	TGTACA	1 cut(s)	324
BstC8I	GCNNGC	5 cut(s)	171, 438, 482, 586, 601
BstDEI	CTNAG	2 cut(s)	441, 918
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	588
BstKTI	GATC	6 cut(s)	249, 337, 447, 906, 931, 1100
BstMAI	GTCTC	2 cut(s)	117, 764
BstMBI	GATC	6 cut(s)	246, 334, 444, 903, 928, 1097
BstMCI	CGRYCG	1 cut(s)	245
BstNI	CCWGG	5 cut(s)	232, 396, 427, 469, 1002
BstNSI	RCATGY	1 cut(s)	973
BstSCI	CCNGG	6 cut(s)	230, 394, 425, 467, 897, 1000
BstUI	CGCG	1 cut(s)	588
BstV1I	GCAGC	3 cut(s)	7, 29, 185
BstV2I	GAAGAC	3 cut(s)	201, 275, 714
BstX2I	RGATCY	3 cut(s)	334, 444, 903
BstXI	CCANNNNNNTGG	1 cut(s)	858
BstYI	RGATCY	3 cut(s)	334, 444, 903
BsuRI	GGCC	4 cut(s)	240, 452, 534, 1016
BtsCI	GGATG	1 cut(s)	93
BtsI	GCAGTG	3 cut(s)	290, 773, 988
BtsIMutI	CAGTG	3 cut(s)	290, 773, 988
Cac8I	GCNNGC	5 cut(s)	171, 438, 482, 586, 601
Cfr10I	RCCGGY	2 cut(s)	169, 240
Cfr13I	GGNCC	1 cut(s)	490
CseI	GACGC	1 cut(s)	559
Csp6I	GTAC	4 cut(s)	325, 832, 1060, 1073
CspCI	CAANNNNNGTGG	2 cut(s)	922, 957
CviAII	CATG	5 cut(s)	166, 418, 517, 970, 996
CviQI	GTAC	4 cut(s)	325, 832, 1060, 1073
DdeI	CTNAG	2 cut(s)	441, 918
DpnI	GATC	6 cut(s)	248, 336, 446, 905, 930, 1099
DpnII	GATC	6 cut(s)	246, 334, 444, 903, 928, 1097
EaeI	YGGCCR	2 cut(s)	450, 1014
Eam1104I	CTCTTC	3 cut(s)	410, 660, 690
EarI	CTCTTC	3 cut(s)	410, 660, 690
Eco130I	CCWWGG	2 cut(s)	118, 213
Eco147I	AGGCCT	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	490
Eco57I	CTGAAG	2 cut(s)	209, 749
Eco88I	CYCGRG	3 cut(s)	359, 485, 506
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoRII	CCWGG	5 cut(s)	230, 394, 425, 467, 1000
EcoT14I	CCWWGG	2 cut(s)	118, 213
ErhI	CCWWGG	2 cut(s)	118, 213
FaeI	CATG	5 cut(s)	169, 421, 520, 973, 999
FatI	CATG	5 cut(s)	165, 417, 516, 969, 995
FauI	CCCGC	1 cut(s)	593
Fnu4HI	GCNGC	4 cut(s)	18, 21, 174, 582
FokI	GGATG	1 cut(s)	100
Fsp4HI	GCNGC	4 cut(s)	18, 21, 174, 582
GluI	GCNGC	4 cut(s)	18, 21, 174, 582
GsaI	CCCAGC	1 cut(s)	95
GsuI	CTGGAG	1 cut(s)	1043
HaeIII	GGCC	4 cut(s)	240, 452, 534, 1016
HapII	CCGG	6 cut(s)	14, 71, 170, 241, 899, 911
HgaI	GACGC	1 cut(s)	559
Hin1I	GRCGYC	1 cut(s)	570
Hin1II	CATG	5 cut(s)	169, 421, 520, 973, 999
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	4 cut(s)	10, 203, 218, 509
HpaII	CCGG	6 cut(s)	14, 71, 170, 241, 899, 911
HphI	GGTGA	2 cut(s)	529, 881
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	6 cut(s)	158, 444, 720, 846, 881, 1097
Hpy188III	TCNNGA	8 cut(s)	37, 340, 359, 361, 506, 650, 767, 911
Hpy8I	GTNNAC	1 cut(s)	276
Hpy99I	CGWCG	2 cut(s)	545, 598
HpyAV	CCTTC	9 cut(s)	172, 230, 233, 358, 424, 512, 523, 524, 830
HpyCH4IV	ACGT	3 cut(s)	272, 278, 561
HpyF3I	CTNAG	2 cut(s)	441, 918
HpySE526I	ACGT	3 cut(s)	272, 278, 561
Hsp92I	GRCGYC	1 cut(s)	570
Hsp92II	CATG	5 cut(s)	169, 421, 520, 973, 999
Kpn2I	TCCGGA	1 cut(s)	910
KroI	GCCGGC	1 cut(s)	169
KroNI	GCCGGC	1 cut(s)	171
Kzo9I	GATC	6 cut(s)	246, 334, 444, 903, 928, 1097
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	3 cut(s)	433, 913, 955
Lsp1109I	GCAGC	3 cut(s)	7, 29, 185
LweI	GCATC	2 cut(s)	78, 732
MaeII	ACGT	3 cut(s)	272, 278, 561
MaeIII	GTNAC	2 cut(s)	368, 658
MalI	GATC	6 cut(s)	248, 336, 446, 905, 930, 1099
MboI	GATC	6 cut(s)	246, 334, 444, 903, 928, 1097
MflI	RGATCY	3 cut(s)	334, 444, 903
MhlI	GDGCHC	1 cut(s)	36
MlsI	TGGCCA	2 cut(s)	452, 1016
MluNI	TGGCCA	2 cut(s)	452, 1016
MlyI	GAGTC	2 cut(s)	19, 518
Mox20I	TGGCCA	2 cut(s)	452, 1016
MroI	TCCGGA	1 cut(s)	910
MroNI	GCCGGC	1 cut(s)	169
MroXI	GAANNNNTTC	1 cut(s)	272
MscI	TGGCCA	2 cut(s)	452, 1016
MseI	TTAA	3 cut(s)	387, 690, 1127
Msp20I	TGGCCA	2 cut(s)	452, 1016
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	6 cut(s)	14, 71, 170, 241, 899, 911
MspR9I	CCNGG	6 cut(s)	232, 396, 427, 469, 899, 1002
MvaI	CCWGG	5 cut(s)	232, 396, 427, 469, 1002
MvnI	CGCG	1 cut(s)	588
NaeI	GCCGGC	1 cut(s)	171
NciI	CCSGG	1 cut(s)	899
NdeII	GATC	6 cut(s)	246, 334, 444, 903, 928, 1097
NgoMIV	GCCGGC	1 cut(s)	169
NlaIII	CATG	5 cut(s)	169, 421, 520, 973, 999
NlaIV	GGNNCC	2 cut(s)	915, 989
NmeAIII	GCCGAG	1 cut(s)	609
NmuCI	GTSAC	1 cut(s)	658
NspI	RCATGY	1 cut(s)	973
PaeR7I	CTCGAG	3 cut(s)	359, 485, 506
PceI	AGGCCT	1 cut(s)	534
PciSI	GCTCTTC	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	4 cut(s)	504, 558, 567, 585
PdiI	GCCGGC	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	203, 218
PflFI	GACNNNGTC	1 cut(s)	560
PfoI	TCCNGGA	1 cut(s)	394
PkrI	GCNGC	4 cut(s)	19, 22, 175, 583
PleI	GAGTC	2 cut(s)	18, 517
PpsI	GAGTC	2 cut(s)	18, 517
PshBI	ATTAAT	1 cut(s)	387
Psp6I	CCWGG	5 cut(s)	230, 394, 425, 467, 1000
PspFI	CCCAGC	1 cut(s)	91
PspGI	CCWGG	5 cut(s)	230, 394, 425, 467, 1000
PspN4I	GGNNCC	2 cut(s)	915, 989
PspPI	GGNCC	1 cut(s)	490
PspXI	VCTCGAGB	1 cut(s)	485
PsuI	RGATCY	3 cut(s)	334, 444, 903
PsyI	GACNNNGTC	1 cut(s)	560
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	4 cut(s)	326, 833, 1061, 1074
RsaNI	GTAC	4 cut(s)	325, 832, 1060, 1073
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	3 cut(s)	387, 690, 1127
SatI	GCNGC	4 cut(s)	18, 21, 174, 582
Sau3AI	GATC	6 cut(s)	246, 334, 444, 903, 928, 1097
Sau96I	GGNCC	1 cut(s)	490
SchI	GAGTC	2 cut(s)	19, 518
ScrFI	CCNGG	6 cut(s)	232, 396, 427, 469, 899, 1002
SduI	GDGCHC	1 cut(s)	36
SfaNI	GCATC	2 cut(s)	78, 732
Sfr274I	CTCGAG	3 cut(s)	359, 485, 506
SinI	GGWCC	1 cut(s)	490
SlaI	CTCGAG	3 cut(s)	359, 485, 506
SmlI	CTYRAG	4 cut(s)	338, 359, 485, 506
SmoI	CTYRAG	4 cut(s)	338, 359, 485, 506
SseBI	AGGCCT	1 cut(s)	534
SsiI	CCGC	2 cut(s)	582, 586
SspI	AATATT	1 cut(s)	391
StuI	AGGCCT	1 cut(s)	534
StyD4I	CCNGG	6 cut(s)	230, 394, 425, 467, 897, 1000
StyI	CCWWGG	2 cut(s)	118, 213
TaiI	ACGT	3 cut(s)	275, 281, 564
TaqI	TCGA	8 cut(s)	8, 192, 245, 360, 486, 507, 755, 819
TatI	WGTACW	2 cut(s)	324, 1059
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	2 cut(s)	203, 218
Tru1I	TTAA	3 cut(s)	387, 690, 1127
Tru9I	TTAA	3 cut(s)	387, 690, 1127
TscAI	CASTG	3 cut(s)	297, 780, 988
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	3 cut(s)	17, 20, 173
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	6 cut(s)	154, 281, 434, 505, 635, 1023
TspGWI	ACGGA	1 cut(s)	677
TspRI	CASTG	3 cut(s)	297, 780, 988
Tth111I	GACNNNGTC	1 cut(s)	560
VpaK11BI	GGWCC	1 cut(s)	490
VspI	ATTAAT	1 cut(s)	387
XagI	CCTNNNNNAGG	1 cut(s)	212
XapI	RAATTY	4 cut(s)	26, 864, 1080, 1102
XceI	RCATGY	1 cut(s)	973
XcmI	CCANNNNNNNNNTGG	2 cut(s)	433, 998
XhoI	CTCGAG	3 cut(s)	359, 485, 506
XmnI	GAANNNNTTC	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.