Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005727

Physical Location & Seq

Genomic Coordinates Reverse (-)

12116610 .. 12116837

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0152600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGACCAGGAAATTGAAGCTTTGGATGGGGCTTTATTGCCTACCAAAGTTGCTGATGAGTTCAGGCCTTTCGTTCGCCGTCTCTCGGAGTTCAAGTTCTGGTATTCCATCACCAAGGCTTTCATTATTGCATTTATCATGACCTTTATCTTTGTGTTGGATGTGCCTGTTTTTTGGCCAATATTGAAATGCTACTGGATTATGCTATTTGTCCTCACAATGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0006066 GO:0006082 GO:0006629 GO:0006694 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009639 GO:0009687 GO:0009987 GO:0010035 GO:0010268 GO:0010295 GO:0010817 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042592 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046164 GO:0046345 GO:0046395 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901617 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

75

Amino Acids

9.0

Weight (kDa)

6.12

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rer1	PF03248	6 - 75	3.6e-30	Rer1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19230 AT4G19230 AT5G45340 AT5G45340
fragaria_vesca	FvH4_5g25150 FvH4_5g25150 FvH4_5g25150 FvH4_5g25150 FvH4_5g25150
malus_domestica	MD06G1010900.v1.1 MD11G1240500.v1.1 MD16G1285900.v1.1
prunus_persica	Prupe.5G013100_v2.0.a1 Prupe.5G013100_v2.0.a1
pyrus_communis	pycom06g00890 pycom06g00900 pycom16g25780
rosa_chinensis	RchiOBHm_Chr7g0215351
rosa_laevigata	RLG00000002668
rosa_multiflora	Rmu_co8050526.1_g000001 Rmu_sc0000765.1_g000031
rosa_roxburghii	Rroxscaffold_3G00244250
rosa_rugosa	Rorug07G0152600
rosa_samantha	Rh7AG289200 Rh7BG281100 Rh7CG309000 Rh7DG292800
rosa_wichuraiana	Rw7G024720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	3 cut(s)	17, 94, 187
AjnI	CCWGG	1 cut(s)	6
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw26I	GTCTC	1 cut(s)	86
AoxI	GGCC	2 cut(s)	65, 176
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	178
BccI	CCATC	2 cut(s)	20, 116
BceAI	ACGGC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	8
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	2 cut(s)	31, 166
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	200
BshFI	GGCC	2 cut(s)	67, 178
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	86
BsmBI	CGTCTC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	67, 178
BspANI	GGCC	2 cut(s)	67, 178
BspHI	TCATGA	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	8
BstF5I	GGATG	2 cut(s)	31, 166
BstMAI	GTCTC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	67, 178
BtsCI	GGATG	2 cut(s)	31, 166
CciI	TCATGA	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	5 cut(s)	20, 32, 67, 119, 178
CviKI_1	RGCY	5 cut(s)	20, 32, 67, 119, 178
EaeI	YGGCCR	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	114
Eco147I	AGGCCT	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	1 cut(s)	142
FaiI	YATR	2 cut(s)	140, 203
FatI	CATG	1 cut(s)	138
FokI	GGATG	2 cut(s)	38, 173
HaeIII	GGCC	2 cut(s)	67, 178
Hin1II	CATG	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	18
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	139
HpyCH4V	TGCA	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	142
LpnPI	CCDG	5 cut(s)	20, 49, 85, 180, 181
MlsI	TGGCCA	1 cut(s)	178
MluCI	AATT	1 cut(s)	12
MluNI	TGGCCA	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	1 cut(s)	224
Mox20I	TGGCCA	1 cut(s)	178
MscI	TGGCCA	1 cut(s)	178
Msp20I	TGGCCA	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
NlaIII	CATG	1 cut(s)	142
PagI	TCATGA	1 cut(s)	138
PceI	AGGCCT	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	8
SetI	ASST	2 cut(s)	22, 146
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	1 cut(s)	12
SseBI	AGGCCT	1 cut(s)	67
SspI	AATATT	1 cut(s)	183
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	114
TasI	AATT	1 cut(s)	12
TspDTI	ATGAA	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.