AT4G20260

ATPCAP1, PCAP1 DREPP plasma membrane polypeptide family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003896
Physical Location & Seq
Forward (+)
10940414 .. 10943561
3148 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G20260.3

Sequence Viewer

Length: 678 bp
ATGGGTTACTGGAATTCCAAGGTTGTTCCAAAATTCAAGAAGTTATTCGAGAAAAATAGTGCTAAGAAGGCTGCTGCTGCTGAAGCTACCAAGACCTTTGATGAATCTAAGGAAACAATCAACAAGGAAATTGAGGAGAAAAAGACAGAACTCCAACCAAAGGTCGTGGAAACCTATGAAGCCACGTCTGCAGAAGTCAAGGCTTTGGTGAGAGACCCTAAGGTGGCTGGTTTGAAGAAAAACTCAGCGGCTGTGCAGAAGTACCTCGAGGAGCTAGTCAAAATTGAATTCCCCGGATCAAAAGCGGTGAGTGAGGCTTCGTCTAGCTTCGGAGCTGGCTATGTCGCAGGACCGGTCACGTTCATATTCGAGAAGGTATCTGTTTTCCTCCCGGAGGAGGTGAAGACTAAAGAAATACCGGTGGAGGAAGTGAAAGCTGAAGAACCTGCCAAAACTGAAGAACCAGCCAAAACCGAAGGAACAAGTGGTGAGAAAGAGGAGATTGTTGAAGAGACAAAGAAAGGCGAGACCCCTGAAACCGCGGTCGTGGAGGAGAAGAAACCAGAGGTAGAGGAGAAGAAGGAAGAGGCTACTCCGGCTCCGGCAGTGGTTGAAACTCCAGTTAAGGAACCGGAGACAACGACGACAGCGCCAGTGGCTGAACCACCAAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0001101 GO:0001558 GO:0002237 GO:0003674 GO:0005488 GO:0005507 GO:0005509 GO:0005515 GO:0005516 GO:0005543 GO:0005546 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005911 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010118 GO:0010350 GO:0010555 GO:0010638 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016032 GO:0016043 GO:0018377 GO:0019058 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0030308 GO:0030865 GO:0031110 GO:0031111 GO:0031112 GO:0031113 GO:0031114 GO:0031115 GO:0031117 GO:0031122 GO:0031224 GO:0031225 GO:0031226 GO:0031333 GO:0031365 GO:0031667 GO:0031668 GO:0031669 GO:0032026 GO:0032271 GO:0032272 GO:0032886 GO:0033043 GO:0033554 GO:0034645 GO:0035091 GO:0035864 GO:0035865 GO:0036211 GO:0040008 GO:0042157 GO:0042158 GO:0042221 GO:0042594 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043243 GO:0043244 GO:0043254 GO:0043325 GO:0043412 GO:0043543 GO:0043622 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044766 GO:0045926 GO:0046658 GO:0046688 GO:0046794 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051494 GO:0051495 GO:0051510 GO:0051511 GO:0051592 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070507 GO:0070887 GO:0071214 GO:0071216 GO:0071219 GO:0071241 GO:0071248 GO:0071280 GO:0071281 GO:0071286 GO:0071310 GO:0071322 GO:0071325 GO:0071470 GO:0071472 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072708 GO:0072709 GO:0075733 GO:0080025 GO:0090332 GO:0097435 GO:0098542 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0104004 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1901879 GO:1901881 GO:1901981 GO:1902579 GO:1902903 GO:1902904 GO:1902905 GO:1902936
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DREPP

Protein Analysis

225

Amino Acids

24.58

Weight (kDa)

4.99

Isoelectric Point (pI)

53.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DREPP PF05558 1 - 225 3.9e-88 DREPP plasma membrane polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 266
Acc36I ACCTGC 1 cut(s) 454
AccII CGCG 1 cut(s) 542
AciI CCGC 4 cut(s) 248, 305, 540, 542
AclWI GGATC 1 cut(s) 304
AcsI RAATTY 3 cut(s) 13, 32, 287
AcuI CTGAAG 3 cut(s) 102, 459, 477
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 4 cut(s) 160, 223, 394, 397
AgeI ACCGGT 2 cut(s) 352, 418
AgsI TTSAA 5 cut(s) 37, 235, 287, 509, 614
AjiI CACGTC 1 cut(s) 186
AluBI AGCT 5 cut(s) 86, 274, 327, 335, 437
AluI AGCT 5 cut(s) 86, 274, 327, 335, 437
Alw26I GTCTC 4 cut(s) 207, 506, 521, 629
AlwI GGATC 1 cut(s) 304
AlwNI CAGNNNCTG 2 cut(s) 251, 659
Ama87I CYCGRG 1 cut(s) 266
ApeKI GCWGC 3 cut(s) 71, 74, 77
ApoI RAATTY 3 cut(s) 13, 32, 287
AsiGI ACCGGT 2 cut(s) 352, 418
Asp700I GAANNNNTTC 1 cut(s) 44
AspLEI GCGC 1 cut(s) 652
AspS9I GGNCC 1 cut(s) 350
AsuC2I CCSGG 2 cut(s) 294, 392
AsuHPI GGTGA 4 cut(s) 220, 319, 412, 500
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 1 cut(s) 350
AxyI CCTNAGG 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 410
BbvI GCAGC 3 cut(s) 58, 61, 64
BcnI CCSGG 2 cut(s) 294, 392
BcoDI GTCTC 4 cut(s) 207, 506, 521, 629
BfaI CTAG 2 cut(s) 275, 324
BfmI CTRYAG 1 cut(s) 189
BfoI RGCGCY 1 cut(s) 653
BfuAI ACCTGC 1 cut(s) 454
BisI GCNGC 4 cut(s) 72, 75, 78, 249
BlsI GCNGC 4 cut(s) 73, 76, 79, 250
Bme1390I CCNGG 2 cut(s) 294, 392
Bme18I GGWCC 1 cut(s) 350
BmeT110I CYCGRG 1 cut(s) 266
BmgBI CACGTC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 2 cut(s) 600, 630
BmrFI CCNGG 2 cut(s) 294, 392
BpiI GAAGAC 1 cut(s) 410
BpmI CTGGAG 1 cut(s) 603
BpuMI CCSGG 2 cut(s) 294, 392
BsaI GGTCTC 2 cut(s) 207, 521
BsaJI CCNNGG 3 cut(s) 18, 292, 540
BsaWI WCCGGW 3 cut(s) 352, 418, 631
BsaXI ACNNNNNCTCC 2 cut(s) 583, 613
Bsc4I CCNNNNNNNGG 4 cut(s) 160, 223, 394, 397
Bse118I RCCGGY 2 cut(s) 352, 418
Bse1I ACTGG 3 cut(s) 14, 620, 653
Bse21I CCTNAGG 1 cut(s) 219
BseDI CCNNGG 3 cut(s) 18, 292, 540
BseLI CCNNNNNNNGG 4 cut(s) 160, 223, 394, 397
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 3 cut(s) 14, 620, 653
BseRI GAGGAG 6 cut(s) 149, 284, 410, 512, 566, 587
BseXI GCAGC 3 cut(s) 58, 61, 64
BsgI GTGCAG 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 542
Bsh1285I CGRYCG 1 cut(s) 546
BshTI ACCGGT 2 cut(s) 352, 418
BsiEI CGRYCG 1 cut(s) 546
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 7 cut(s) 294, 353, 392, 419, 596, 602, 632
BslI CCNNNNNNNGG 4 cut(s) 160, 223, 394, 397
BsmAI GTCTC 4 cut(s) 207, 506, 521, 629
Bso31I GGTCTC 2 cut(s) 207, 521
BsoBI CYCGRG 1 cut(s) 266
Bsp143I GATC 1 cut(s) 296
BspACI CCGC 4 cut(s) 248, 305, 540, 542
BspCNI CTCAG 1 cut(s) 257
BspFNI CGCG 1 cut(s) 542
BspLI GGNNCC 2 cut(s) 600, 630
BspMAI CTGCAG 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 454
BspPI GGATC 1 cut(s) 304
BspTNI GGTCTC 2 cut(s) 207, 521
BsrFI RCCGGY 2 cut(s) 352, 418
BsrI ACTGG 3 cut(s) 14, 620, 653
BssAI RCCGGY 2 cut(s) 352, 418
BssECI CCNNGG 3 cut(s) 18, 292, 540
BssMI GATC 1 cut(s) 296
BssT1I CCWWGG 1 cut(s) 18
Bst6I CTCTTC 2 cut(s) 504, 579
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 4 cut(s) 63, 108, 219, 244
BstDSI CCRYGG 1 cut(s) 540
BstENI CCTNNNNNAGG 1 cut(s) 392
BstFNI CGCG 1 cut(s) 542
BstH2I RGCGCY 1 cut(s) 653
BstHHI GCGC 1 cut(s) 652
BstKTI GATC 1 cut(s) 299
BstMAI GTCTC 4 cut(s) 207, 506, 521, 629
BstMBI GATC 1 cut(s) 296
BstMCI CGRYCG 1 cut(s) 546
BstMWI GCNNNNNNNGC 6 cut(s) 68, 77, 83, 188, 596, 656
BstSCI CCNGG 2 cut(s) 292, 390
BstSFI CTRYAG 1 cut(s) 189
BstUI CGCG 1 cut(s) 542
BstV1I GCAGC 3 cut(s) 58, 61, 64
BstV2I GAAGAC 1 cut(s) 410
Bsu36I CCTNAGG 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 540
BtrI CACGTC 1 cut(s) 186
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 2 cut(s) 612, 660
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 1 cut(s) 337
CaiI CAGNNNCTG 2 cut(s) 251, 659
CfoI GCGC 1 cut(s) 652
Cfr10I RCCGGY 2 cut(s) 352, 418
Cfr13I GGNCC 1 cut(s) 350
Cfr42I CCGCGG 1 cut(s) 543
Csp6I GTAC 1 cut(s) 262
CspAI ACCGGT 2 cut(s) 352, 418
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 4 cut(s) 63, 108, 219, 244
DpnI GATC 1 cut(s) 298
DpnII GATC 1 cut(s) 296
Eam1104I CTCTTC 2 cut(s) 504, 579
EarI CTCTTC 2 cut(s) 504, 579
Eco130I CCWWGG 1 cut(s) 18
Eco31I GGTCTC 2 cut(s) 207, 521
Eco47I GGWCC 1 cut(s) 350
Eco57I CTGAAG 3 cut(s) 102, 459, 477
Eco81I CCTNAGG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 266
EcoNI CCTNNNNNAGG 1 cut(s) 392
EcoRI GAATTC 2 cut(s) 13, 287
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaiI YATR 3 cut(s) 177, 342, 365
Fnu4HI GCNGC 4 cut(s) 72, 75, 78, 249
Fsp4HI GCNGC 4 cut(s) 72, 75, 78, 249
FspBI CTAG 2 cut(s) 275, 324
GlaI GCGC 1 cut(s) 651
GluI GCNGC 4 cut(s) 72, 75, 78, 249
GsuI CTGGAG 1 cut(s) 603
HaeII RGCGCY 1 cut(s) 653
HapII CCGG 7 cut(s) 294, 353, 392, 419, 596, 602, 632
HhaI GCGC 1 cut(s) 652
Hin6I GCGC 1 cut(s) 650
HinP1I GCGC 1 cut(s) 650
HinfI GANTC 1 cut(s) 104
HpaII CCGG 7 cut(s) 294, 353, 392, 419, 596, 602, 632
HphI GGTGA 4 cut(s) 220, 319, 412, 500
Hpy188I TCNGA 1 cut(s) 332
Hpy188III TCNNGA 3 cut(s) 37, 49, 370
Hpy99I CGWCG 1 cut(s) 646
HpyAV CCTTC 4 cut(s) 61, 367, 470, 574
HpyCH4IV ACGT 2 cut(s) 185, 359
HpyCH4V TGCA 2 cut(s) 191, 256
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 77, 83, 188, 596, 656
HpyF3I CTNAG 4 cut(s) 63, 108, 219, 244
HpySE526I ACGT 2 cut(s) 185, 359
HspAI GCGC 1 cut(s) 650
KspI CCGCGG 1 cut(s) 543
Kzo9I GATC 1 cut(s) 296
LmnI GCTCC 3 cut(s) 271, 332, 604
Lsp1109I GCAGC 3 cut(s) 58, 61, 64
MaeI CTAG 2 cut(s) 275, 324
MaeII ACGT 2 cut(s) 185, 359
MaeIII GTNAC 2 cut(s) 5, 355
MalI GATC 1 cut(s) 298
MboI GATC 1 cut(s) 296
MboII GAAGA 8 cut(s) 247, 415, 452, 470, 521, 568, 589, 596
MluCI AATT 5 cut(s) 13, 32, 129, 282, 287
MmeI TCCRAC 1 cut(s) 178
MroXI GAANNNNTTC 1 cut(s) 44
MseI TTAA 1 cut(s) 624
MspA1I CMGCKG 2 cut(s) 248, 542
MspI CCGG 7 cut(s) 294, 353, 392, 419, 596, 602, 632
MspR9I CCNGG 2 cut(s) 294, 392
MvnI CGCG 1 cut(s) 542
MwoI GCNNNNNNNGC 6 cut(s) 68, 77, 83, 188, 596, 656
NciI CCSGG 2 cut(s) 294, 392
NdeII GATC 1 cut(s) 296
NlaIV GGNNCC 2 cut(s) 600, 630
NmuCI GTSAC 1 cut(s) 355
PaeR7I CTCGAG 1 cut(s) 266
PdmI GAANNNNTTC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 104
PfoI TCCNGGA 1 cut(s) 390
PinAI ACCGGT 2 cut(s) 352, 418
PkrI GCNGC 4 cut(s) 73, 76, 79, 250
PspN4I GGNNCC 2 cut(s) 600, 630
PspPI GGNCC 1 cut(s) 350
PspXI VCTCGAGB 1 cut(s) 266
PstI CTGCAG 1 cut(s) 193
PstNI CAGNNNCTG 2 cut(s) 251, 659
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SacII CCGCGG 1 cut(s) 543
SaqAI TTAA 1 cut(s) 624
SatI GCNGC 4 cut(s) 72, 75, 78, 249
Sau3AI GATC 1 cut(s) 296
Sau96I GGNCC 1 cut(s) 350
ScrFI CCNGG 2 cut(s) 294, 392
SfcI CTRYAG 1 cut(s) 189
Sfr274I CTCGAG 1 cut(s) 266
Sfr303I CCGCGG 1 cut(s) 543
SgrBI CCGCGG 1 cut(s) 543
SinI GGWCC 1 cut(s) 350
SlaI CTCGAG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 5 cut(s) 13, 32, 129, 282, 287
SsiI CCGC 4 cut(s) 248, 305, 540, 542
SspMI CTAG 2 cut(s) 275, 324
StyD4I CCNGG 2 cut(s) 292, 390
StyI CCWWGG 1 cut(s) 18
TaiI ACGT 2 cut(s) 188, 362
TaqI TCGA 3 cut(s) 48, 267, 369
TasI AATT 5 cut(s) 13, 32, 129, 282, 287
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 624
Tru9I TTAA 1 cut(s) 624
TscAI CASTG 2 cut(s) 612, 660
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 3 cut(s) 71, 74, 77
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 3 cut(s) 117, 192, 352
TspRI CASTG 2 cut(s) 612, 660
VpaK11BI GGWCC 1 cut(s) 350
XagI CCTNNNNNAGG 1 cut(s) 392
XapI RAATTY 3 cut(s) 13, 32, 287
XhoI CTCGAG 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 44
XspI CTAG 2 cut(s) 275, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.