Rmu_co8288877.1_g000001

DREPP plasma membrane polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8288877.1
OG0003896
Physical Location & Seq
Forward (+)
1 .. 866
866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8288877.1_g000001.1.cds

Sequence Viewer

Length: 446 bp
gggtatttgagtttgagaagaattcaaagatgggttactggaaaacaaaggtgcttcccacaatcaagaaggtgtttgagaacaagggcagtatcaaaaaggctgaagctgctgaagcttgcaagacctttgatgagtcgaaggagagttatgccaaggagtttgaagagaagaaggccgagtatcaagtaaaagtagttgaattatatgaagcttcctctgctgaaatcaagactttgattaaggagcggaagctggctgggttgaagaagtactctgctgcggtccacaagttccttgaagagcttgccaagatagactttccaggatcgaaaccagtctcagaagcatcatcaaagtatggacctgcctacgtctcaggtccagtcttctttgtgtttgagaaggtctcaacgtatattgtgacagaagagaaggtagcggag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0001101 GO:0001558 GO:0002237 GO:0003674 GO:0005488 GO:0005507 GO:0005509 GO:0005515 GO:0005516 GO:0005543 GO:0005546 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005911 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010118 GO:0010350 GO:0010555 GO:0010638 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016032 GO:0016043 GO:0018377 GO:0019058 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0030308 GO:0030865 GO:0031110 GO:0031111 GO:0031112 GO:0031113 GO:0031114 GO:0031115 GO:0031117 GO:0031122 GO:0031224 GO:0031225 GO:0031226 GO:0031333 GO:0031365 GO:0031667 GO:0031668 GO:0031669 GO:0032026 GO:0032271 GO:0032272 GO:0032886 GO:0033043 GO:0033554 GO:0034645 GO:0035091 GO:0035864 GO:0035865 GO:0036211 GO:0040008 GO:0042157 GO:0042158 GO:0042221 GO:0042594 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043243 GO:0043244 GO:0043254 GO:0043325 GO:0043412 GO:0043543 GO:0043622 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044766 GO:0045926 GO:0046658 GO:0046688 GO:0046794 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051494 GO:0051495 GO:0051510 GO:0051511 GO:0051592 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070507 GO:0070887 GO:0071214 GO:0071216 GO:0071219 GO:0071241 GO:0071248 GO:0071280 GO:0071281 GO:0071286 GO:0071310 GO:0071322 GO:0071325 GO:0071470 GO:0071472 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072708 GO:0072709 GO:0075733 GO:0080025 GO:0090332 GO:0097435 GO:0098542 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0104004 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1901879 GO:1901881 GO:1901981 GO:1902579 GO:1902903 GO:1902904 GO:1902905 GO:1902936
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DREPP

Protein Analysis

148

Amino Acids

16.76

Weight (kDa)

8.72

Isoelectric Point (pI)

31.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 375
AccBSI CCGCTC 1 cut(s) 249
AciI CCGC 3 cut(s) 249, 283, 442
AclWI GGATC 1 cut(s) 336
AcsI RAATTY 1 cut(s) 21
AcuI CTGAAG 2 cut(s) 125, 134
AfaI GTAC 1 cut(s) 274
AgsI TTSAA 5 cut(s) 26, 166, 202, 267, 301
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 5 cut(s) 109, 118, 214, 255, 306
AluI AGCT 5 cut(s) 109, 118, 214, 255, 306
Alw26I GTCTC 3 cut(s) 345, 381, 414
AlwI GGATC 1 cut(s) 336
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 2 cut(s) 109, 280
ApoI RAATTY 1 cut(s) 21
AspS9I GGNCC 3 cut(s) 285, 364, 382
AvaII GGWCC 3 cut(s) 285, 364, 382
BbsI GAAGAC 1 cut(s) 381
BbvI GCAGC 2 cut(s) 96, 267
BccI CCATC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 326
BcoDI GTCTC 3 cut(s) 345, 381, 414
BfuAI ACCTGC 1 cut(s) 375
BisI GCNGC 2 cut(s) 110, 281
BlsI GCNGC 2 cut(s) 111, 282
BmcAI AGTACT 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 326
Bme18I GGWCC 3 cut(s) 285, 364, 382
BmgT120I GGNCC 3 cut(s) 285, 364, 382
BmrFI CCNGG 1 cut(s) 326
BmsI GCATC 1 cut(s) 358
BpiI GAAGAC 1 cut(s) 381
BplI GAGNNNNNCTC 2 cut(s) 394, 426
BsaI GGTCTC 1 cut(s) 414
BsaJI CCNNGG 1 cut(s) 155
Bse1I ACTGG 3 cut(s) 43, 337, 385
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 1 cut(s) 155
BseMII CTCAG 2 cut(s) 356, 392
BseNI ACTGG 3 cut(s) 43, 337, 385
BseXI GCAGC 2 cut(s) 96, 267
BseYI CCCAGC 1 cut(s) 259
BshFI GGCC 1 cut(s) 178
BsmAI GTCTC 3 cut(s) 345, 381, 414
BsmBI CGTCTC 1 cut(s) 381
BsnI GGCC 1 cut(s) 178
Bso31I GGTCTC 1 cut(s) 414
Bsp143I GATC 1 cut(s) 328
BspACI CCGC 3 cut(s) 249, 283, 442
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 2 cut(s) 355, 391
BspMI ACCTGC 1 cut(s) 375
BspPI GGATC 1 cut(s) 336
BspQI GCTCTTC 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 414
BsrBI CCGCTC 1 cut(s) 249
BsrI ACTGG 3 cut(s) 43, 337, 385
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 1 cut(s) 328
BssT1I CCWWGG 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 326
Bst6I CTCTTC 3 cut(s) 161, 296, 425
BstC8I GCNNGC 3 cut(s) 120, 257, 308
BstDEI CTNAG 2 cut(s) 342, 378
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 3 cut(s) 345, 381, 414
BstMBI GATC 1 cut(s) 328
BstMWI GCNNNNNNNGC 3 cut(s) 109, 115, 220
BstNI CCWGG 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 324
BstV1I GCAGC 2 cut(s) 96, 267
BstV2I GAAGAC 1 cut(s) 381
BsuRI GGCC 1 cut(s) 178
BveI ACCTGC 1 cut(s) 375
Cac8I GCNNGC 3 cut(s) 120, 257, 308
Cfr13I GGNCC 3 cut(s) 285, 364, 382
Csp6I GTAC 1 cut(s) 273
CviJI RGCY 8 cut(s) 103, 109, 118, 178, 214, 255, 259, 306
CviKI_1 RGCY 8 cut(s) 103, 109, 118, 178, 214, 255, 259, 306
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 2 cut(s) 342, 378
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
Eam1104I CTCTTC 3 cut(s) 161, 296, 425
EarI CTCTTC 3 cut(s) 161, 296, 425
Eco130I CCWWGG 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 414
Eco47I GGWCC 3 cut(s) 285, 364, 382
Eco57I CTGAAG 2 cut(s) 125, 134
EcoRI GAATTC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 155
Esp3I CGTCTC 1 cut(s) 381
FaiI YATR 5 cut(s) 152, 207, 209, 362, 419
FalI AAGNNNNNCTT 2 cut(s) 304, 336
Fnu4HI GCNGC 2 cut(s) 110, 281
Fsp4HI GCNGC 2 cut(s) 110, 281
GluI GCNGC 2 cut(s) 110, 281
GsaI CCCAGC 1 cut(s) 263
HaeIII GGCC 1 cut(s) 178
HindIII AAGCTT 2 cut(s) 116, 212
HinfI GANTC 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 2 cut(s) 66, 231
Hpy8I GTNNAC 1 cut(s) 288
HpyAV CCTTC 5 cut(s) 63, 135, 168, 399, 429
HpyCH4IV ACGT 2 cut(s) 374, 415
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 115, 220
HpyF3I CTNAG 2 cut(s) 342, 378
HpySE526I ACGT 2 cut(s) 374, 415
Kzo9I GATC 1 cut(s) 328
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 1 cut(s) 246
LpnPI CCDG 9 cut(s) 24, 241, 245, 311, 338, 350, 365, 380, 398
Lsp1109I GCAGC 2 cut(s) 96, 267
LweI GCATC 1 cut(s) 358
MaeII ACGT 2 cut(s) 374, 415
MaeIII GTNAC 2 cut(s) 34, 423
MalI GATC 1 cut(s) 330
MbiI CCGCTC 1 cut(s) 249
MboI GATC 1 cut(s) 328
MboII GAAGA 7 cut(s) 30, 178, 183, 279, 313, 381, 442
MluCI AATT 2 cut(s) 21, 202
MlyI GAGTC 1 cut(s) 145
MnlI CCTC 1 cut(s) 228
MseI TTAA 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 326
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 3 cut(s) 109, 115, 220
NdeII GATC 1 cut(s) 328
NmeAIII GCCGAG 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 423
PciSI GCTCTTC 1 cut(s) 296
PfoI TCCNGGA 1 cut(s) 324
PkrI GCNGC 2 cut(s) 111, 282
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 1 cut(s) 324
PspPI GGNCC 3 cut(s) 285, 364, 382
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 2 cut(s) 110, 281
Sau3AI GATC 1 cut(s) 328
Sau96I GGNCC 3 cut(s) 285, 364, 382
ScaI AGTACT 1 cut(s) 274
SchI GAGTC 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 326
SfaNI GCATC 1 cut(s) 358
SinI GGWCC 3 cut(s) 285, 364, 382
Sse9I AATT 2 cut(s) 21, 202
SsiI CCGC 3 cut(s) 249, 283, 442
StyD4I CCNGG 1 cut(s) 324
StyI CCWWGG 1 cut(s) 155
TaiI ACGT 2 cut(s) 377, 418
TaqI TCGA 2 cut(s) 139, 331
TasI AATT 2 cut(s) 21, 202
TatI WGTACW 1 cut(s) 272
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TseFI GTSAC 1 cut(s) 423
TseI GCWGC 2 cut(s) 109, 280
Tsp45I GTSAC 1 cut(s) 423
TspDTI ATGAA 1 cut(s) 224
VpaK11BI GGWCC 3 cut(s) 285, 364, 382
XapI RAATTY 1 cut(s) 21
ZrmI AGTACT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.