Rroxscaffold_1G00056850

DREPP plasma membrane polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003896
Physical Location & Seq
Reverse (-)
78778488 .. 78779948
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00056850.1

Sequence Viewer

Length: 696 bp
ATGAGGACAGTAAGGTCCTTTTGGGTATTTGAGTTTGAGAAGAATTCAAAGATGGGTTACTGGAAAACAAAGGTGCTTCCCACAATCAAGAAGGTGTTTGAGAACAAGGGCAGTATCAAAAAGGCTGAAGCTGCTGAAGCTTGCAAGACCTTTGATGAGTCGAAGGAGAGTTATGCCAAGGAGTTTGAAGAGAAGAAGGCTGAGTATCAAGTAAAAGTAGTTGAATTATATGAAGCTTCCTCTGCTGAAATCAAGACTTTGATTAAGGAGCGGAAGCTGGCTGCGTTGAAGAAGTACTCTGCTGCAGTCCACAAGTTCCTTGAAGAGCTTGCCAAGATAGAATTTCCAGGATCGAAACCAGTCTCAGAAGCATCATCAAAGTATGGACCGGCCTACGTCTCAGGTCCAGTCTTCTTTGTGTTTGAGAAGGTCTCAACGTATATTGTGACAGAAGAGAAGGTAGCGGAGCCAACGCCACCAGAACCAACACCAGCTAAAGCTGAAGAGGAAACAAGTTCCGGAAAAGAAAAGGAGATAGTGATCGAAGAAGAGAAAAAGGAAGAGGTTGTAGAGGTGAAGAAAGAAGAAGAGGTGGTGGAGGTGGAGGAGAAGAAGGAAGAGCCTGAAGCATCATGTGCTGAGGAAAAGCCTAAGGTGGAAGAAGCTGCTCCTGCTGCTGAACCTGCAAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0001101 GO:0001558 GO:0002237 GO:0003674 GO:0005488 GO:0005507 GO:0005509 GO:0005515 GO:0005516 GO:0005543 GO:0005546 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005911 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010118 GO:0010350 GO:0010555 GO:0010638 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016032 GO:0016043 GO:0018377 GO:0019058 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0030308 GO:0030865 GO:0031110 GO:0031111 GO:0031112 GO:0031113 GO:0031114 GO:0031115 GO:0031117 GO:0031122 GO:0031224 GO:0031225 GO:0031226 GO:0031333 GO:0031365 GO:0031667 GO:0031668 GO:0031669 GO:0032026 GO:0032271 GO:0032272 GO:0032886 GO:0033043 GO:0033554 GO:0034645 GO:0035091 GO:0035864 GO:0035865 GO:0036211 GO:0040008 GO:0042157 GO:0042158 GO:0042221 GO:0042594 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043243 GO:0043244 GO:0043254 GO:0043325 GO:0043412 GO:0043543 GO:0043622 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044766 GO:0045926 GO:0046658 GO:0046688 GO:0046794 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051494 GO:0051495 GO:0051510 GO:0051511 GO:0051592 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070507 GO:0070887 GO:0071214 GO:0071216 GO:0071219 GO:0071241 GO:0071248 GO:0071280 GO:0071281 GO:0071286 GO:0071310 GO:0071322 GO:0071325 GO:0071470 GO:0071472 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072708 GO:0072709 GO:0075733 GO:0080025 GO:0090332 GO:0097435 GO:0098542 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0104004 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1901879 GO:1901881 GO:1901981 GO:1902579 GO:1902903 GO:1902904 GO:1902905 GO:1902936
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DREPP

Protein Analysis

231

Amino Acids

26.1

Weight (kDa)

5.16

Isoelectric Point (pI)

54.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DREPP PF05558 18 - 225 6.1e-75 DREPP plasma membrane polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
Acc36I ACCTGC 1 cut(s) 691
AccBSI CCGCTC 1 cut(s) 271
AccIII TCCGGA 1 cut(s) 518
AciI CCGC 2 cut(s) 271, 464
AclWI GGATC 1 cut(s) 358
AcsI RAATTY 2 cut(s) 43, 341
AcuI CTGAAG 4 cut(s) 147, 156, 522, 645
AfaI GTAC 1 cut(s) 296
AgsI TTSAA 5 cut(s) 48, 188, 224, 289, 323
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 8 cut(s) 131, 140, 236, 277, 328, 494, 500, 665
AluI AGCT 8 cut(s) 131, 140, 236, 277, 328, 494, 500, 665
Alw26I GTCTC 3 cut(s) 367, 403, 436
AlwI GGATC 1 cut(s) 358
Aor13HI TCCGGA 1 cut(s) 518
AoxI GGCC 1 cut(s) 390
ApeKI GCWGC 5 cut(s) 131, 281, 302, 665, 674
ApoI RAATTY 2 cut(s) 43, 341
AspS9I GGNCC 3 cut(s) 15, 386, 404
AsuHPI GGTGA 1 cut(s) 586
AvaII GGWCC 3 cut(s) 15, 386, 404
AxyI CCTNAGG 1 cut(s) 651
BbsI GAAGAC 1 cut(s) 403
BbvCI CCTCAGC 1 cut(s) 639
BbvI GCAGC 5 cut(s) 118, 268, 289, 652, 661
BccI CCATC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 348
BcoDI GTCTC 3 cut(s) 367, 403, 436
BfmI CTRYAG 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 691
BisI GCNGC 5 cut(s) 132, 282, 303, 666, 675
BlsI GCNGC 5 cut(s) 133, 283, 304, 667, 676
BmcAI AGTACT 1 cut(s) 296
Bme1390I CCNGG 1 cut(s) 348
Bme18I GGWCC 3 cut(s) 15, 386, 404
BmgT120I GGNCC 3 cut(s) 15, 386, 404
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 2 cut(s) 380, 638
BpiI GAAGAC 1 cut(s) 403
BplI GAGNNNNNCTC 2 cut(s) 416, 448
Bpu10I CCTNAGC 1 cut(s) 639
BsaBI GATNNNNATC 1 cut(s) 539
BsaI GGTCTC 1 cut(s) 436
BsaJI CCNNGG 1 cut(s) 177
BsaWI WCCGGW 1 cut(s) 518
Bse118I RCCGGY 1 cut(s) 388
Bse1I ACTGG 3 cut(s) 65, 359, 407
Bse21I CCTNAGG 1 cut(s) 651
Bse8I GATNNNNATC 1 cut(s) 539
BseAI TCCGGA 1 cut(s) 518
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 177
BseJI GATNNNNATC 1 cut(s) 539
BseMII CTCAG 4 cut(s) 192, 378, 414, 630
BseNI ACTGG 3 cut(s) 65, 359, 407
BseRI GAGGAG 1 cut(s) 620
BseXI GCAGC 5 cut(s) 118, 268, 289, 652, 661
BshFI GGCC 1 cut(s) 392
BsiSI CCGG 2 cut(s) 389, 519
BsmAI GTCTC 3 cut(s) 367, 403, 436
BsmBI CGTCTC 1 cut(s) 403
BsnI GGCC 1 cut(s) 392
Bso31I GGTCTC 1 cut(s) 436
Bsp13I TCCGGA 1 cut(s) 518
Bsp143I GATC 2 cut(s) 350, 540
BspACI CCGC 2 cut(s) 271, 464
BspANI GGCC 1 cut(s) 392
BspCNI CTCAG 4 cut(s) 193, 377, 413, 631
BspEI TCCGGA 1 cut(s) 518
BspLI GGNNCC 1 cut(s) 468
BspMAI CTGCAG 1 cut(s) 307
BspMI ACCTGC 1 cut(s) 691
BspPI GGATC 1 cut(s) 358
BspQI GCTCTTC 2 cut(s) 318, 612
BspTNI GGTCTC 1 cut(s) 436
BsrBI CCGCTC 1 cut(s) 271
BsrFI RCCGGY 1 cut(s) 388
BsrI ACTGG 3 cut(s) 65, 359, 407
BssAI RCCGGY 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 2 cut(s) 350, 540
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 8 cut(s) 183, 318, 447, 498, 543, 555, 582, 612
BstAPI GCANNNNNTGC 1 cut(s) 635
BstC8I GCNNGC 3 cut(s) 142, 279, 330
BstDEI CTNAG 5 cut(s) 201, 364, 400, 639, 651
BstKTI GATC 2 cut(s) 353, 543
BstMAI GTCTC 3 cut(s) 367, 403, 436
BstMBI GATC 2 cut(s) 350, 540
BstMWI GCNNNNNNNGC 7 cut(s) 131, 137, 242, 635, 671, 674, 683
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 346
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 5 cut(s) 118, 268, 289, 652, 661
BstV2I GAAGAC 1 cut(s) 403
Bsu36I CCTNAGG 1 cut(s) 651
BsuRI GGCC 1 cut(s) 392
BveI ACCTGC 1 cut(s) 691
Cac8I GCNNGC 3 cut(s) 142, 279, 330
Cfr10I RCCGGY 1 cut(s) 388
Cfr13I GGNCC 3 cut(s) 15, 386, 404
Csp6I GTAC 1 cut(s) 295
CviAII CATG 1 cut(s) 633
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 5 cut(s) 201, 364, 400, 639, 651
DpnI GATC 2 cut(s) 352, 542
DpnII GATC 2 cut(s) 350, 540
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
Eam1104I CTCTTC 8 cut(s) 183, 318, 447, 498, 543, 555, 582, 612
EarI CTCTTC 8 cut(s) 183, 318, 447, 498, 543, 555, 582, 612
Eco130I CCWWGG 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 436
Eco47I GGWCC 3 cut(s) 15, 386, 404
Eco57I CTGAAG 4 cut(s) 147, 156, 522, 645
Eco81I CCTNAGG 1 cut(s) 651
EcoO109I RGGNCCY 1 cut(s) 15
EcoRI GAATTC 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
Esp3I CGTCTC 1 cut(s) 403
FaeI CATG 1 cut(s) 636
FaiI YATR 6 cut(s) 174, 229, 231, 384, 441, 634
FatI CATG 1 cut(s) 632
Fnu4HI GCNGC 5 cut(s) 132, 282, 303, 666, 675
Fsp4HI GCNGC 5 cut(s) 132, 282, 303, 666, 675
GluI GCNGC 5 cut(s) 132, 282, 303, 666, 675
HaeIII GGCC 1 cut(s) 392
HapII CCGG 2 cut(s) 389, 519
Hin1II CATG 1 cut(s) 636
HindIII AAGCTT 2 cut(s) 138, 234
HinfI GANTC 1 cut(s) 158
HpaII CCGG 2 cut(s) 389, 519
HphI GGTGA 1 cut(s) 586
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 3 cut(s) 88, 253, 519
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 6 cut(s) 85, 157, 190, 421, 451, 607
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 2 cut(s) 396, 437
HpyCH4V TGCA 3 cut(s) 144, 305, 686
HpyF10VI GCNNNNNNNGC 7 cut(s) 131, 137, 242, 635, 671, 674, 683
HpyF3I CTNAG 5 cut(s) 201, 364, 400, 639, 651
HpySE526I ACGT 2 cut(s) 396, 437
Hsp92II CATG 1 cut(s) 636
Kpn2I TCCGGA 1 cut(s) 518
Kzo9I GATC 2 cut(s) 350, 540
LguI GCTCTTC 2 cut(s) 318, 612
LmnI GCTCC 3 cut(s) 268, 466, 673
Lsp1109I GCAGC 5 cut(s) 118, 268, 289, 652, 661
LweI GCATC 2 cut(s) 380, 638
MaeII ACGT 2 cut(s) 396, 437
MaeIII GTNAC 2 cut(s) 56, 445
MalI GATC 2 cut(s) 352, 542
MbiI CCGCTC 1 cut(s) 271
MboI GATC 2 cut(s) 350, 540
MluCI AATT 3 cut(s) 43, 224, 341
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 8 cut(s) 250, 499, 556, 565, 583, 592, 598, 634
MroI TCCGGA 1 cut(s) 518
MseI TTAA 1 cut(s) 264
MspI CCGG 2 cut(s) 389, 519
MspR9I CCNGG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 348
MwoI GCNNNNNNNGC 7 cut(s) 131, 137, 242, 635, 671, 674, 683
NdeII GATC 2 cut(s) 350, 540
NlaIII CATG 1 cut(s) 636
NlaIV GGNNCC 1 cut(s) 468
NmuCI GTSAC 1 cut(s) 445
PciSI GCTCTTC 2 cut(s) 318, 612
PfoI TCCNGGA 1 cut(s) 346
PkrI GCNGC 5 cut(s) 133, 283, 304, 667, 676
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PpuMI RGGWCCY 1 cut(s) 15
Psp5II RGGWCCY 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 468
PspPI GGNCC 3 cut(s) 15, 386, 404
PspPPI RGGWCCY 1 cut(s) 15
PstI CTGCAG 1 cut(s) 307
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SapI GCTCTTC 2 cut(s) 318, 612
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 5 cut(s) 132, 282, 303, 666, 675
Sau3AI GATC 2 cut(s) 350, 540
Sau96I GGNCC 3 cut(s) 15, 386, 404
ScaI AGTACT 1 cut(s) 296
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 348
SfaNI GCATC 2 cut(s) 380, 638
SfcI CTRYAG 1 cut(s) 303
SinI GGWCC 3 cut(s) 15, 386, 404
Sse9I AATT 3 cut(s) 43, 224, 341
SsiI CCGC 2 cut(s) 271, 464
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 2 cut(s) 399, 440
TaqI TCGA 3 cut(s) 161, 353, 543
TasI AATT 3 cut(s) 43, 224, 341
TatI WGTACW 1 cut(s) 294
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 5 cut(s) 131, 281, 302, 665, 674
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 1 cut(s) 246
VpaK11BI GGWCC 3 cut(s) 15, 386, 404
XapI RAATTY 2 cut(s) 43, 341
ZrmI AGTACT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.