Rorug05G0071100

DREPP plasma membrane polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003896
Physical Location & Seq
Reverse (-)
6073727 .. 6074533
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0071100.1

Sequence Viewer

Length: 807 bp
ATGGCTGTACATAGTGTTAATCATGATTCTGCTGCTGCACCAGAAGCTATTCTCGAGAACGTGTGGGCCAGCTTTATTGGTGTTGATGGAGGGAATCAAGAAACAAGCAACACACCAGAAATGTCGAAATCATGGGAAGAACTGCCTAGTCTTGATGGGAGAGAAGGATCAATGGAAATTCTTCAAAGGCTACCAAGTCTCGGTAGGTGGATGTCAATGGGAGCTGAGGCCTGGGAAGAGCTTCTCGACACTCACATTATTCCTTCTTGTGATATTGAAAAGTCTTGCAATGAAAAATTAGAGGGAAATGAGGATGCCAAACCGGAAGCGGAAGAGAAGGTTGAGAGAGTAGAGAAAGTGGCAACAAAGCATTACCGCGGTGTTAGGAGACGGCCATGGGGAAAATATGCAGCAGAAATTCGAGACTCATCAAGAAAAGGAGCTAGAGTTTGGCTTGGGACTTTCGAGACTGCTGAGGAGGCAGCTCTGGCATATGACAAAGCTGCTTTAAGAATCAGAGGTACAAAAGCGCATCTTAACTTCCCTTTTGAAACAGTTGCAAAGGCTATGGGACTTGAGAATTGCAGCTTCAACAATATTTGTTCCTCCACAACTTCTTCTCAGAATGGTTTGAATCCTCGTAAGAGAGGAGTGAGAGAGTGGGAAGAAAATGTTGAGGTAATGACTGGAGAACCTGCATTAAAAAGAAACGCAAGCATGGAAAAGATGTTCGGAGATGAGTTTGATGTGTTTGAATTCCAAGACCTGGGAACTGATTACTTGGACAGTTTGCTCTCTTCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0001101 GO:0001558 GO:0002237 GO:0003674 GO:0005488 GO:0005507 GO:0005509 GO:0005515 GO:0005516 GO:0005543 GO:0005546 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005911 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010118 GO:0010350 GO:0010555 GO:0010638 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016032 GO:0016043 GO:0018377 GO:0019058 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0030308 GO:0030865 GO:0031110 GO:0031111 GO:0031112 GO:0031113 GO:0031114 GO:0031115 GO:0031117 GO:0031122 GO:0031224 GO:0031225 GO:0031226 GO:0031333 GO:0031365 GO:0031667 GO:0031668 GO:0031669 GO:0032026 GO:0032271 GO:0032272 GO:0032886 GO:0033043 GO:0033554 GO:0034645 GO:0035091 GO:0035864 GO:0035865 GO:0036211 GO:0040008 GO:0042157 GO:0042158 GO:0042221 GO:0042594 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043243 GO:0043244 GO:0043254 GO:0043325 GO:0043412 GO:0043543 GO:0043622 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044766 GO:0045926 GO:0046658 GO:0046688 GO:0046794 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051494 GO:0051495 GO:0051510 GO:0051511 GO:0051592 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070507 GO:0070887 GO:0071214 GO:0071216 GO:0071219 GO:0071241 GO:0071248 GO:0071280 GO:0071281 GO:0071286 GO:0071310 GO:0071322 GO:0071325 GO:0071470 GO:0071472 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072708 GO:0072709 GO:0075733 GO:0080025 GO:0090332 GO:0097435 GO:0098542 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0104004 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1901879 GO:1901881 GO:1901981 GO:1902579 GO:1902903 GO:1902904 GO:1902905 GO:1902936
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DREPP

Protein Analysis

268

Amino Acids

30.02

Weight (kDa)

4.91

Isoelectric Point (pI)

55.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 124 - 174 2.8e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 703
AccB7I CCANNNNNTGG 1 cut(s) 766
AccII CGCG 1 cut(s) 378
AciI CCGC 3 cut(s) 329, 376, 378
AclWI GGATC 1 cut(s) 175
AcoI YGGCCR 1 cut(s) 392
AcsI RAATTY 3 cut(s) 177, 417, 755
AfaI GTAC 2 cut(s) 9, 523
AfiI CCNNNNNNNGG 2 cut(s) 200, 766
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 6 cut(s) 185, 278, 551, 592, 634, 755
AjnI CCWGG 2 cut(s) 230, 765
AloI GAACNNNNNNTCC 2 cut(s) 713, 745
AluBI AGCT 8 cut(s) 47, 72, 224, 241, 443, 485, 503, 588
AluI AGCT 8 cut(s) 47, 72, 224, 241, 443, 485, 503, 588
Alw26I GTCTC 4 cut(s) 203, 382, 417, 461
AlwI GGATC 1 cut(s) 175
Ama87I CYCGRG 1 cut(s) 53
AoxI GGCC 3 cut(s) 66, 228, 392
ApeKI GCWGC 6 cut(s) 32, 35, 410, 482, 503, 585
ApoI RAATTY 3 cut(s) 177, 417, 755
Asp700I GAANNNNTTC 3 cut(s) 48, 180, 240
AspLEI GCGC 1 cut(s) 532
AspS9I GGNCC 1 cut(s) 66
AvaI CYCGRG 1 cut(s) 53
BbvCI CCTCAGC 2 cut(s) 225, 474
BbvI GCAGC 6 cut(s) 19, 22, 422, 490, 494, 597
BccI CCATC 2 cut(s) 80, 149
BceAI ACGGC 1 cut(s) 407
BciT130I CCWGG 2 cut(s) 232, 767
BcoDI GTCTC 4 cut(s) 203, 382, 417, 461
BfaI CTAG 2 cut(s) 147, 444
BfuAI ACCTGC 1 cut(s) 703
BisI GCNGC 6 cut(s) 33, 36, 411, 483, 504, 586
BlsI GCNGC 6 cut(s) 34, 37, 412, 484, 505, 587
Bme1390I CCNGG 2 cut(s) 232, 767
BmeT110I CYCGRG 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 66
BmrFI CCNGG 2 cut(s) 232, 767
BmsI GCATC 2 cut(s) 304, 541
BpmI CTGGAG 1 cut(s) 708
Bpu10I CCTNAGC 2 cut(s) 225, 474
BpuEI CTTGAG 1 cut(s) 596
BsaJI CCNNGG 4 cut(s) 231, 376, 395, 766
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 766
Bse1I ACTGG 1 cut(s) 691
Bse3DI GCAATG 1 cut(s) 295
BseBI CCWGG 2 cut(s) 232, 767
BseDI CCNNGG 4 cut(s) 231, 376, 395, 766
BseGI GGATG 2 cut(s) 216, 319
BseLI CCNNNNNNNGG 2 cut(s) 200, 766
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 3 cut(s) 216, 465, 635
BseNI ACTGG 1 cut(s) 691
BseRI GAGGAG 2 cut(s) 491, 663
BseXI GCAGC 6 cut(s) 19, 22, 422, 490, 494, 597
BsgI GTGCAG 1 cut(s) 21
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 3 cut(s) 68, 230, 394
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 323
BslFI GGGAC 2 cut(s) 472, 585
BslI CCNNNNNNNGG 2 cut(s) 200, 766
BsmAI GTCTC 4 cut(s) 203, 382, 417, 461
BsmBI CGTCTC 1 cut(s) 382
BsmFI GGGAC 2 cut(s) 472, 585
BsnI GGCC 3 cut(s) 68, 230, 394
BsoBI CYCGRG 1 cut(s) 53
Bsp1407I TGTACA 1 cut(s) 7
Bsp143I GATC 1 cut(s) 167
Bsp19I CCATGG 1 cut(s) 395
BspACI CCGC 3 cut(s) 329, 376, 378
BspANI GGCC 3 cut(s) 68, 230, 394
BspCNI CTCAG 3 cut(s) 217, 466, 634
BspFNI CGCG 1 cut(s) 378
BspHI TCATGA 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 703
BspPI GGATC 1 cut(s) 175
BspQI GCTCTTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 295
BsrGI TGTACA 1 cut(s) 7
BsrI ACTGG 1 cut(s) 691
BssECI CCNNGG 4 cut(s) 231, 376, 395, 766
BssMI GATC 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 395
Bst2UI CCWGG 2 cut(s) 232, 767
Bst4CI ACNGT 2 cut(s) 556, 788
Bst6I CTCTTC 3 cut(s) 231, 327, 802
BstAUI TGTACA 1 cut(s) 7
BstC8I GCNNGC 2 cut(s) 70, 715
BstDEI CTNAG 3 cut(s) 225, 474, 621
BstDSI CCRYGG 2 cut(s) 376, 395
BstF5I GGATG 2 cut(s) 216, 319
BstFNI CGCG 1 cut(s) 378
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 1 cut(s) 170
BstMAI GTCTC 4 cut(s) 203, 382, 417, 461
BstMBI GATC 1 cut(s) 167
BstMWI GCNNNNNNNGC 3 cut(s) 44, 479, 488
BstNI CCWGG 2 cut(s) 232, 767
BstSCI CCNGG 2 cut(s) 230, 765
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 6 cut(s) 19, 22, 422, 490, 494, 597
BsuRI GGCC 3 cut(s) 68, 230, 394
BtgI CCRYGG 2 cut(s) 376, 395
BtsCI GGATG 2 cut(s) 216, 319
BveI ACCTGC 1 cut(s) 703
Cac8I GCNNGC 2 cut(s) 70, 715
CciI TCATGA 1 cut(s) 22
CfoI GCGC 1 cut(s) 532
Cfr13I GGNCC 1 cut(s) 66
Cfr42I CCGCGG 1 cut(s) 379
Csp6I GTAC 2 cut(s) 8, 522
CviAII CATG 4 cut(s) 23, 132, 396, 718
CviQI GTAC 2 cut(s) 8, 522
DdeI CTNAG 3 cut(s) 225, 474, 621
DpnI GATC 1 cut(s) 169
DpnII GATC 1 cut(s) 167
EaeI YGGCCR 1 cut(s) 392
Eam1104I CTCTTC 3 cut(s) 231, 327, 802
EarI CTCTTC 3 cut(s) 231, 327, 802
Eco130I CCWWGG 1 cut(s) 395
Eco147I AGGCCT 1 cut(s) 230
Eco88I CYCGRG 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 755
EcoRII CCWGG 2 cut(s) 230, 765
EcoT14I CCWWGG 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 395
Esp3I CGTCTC 1 cut(s) 382
FaeI CATG 4 cut(s) 26, 135, 399, 721
FaiI YATR 9 cut(s) 12, 24, 133, 397, 408, 493, 495, 569, 719
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FaqI GGGAC 2 cut(s) 472, 585
FatI CATG 4 cut(s) 22, 131, 395, 717
FauNDI CATATG 1 cut(s) 493
Fnu4HI GCNGC 6 cut(s) 33, 36, 411, 483, 504, 586
FokI GGATG 2 cut(s) 223, 326
Fsp4HI GCNGC 6 cut(s) 33, 36, 411, 483, 504, 586
FspBI CTAG 2 cut(s) 147, 444
GlaI GCGC 1 cut(s) 531
GluI GCNGC 6 cut(s) 33, 36, 411, 483, 504, 586
GsuI CTGGAG 1 cut(s) 708
HaeIII GGCC 3 cut(s) 68, 230, 394
HapII CCGG 1 cut(s) 323
HhaI GCGC 1 cut(s) 532
Hin1II CATG 4 cut(s) 26, 135, 399, 721
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HinfI GANTC 5 cut(s) 26, 94, 425, 513, 634
HpaII CCGG 1 cut(s) 323
Hpy188I TCNGA 3 cut(s) 518, 624, 734
Hpy188III TCNNGA 9 cut(s) 23, 53, 55, 98, 152, 245, 422, 432, 466
HpyAV CCTTC 3 cut(s) 158, 273, 331
HpyCH4III ACNGT 2 cut(s) 556, 788
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 6 cut(s) 38, 288, 410, 560, 585, 698
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 479, 488
HpyF3I CTNAG 3 cut(s) 225, 474, 621
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 4 cut(s) 26, 135, 399, 721
HspAI GCGC 1 cut(s) 530
KspI CCGCGG 1 cut(s) 379
Kzo9I GATC 1 cut(s) 167
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 2 cut(s) 221, 440
Lsp1109I GCAGC 6 cut(s) 19, 22, 422, 490, 494, 597
LweI GCATC 2 cut(s) 304, 541
MaeI CTAG 2 cut(s) 147, 444
MaeII ACGT 1 cut(s) 60
MalI GATC 1 cut(s) 169
MboI GATC 1 cut(s) 167
MboII GAAGA 7 cut(s) 149, 173, 248, 344, 609, 677, 789
MluCI AATT 5 cut(s) 177, 296, 417, 580, 755
MlyI GAGTC 1 cut(s) 419
MroXI GAANNNNTTC 3 cut(s) 48, 180, 240
MseI TTAA 4 cut(s) 18, 509, 537, 701
MspA1I CMGCKG 1 cut(s) 378
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 2 cut(s) 232, 767
MvaI CCWGG 2 cut(s) 232, 767
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 3 cut(s) 44, 479, 488
NcoI CCATGG 1 cut(s) 395
NdeI CATATG 1 cut(s) 493
NdeII GATC 1 cut(s) 167
NlaIII CATG 4 cut(s) 26, 135, 399, 721
PaeR7I CTCGAG 1 cut(s) 53
PagI TCATGA 1 cut(s) 22
PceI AGGCCT 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 231
PdmI GAANNNNTTC 3 cut(s) 48, 180, 240
PfeI GAWTC 4 cut(s) 26, 94, 513, 634
PflMI CCANNNNNTGG 1 cut(s) 766
PkrI GCNGC 6 cut(s) 34, 37, 412, 484, 505, 587
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
Psp6I CCWGG 2 cut(s) 230, 765
PspGI CCWGG 2 cut(s) 230, 765
PspPI GGNCC 1 cut(s) 66
RsaI GTAC 2 cut(s) 9, 523
RsaNI GTAC 2 cut(s) 8, 522
SacII CCGCGG 1 cut(s) 379
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 4 cut(s) 18, 509, 537, 701
SatI GCNGC 6 cut(s) 33, 36, 411, 483, 504, 586
Sau3AI GATC 1 cut(s) 167
Sau96I GGNCC 1 cut(s) 66
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 2 cut(s) 232, 767
SfaNI GCATC 2 cut(s) 304, 541
Sfr274I CTCGAG 1 cut(s) 53
Sfr303I CCGCGG 1 cut(s) 379
SgrBI CCGCGG 1 cut(s) 379
SlaI CTCGAG 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 53, 575
SmoI CTYRAG 2 cut(s) 53, 575
Sse9I AATT 5 cut(s) 177, 296, 417, 580, 755
SseBI AGGCCT 1 cut(s) 230
SsiI CCGC 3 cut(s) 329, 376, 378
SspI AATATT 1 cut(s) 598
SspMI CTAG 2 cut(s) 147, 444
StuI AGGCCT 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 230, 765
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 2 cut(s) 556, 788
TaiI ACGT 1 cut(s) 63
TaqI TCGA 5 cut(s) 54, 125, 246, 421, 465
TasI AATT 5 cut(s) 177, 296, 417, 580, 755
TatI WGTACW 1 cut(s) 7
TfiI GAWTC 4 cut(s) 26, 94, 513, 634
Tru1I TTAA 4 cut(s) 18, 509, 537, 701
Tru9I TTAA 4 cut(s) 18, 509, 537, 701
TseI GCWGC 6 cut(s) 32, 35, 410, 482, 503, 585
TspDTI ATGAA 2 cut(s) 306, 789
Van91I CCANNNNNTGG 1 cut(s) 766
XapI RAATTY 3 cut(s) 177, 417, 755
XhoI CTCGAG 1 cut(s) 53
XmnI GAANNNNTTC 3 cut(s) 48, 180, 240
XspI CTAG 2 cut(s) 147, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.