AT5G44610

ATPCAP1, PCAP1 DREPP plasma membrane polypeptide family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003896
Physical Location & Seq
Reverse (-)
17993535 .. 17994722
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44610.1

Sequence Viewer

Length: 507 bp
ATGGGTTATTGGAAGTCGAAGGTTGTTCCAAGGATGAAGAAATTGTTCGAGAAGAGTCCAGCAAAAAAGGAAGTTGTTGAGGAGGAGAAGCCACGAGAGGTGGAAGTCGTGGAGGAGGTCGTCGTGAAAACCGAAGAACCGGCCAAGGAAGGAGAAACTAAACCGGAGGAAATAATTGCAACCGGCGAGAAAGAGATAGAAATAGTTGAAGAGAAGAAAGAAGAGGCTAAACCGGTGGAGGTTCCGGTCCTCGCAGCTGCGGAGGAGAAGAAGCCAGCCGTAGAAGAGGAGAAGAAGACGGCGCCGGTGGAAGAGAAGAAGCCAGCTGTGGAAGAGGAGAAGAAGCCTGCCGTGGAAGAGAAGAAACCTGTGGAGGAGGAGAAAAAAGAAGTTGTTGCCGCTGTTCCGGTGGCTGAAACTCCTTCGACTAAGGCTCCCGAAACTCCGGTGGTTGAAACTCCGGCCAAGGCTCCGGAAACTCCGGCGGCTGCGCCACAAAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DREPP

Protein Analysis

168

Amino Acids

18.55

Weight (kDa)

4.92

Isoelectric Point (pI)

72.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DREPP PF05558 1 - 25 4.7e-06 DREPP plasma membrane polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 301
AccIII TCCGGA 1 cut(s) 472
AciI CCGC 3 cut(s) 260, 399, 485
AcoI YGGCCR 2 cut(s) 141, 462
AcyI GRCGYC 1 cut(s) 302
AgeI ACCGGT 1 cut(s) 232
AgsI TTSAA 2 cut(s) 209, 455
AluBI AGCT 2 cut(s) 257, 326
AluI AGCT 2 cut(s) 257, 326
Aor13HI TCCGGA 1 cut(s) 472
AoxI GGCC 2 cut(s) 141, 462
ApeKI GCWGC 3 cut(s) 254, 257, 488
AsiGI ACCGGT 1 cut(s) 232
Asp700I GAANNNNTTC 1 cut(s) 44
AspLEI GCGC 2 cut(s) 304, 493
AspS9I GGNCC 1 cut(s) 247
AvaII GGWCC 1 cut(s) 247
BanI GGYRCC 1 cut(s) 301
BauI CACGAG 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 3 cut(s) 244, 266, 475
BceAI ACGGC 3 cut(s) 263, 315, 335
BfoI RGCGCY 1 cut(s) 305
BisI GCNGC 5 cut(s) 255, 258, 399, 486, 489
BlsI GCNGC 5 cut(s) 256, 259, 400, 487, 490
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 4 cut(s) 243, 303, 435, 471
BpiI GAAGAC 1 cut(s) 302
BsaHI GRCGYC 1 cut(s) 302
BsaJI CCNNGG 4 cut(s) 29, 144, 351, 465
BsaWI WCCGGW 6 cut(s) 163, 232, 244, 406, 445, 472
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bse118I RCCGGY 4 cut(s) 139, 182, 232, 304
BseAI TCCGGA 1 cut(s) 472
BseDI CCNNGG 4 cut(s) 29, 144, 351, 465
BseGI GGATG 1 cut(s) 39
BseRI GAGGAG 8 cut(s) 95, 98, 128, 278, 302, 350, 389, 392
BseXI GCAGC 3 cut(s) 244, 266, 475
BshFI GGCC 2 cut(s) 143, 464
BshNI GGYRCC 1 cut(s) 301
BshTI ACCGGT 1 cut(s) 232
BsnI GGCC 2 cut(s) 143, 464
Bsp13I TCCGGA 1 cut(s) 472
BspACI CCGC 3 cut(s) 260, 399, 485
BspANI GGCC 2 cut(s) 143, 464
BspEI TCCGGA 1 cut(s) 472
BspLI GGNNCC 4 cut(s) 243, 303, 435, 471
BspT107I GGYRCC 1 cut(s) 301
BsrFI RCCGGY 4 cut(s) 139, 182, 232, 304
BssAI RCCGGY 4 cut(s) 139, 182, 232, 304
BssECI CCNNGG 4 cut(s) 29, 144, 351, 465
BssNI GRCGYC 1 cut(s) 302
BssSI CACGAG 1 cut(s) 93
BssT1I CCWWGG 3 cut(s) 29, 144, 465
Bst2BI CACGAG 1 cut(s) 93
Bst6I CTCTTC 7 cut(s) 47, 204, 216, 279, 306, 327, 351
BstACI GRCGYC 1 cut(s) 302
BstC8I GCNNGC 3 cut(s) 276, 324, 348
BstDEI CTNAG 1 cut(s) 429
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 2 cut(s) 304, 493
BstV1I GCAGC 3 cut(s) 244, 266, 475
BstV2I GAAGAC 1 cut(s) 302
BsuRI GGCC 2 cut(s) 143, 464
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 1 cut(s) 39
Cac8I GCNNGC 3 cut(s) 276, 324, 348
CfoI GCGC 2 cut(s) 304, 493
Cfr10I RCCGGY 4 cut(s) 139, 182, 232, 304
Cfr13I GGNCC 1 cut(s) 247
CspAI ACCGGT 1 cut(s) 232
DdeI CTNAG 1 cut(s) 429
DinI GGCGCC 1 cut(s) 303
EaeI YGGCCR 2 cut(s) 141, 462
Eam1104I CTCTTC 7 cut(s) 47, 204, 216, 279, 306, 327, 351
EarI CTCTTC 7 cut(s) 47, 204, 216, 279, 306, 327, 351
Eco130I CCWWGG 3 cut(s) 29, 144, 465
Eco47I GGWCC 1 cut(s) 247
EcoT14I CCWWGG 3 cut(s) 29, 144, 465
EgeI GGCGCC 1 cut(s) 303
EheI GGCGCC 1 cut(s) 303
ErhI CCWWGG 3 cut(s) 29, 144, 465
Fnu4HI GCNGC 5 cut(s) 255, 258, 399, 486, 489
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 5 cut(s) 255, 258, 399, 486, 489
GlaI GCGC 2 cut(s) 303, 492
GluI GCNGC 5 cut(s) 255, 258, 399, 486, 489
HaeII RGCGCY 1 cut(s) 305
HaeIII GGCC 2 cut(s) 143, 464
HhaI GCGC 2 cut(s) 304, 493
Hin1I GRCGYC 1 cut(s) 302
Hin6I GCGC 2 cut(s) 302, 491
HinP1I GCGC 2 cut(s) 302, 491
HinfI GANTC 1 cut(s) 55
Hpy188III TCNNGA 4 cut(s) 49, 124, 437, 473
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 3 cut(s) 13, 143, 432
HpyCH4V TGCA 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 429
Hsp92I GRCGYC 1 cut(s) 302
HspAI GCGC 2 cut(s) 302, 491
KasI GGCGCC 1 cut(s) 301
Kpn2I TCCGGA 1 cut(s) 472
LmnI GCTCC 2 cut(s) 439, 475
Lsp1109I GCAGC 3 cut(s) 244, 266, 475
MluCI AATT 2 cut(s) 41, 174
Mly113I GGCGCC 1 cut(s) 302
MlyI GAGTC 1 cut(s) 64
MroI TCCGGA 1 cut(s) 472
MroXI GAANNNNTTC 1 cut(s) 44
MspA1I CMGCKG 3 cut(s) 257, 326, 401
NarI GGCGCC 1 cut(s) 302
NlaIV GGNNCC 4 cut(s) 243, 303, 435, 471
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 44
PinAI ACCGGT 1 cut(s) 232
PkrI GCNGC 5 cut(s) 256, 259, 400, 487, 490
PleI GAGTC 1 cut(s) 63
PluTI GGCGCC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 63
PspN4I GGNNCC 4 cut(s) 243, 303, 435, 471
PspPI GGNCC 1 cut(s) 247
PvuII CAGCTG 2 cut(s) 257, 326
SatI GCNGC 5 cut(s) 255, 258, 399, 486, 489
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 1 cut(s) 64
SetI ASST 7 cut(s) 24, 102, 120, 243, 259, 328, 370
SfoI GGCGCC 1 cut(s) 303
SgrAI CRCCGGYG 1 cut(s) 304
SinI GGWCC 1 cut(s) 247
Sse9I AATT 2 cut(s) 41, 174
SsiI CCGC 3 cut(s) 260, 399, 485
SspDI GGCGCC 1 cut(s) 301
StyI CCWWGG 3 cut(s) 29, 144, 465
TaqI TCGA 3 cut(s) 17, 48, 425
TasI AATT 2 cut(s) 41, 174
TauI GCSGC 2 cut(s) 401, 488
TseI GCWGC 3 cut(s) 254, 257, 488
TspDTI ATGAA 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.