Rorug05G0071000

DREPP plasma membrane polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003896
Physical Location & Seq
Reverse (-)
6070436 .. 6071521
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0071000.1

Sequence Viewer

Length: 462 bp
ATGGAGCTAATAGATCATTATAAGGTTCTTGATTTACCATCGGGCGATGAAGGCGCTAAGCTTACAGAGCAAGAGATTACAAAGAGATACAAAGCAAAGGCTTTGCTCTTGCATCCAGACAAGAGGCCAGACTATCCCCTCGCCGGCGCCGAGTTCCAACAGCTCAAGGAGTCCTATGAGGTACTCAAGGACCCAGAATCCAGGAAAAATTTTCACACTCTTTTACGCCTCTATAAGATTACATTAGGTGAGGTGTTCATCTGGGCTACTGGTTTTTCATGTTTCGTGGTGGGGGGTTTGGCGGCTGCTGGTACAGTGTGTGCAGTAAATGGGACCTGTAGCCTTGTTAAGAATGTATGTGTGGGAACTGCGGATTCAATAGGCTGGGCATGCGATTCTGTGACGAGGGTAATCAGAAATAAAGAACCAGAAAATAATATCGAGGAATGGGAGATGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0001101 GO:0001558 GO:0002237 GO:0003674 GO:0005488 GO:0005507 GO:0005509 GO:0005515 GO:0005516 GO:0005543 GO:0005546 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005911 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010118 GO:0010350 GO:0010555 GO:0010638 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016032 GO:0016043 GO:0018377 GO:0019058 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0030308 GO:0030865 GO:0031110 GO:0031111 GO:0031112 GO:0031113 GO:0031114 GO:0031115 GO:0031117 GO:0031122 GO:0031224 GO:0031225 GO:0031226 GO:0031333 GO:0031365 GO:0031667 GO:0031668 GO:0031669 GO:0032026 GO:0032271 GO:0032272 GO:0032886 GO:0033043 GO:0033554 GO:0034645 GO:0035091 GO:0035864 GO:0035865 GO:0036211 GO:0040008 GO:0042157 GO:0042158 GO:0042221 GO:0042594 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043243 GO:0043244 GO:0043254 GO:0043325 GO:0043412 GO:0043543 GO:0043622 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044766 GO:0045926 GO:0046658 GO:0046688 GO:0046794 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051494 GO:0051495 GO:0051510 GO:0051511 GO:0051592 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070507 GO:0070887 GO:0071214 GO:0071216 GO:0071219 GO:0071241 GO:0071248 GO:0071280 GO:0071281 GO:0071286 GO:0071310 GO:0071322 GO:0071325 GO:0071470 GO:0071472 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072708 GO:0072709 GO:0075733 GO:0080025 GO:0090332 GO:0097435 GO:0098542 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0104004 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1901879 GO:1901881 GO:1901981 GO:1902579 GO:1902903 GO:1902904 GO:1902905 GO:1902936
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DREPP

Protein Analysis

153

Amino Acids

17.08

Weight (kDa)

5.42

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 5 - 71 5.2e-16 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 146
AciI CCGC 2 cut(s) 302, 371
AcsI RAATTY 1 cut(s) 208
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 2 cut(s) 183, 313
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 1 cut(s) 378
AjnI CCWGG 1 cut(s) 200
AluBI AGCT 3 cut(s) 7, 61, 163
AluI AGCT 3 cut(s) 7, 61, 163
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 1 cut(s) 208
AspLEI GCGC 2 cut(s) 56, 149
AspS9I GGNCC 2 cut(s) 190, 333
AsuHPI GGTGA 1 cut(s) 260
AvaII GGWCC 2 cut(s) 190, 333
BanI GGYRCC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 202
BfmI CTRYAG 1 cut(s) 337
BfoI RGCGCY 2 cut(s) 57, 150
BisI GCNGC 2 cut(s) 303, 306
BlpI GCTNAGC 1 cut(s) 57
BlsI GCNGC 2 cut(s) 304, 307
Bme1390I CCNGG 1 cut(s) 202
Bme18I GGWCC 2 cut(s) 190, 333
BmgT120I GGNCC 2 cut(s) 190, 333
BmiI GGNNCC 3 cut(s) 148, 192, 334
BmrFI CCNGG 1 cut(s) 202
BmsI GCATC 1 cut(s) 121
Bpu1102I GCTNAGC 1 cut(s) 57
BpuEI CTTGAG 2 cut(s) 149, 170
BsaHI GRCGYC 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 274
BseBI CCWGG 1 cut(s) 202
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 274
BseXI GCAGC 1 cut(s) 292
BseYI CCCAGC 1 cut(s) 384
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 1 cut(s) 127
BshNI GGYRCC 1 cut(s) 146
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 346
BsnI GGCC 1 cut(s) 127
Bsp143I GATC 1 cut(s) 13
Bsp1720I GCTNAGC 1 cut(s) 57
BspACI CCGC 2 cut(s) 302, 371
BspANI GGCC 1 cut(s) 127
BspLI GGNNCC 3 cut(s) 148, 192, 334
BspT107I GGYRCC 1 cut(s) 146
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 1 cut(s) 274
BssAI RCCGGY 1 cut(s) 143
BssMI GATC 1 cut(s) 13
BssNI GRCGYC 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 316
BstACI GRCGYC 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 145, 391
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 112
BstH2I RGCGCY 2 cut(s) 57, 150
BstHHI GCGC 2 cut(s) 56, 149
BstKTI GATC 1 cut(s) 16
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 3 cut(s) 51, 67, 390
BstNI CCWGG 1 cut(s) 202
BstNSI RCATGY 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 292
BsuRI GGCC 1 cut(s) 127
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 2 cut(s) 145, 391
CfoI GCGC 2 cut(s) 56, 149
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 2 cut(s) 190, 333
Csp6I GTAC 2 cut(s) 182, 312
CviAII CATG 2 cut(s) 279, 390
CviJI RGCY 9 cut(s) 7, 61, 101, 127, 163, 266, 305, 342, 384
CviKI_1 RGCY 9 cut(s) 7, 61, 101, 127, 163, 266, 305, 342, 384
CviQI GTAC 2 cut(s) 182, 312
DdeI CTNAG 1 cut(s) 57
DinI GGCGCC 1 cut(s) 148
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Eco47I GGWCC 2 cut(s) 190, 333
EcoO109I RGGNCCY 2 cut(s) 190, 333
EcoRII CCWGG 1 cut(s) 200
EgeI GGCGCC 1 cut(s) 148
EheI GGCGCC 1 cut(s) 148
FaeI CATG 2 cut(s) 282, 393
FaiI YATR 6 cut(s) 21, 177, 234, 280, 358, 391
FaqI GGGAC 1 cut(s) 346
FatI CATG 2 cut(s) 278, 389
Fnu4HI GCNGC 2 cut(s) 303, 306
FokI GGATG 1 cut(s) 99
Fsp4HI GCNGC 2 cut(s) 303, 306
GlaI GCGC 2 cut(s) 55, 148
GluI GCNGC 2 cut(s) 303, 306
GsaI CCCAGC 1 cut(s) 388
HaeII RGCGCY 2 cut(s) 57, 150
HaeIII GGCC 1 cut(s) 127
HapII CCGG 1 cut(s) 144
HhaI GCGC 2 cut(s) 56, 149
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 2 cut(s) 282, 393
Hin6I GCGC 2 cut(s) 54, 147
HinP1I GCGC 2 cut(s) 54, 147
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 4 cut(s) 170, 197, 374, 395
HpaII CCGG 1 cut(s) 144
HphI GGTGA 1 cut(s) 260
Hpy188I TCNGA 1 cut(s) 416
Hpy188III TCNNGA 2 cut(s) 29, 116
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4V TGCA 2 cut(s) 112, 323
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 67, 390
HpyF3I CTNAG 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 2 cut(s) 282, 393
HspAI GCGC 2 cut(s) 54, 147
KasI GGCGCC 1 cut(s) 146
KroI GCCGGC 1 cut(s) 143
KroNI GCCGGC 1 cut(s) 145
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 400
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MluCI AATT 1 cut(s) 208
Mly113I GGCGCC 1 cut(s) 147
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 7 cut(s) 117, 149, 172, 239, 244, 399, 436
MreI CGCCGGCG 1 cut(s) 143
MroNI GCCGGC 1 cut(s) 143
MseI TTAA 2 cut(s) 348, 460
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 202
MvaI CCWGG 1 cut(s) 202
MwoI GCNNNNNNNGC 3 cut(s) 51, 67, 390
NaeI GCCGGC 1 cut(s) 145
NarI GGCGCC 1 cut(s) 147
NdeII GATC 1 cut(s) 13
NgoMIV GCCGGC 1 cut(s) 143
NlaIII CATG 2 cut(s) 282, 393
NlaIV GGNNCC 3 cut(s) 148, 192, 334
NmeAIII GCCGAG 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 400
NspI RCATGY 1 cut(s) 393
PaeI GCATGC 1 cut(s) 393
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdiI GCCGGC 1 cut(s) 145
PfeI GAWTC 3 cut(s) 197, 374, 395
PfoI TCCNGGA 1 cut(s) 200
PkrI GCNGC 2 cut(s) 304, 307
PleI GAGTC 1 cut(s) 178
PluTI GGCGCC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 178
PpuMI RGGWCCY 2 cut(s) 190, 333
PsiI TTATAA 1 cut(s) 21
Psp5II RGGWCCY 2 cut(s) 190, 333
Psp6I CCWGG 1 cut(s) 200
PspFI CCCAGC 1 cut(s) 384
PspGI CCWGG 1 cut(s) 200
PspN4I GGNNCC 3 cut(s) 148, 192, 334
PspPI GGNCC 2 cut(s) 190, 333
PspPPI RGGWCCY 2 cut(s) 190, 333
RsaI GTAC 2 cut(s) 183, 313
RsaNI GTAC 2 cut(s) 182, 312
SaqAI TTAA 2 cut(s) 348, 460
SatI GCNGC 2 cut(s) 303, 306
Sau3AI GATC 1 cut(s) 13
Sau96I GGNCC 2 cut(s) 190, 333
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 202
SetI ASST 8 cut(s) 9, 27, 63, 165, 183, 250, 255, 338
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 1 cut(s) 337
SfoI GGCGCC 1 cut(s) 148
SgrAI CRCCGGYG 1 cut(s) 143
SinI GGWCC 2 cut(s) 190, 333
SmlI CTYRAG 2 cut(s) 164, 185
SmoI CTYRAG 2 cut(s) 164, 185
SphI GCATGC 1 cut(s) 393
Sse9I AATT 1 cut(s) 208
SsiI CCGC 2 cut(s) 302, 371
SspDI GGCGCC 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 316
TaqI TCGA 1 cut(s) 441
TasI AATT 1 cut(s) 208
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 3 cut(s) 197, 374, 395
Tru1I TTAA 2 cut(s) 348, 460
Tru9I TTAA 2 cut(s) 348, 460
TscAI CASTG 1 cut(s) 321
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 3 cut(s) 63, 247, 267
TspRI CASTG 1 cut(s) 321
VpaK11BI GGWCC 2 cut(s) 190, 333
XapI RAATTY 1 cut(s) 208
XceI RCATGY 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.