FvH4_3g13370

Plasma membrane-associated cation-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003896
Physical Location & Seq
Forward (+)
7995006 .. 7996892
1887 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13370.t1

Sequence Viewer

Length: 648 bp
ATGGGTTACTGGAAAACAAAGGTGCTTCCCACAATCAAGAAGGTGTTTGAGAACAAGACCAGTGTCAAGAAGGCTGCTGCTGCTGATGCTTGCAAGTCCTTTGATGAGTCTAAGGAGAGTTATGACAAGGAGTTCGAAGAGAAGAAGGCTGAGTATCAAGTTAAAGTACTTGAATTATATGAAGCTTCCTCTGCTGAAGTCAAGACTTTGATCAAGGAGAGGAAGGAGGCAGCTTTGAAGAAGTACTCTGCTGCAGTCCACAAGTTCCTTGAAGAGCTTGCCAAAATAGAATTTCCAGGATCGAAACCAGTCTCAGAAGCATCAGAAAAGTATGGAGCGGCCTACGTCCCAGGTCCAGTCTTCTATGTGTTTGAGAAGGTGTCAACGTATATTGTGACAGAAAAGAAGGTAGAGGAGCCAACGCCAGCAGAACCAACACCAGCCAAAGCCGAAGAGGAAACAAGTTCCTCAAAAGAAAAGGAGATAGTGATCGAAGAAGAGAAGAAGGAAGATGTTGTAGAGGTGAAGAAAGAAGAAGAAGAAGTGGTGGCAGTGGAGGAGAAGAAGGAAGAGCCTGAAGCATGTGTTGAGGAAAAGCCTAAGGTTGAGGAACCTGCTCCTGCTTGTGAAGAGCCAGCAAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0001101 GO:0001558 GO:0002237 GO:0003674 GO:0005488 GO:0005507 GO:0005509 GO:0005515 GO:0005516 GO:0005543 GO:0005546 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005911 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010118 GO:0010350 GO:0010555 GO:0010638 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016032 GO:0016043 GO:0018377 GO:0019058 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0030308 GO:0030865 GO:0031110 GO:0031111 GO:0031112 GO:0031113 GO:0031114 GO:0031115 GO:0031117 GO:0031122 GO:0031224 GO:0031225 GO:0031226 GO:0031333 GO:0031365 GO:0031667 GO:0031668 GO:0031669 GO:0032026 GO:0032271 GO:0032272 GO:0032886 GO:0033043 GO:0033554 GO:0034645 GO:0035091 GO:0035864 GO:0035865 GO:0036211 GO:0040008 GO:0042157 GO:0042158 GO:0042221 GO:0042594 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043243 GO:0043244 GO:0043254 GO:0043325 GO:0043412 GO:0043543 GO:0043622 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044766 GO:0045926 GO:0046658 GO:0046688 GO:0046794 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051494 GO:0051495 GO:0051510 GO:0051511 GO:0051592 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070507 GO:0070887 GO:0071214 GO:0071216 GO:0071219 GO:0071241 GO:0071248 GO:0071280 GO:0071281 GO:0071286 GO:0071310 GO:0071322 GO:0071325 GO:0071470 GO:0071472 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072708 GO:0072709 GO:0075733 GO:0080025 GO:0090332 GO:0097435 GO:0098542 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0104004 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1901879 GO:1901881 GO:1901981 GO:1902579 GO:1902903 GO:1902904 GO:1902905 GO:1902936
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DREPP

Protein Analysis

216

Amino Acids

24.22

Weight (kDa)

4.94

Isoelectric Point (pI)

62.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DREPP PF05558 1 - 206 2.7e-72 DREPP plasma membrane polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 622
AccBSI CCGCTC 1 cut(s) 338
AciI CCGC 1 cut(s) 338
AclWI GGATC 1 cut(s) 307
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 2 cut(s) 216, 597
AfaI GTAC 2 cut(s) 168, 245
AgsI TTSAA 3 cut(s) 173, 238, 272
AjnI CCWGG 2 cut(s) 295, 349
AluBI AGCT 3 cut(s) 185, 233, 277
AluI AGCT 3 cut(s) 185, 233, 277
Alw26I GTCTC 1 cut(s) 316
AlwI GGATC 1 cut(s) 307
AoxI GGCC 1 cut(s) 339
ApeKI GCWGC 5 cut(s) 74, 77, 80, 230, 251
ApoI RAATTY 1 cut(s) 290
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
AspS9I GGNCC 1 cut(s) 353
AsuHPI GGTGA 1 cut(s) 535
AsuII TTCGAA 1 cut(s) 135
AvaII GGWCC 1 cut(s) 353
AxyI CCTNAGG 1 cut(s) 600
BbsI GAAGAC 1 cut(s) 352
BbvI GCAGC 5 cut(s) 61, 64, 67, 238, 242
BciT130I CCWGG 2 cut(s) 297, 351
BclI TGATCA 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 316
BfmI CTRYAG 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 622
BisI GCNGC 6 cut(s) 75, 78, 81, 231, 252, 339
BlsI GCNGC 6 cut(s) 76, 79, 82, 232, 253, 340
BmcAI AGTACT 2 cut(s) 168, 245
Bme1390I CCNGG 2 cut(s) 297, 351
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 1 cut(s) 353
BmiI GGNNCC 2 cut(s) 417, 612
BmrFI CCNGG 2 cut(s) 297, 351
BmsI GCATC 2 cut(s) 76, 329
BoxI GACNNNNGTC 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 352
Bpu14I TTCGAA 1 cut(s) 135
BsaBI GATNNNNATC 1 cut(s) 488
BsaJI CCNNGG 1 cut(s) 349
Bse1I ACTGG 4 cut(s) 14, 60, 308, 356
Bse21I CCTNAGG 1 cut(s) 600
Bse8I GATNNNNATC 1 cut(s) 488
BseBI CCWGG 2 cut(s) 297, 351
BseDI CCNNGG 1 cut(s) 349
BseJI GATNNNNATC 1 cut(s) 488
BseMII CTCAG 2 cut(s) 141, 327
BseNI ACTGG 4 cut(s) 14, 60, 308, 356
BseRI GAGGAG 2 cut(s) 428, 572
BseXI GCAGC 5 cut(s) 61, 64, 67, 238, 242
BshFI GGCC 1 cut(s) 341
BslFI GGGAC 1 cut(s) 332
BsmAI GTCTC 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 1 cut(s) 341
Bsp119I TTCGAA 1 cut(s) 135
Bsp143I GATC 3 cut(s) 210, 299, 489
BspACI CCGC 1 cut(s) 338
BspANI GGCC 1 cut(s) 341
BspCNI CTCAG 2 cut(s) 142, 326
BspLI GGNNCC 2 cut(s) 417, 612
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 622
BspPI GGATC 1 cut(s) 307
BspQI GCTCTTC 3 cut(s) 267, 564, 624
BspT104I TTCGAA 1 cut(s) 135
BsrBI CCGCTC 1 cut(s) 338
BsrI ACTGG 4 cut(s) 14, 60, 308, 356
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 3 cut(s) 210, 299, 489
Bst2UI CCWGG 2 cut(s) 297, 351
Bst6I CTCTTC 6 cut(s) 132, 267, 447, 492, 564, 624
BstBI TTCGAA 1 cut(s) 135
BstC8I GCNNGC 4 cut(s) 91, 279, 426, 636
BstDEI CTNAG 4 cut(s) 111, 150, 313, 600
BstKTI GATC 3 cut(s) 213, 302, 492
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 3 cut(s) 210, 299, 489
BstMWI GCNNNNNNNGC 4 cut(s) 80, 86, 191, 640
BstNI CCWGG 2 cut(s) 297, 351
BstNSI RCATGY 1 cut(s) 585
BstPAI GACNNNNGTC 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 295, 349
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 5 cut(s) 61, 64, 67, 238, 242
BstV2I GAAGAC 1 cut(s) 352
Bsu36I CCTNAGG 1 cut(s) 600
BsuRI GGCC 1 cut(s) 341
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 2 cut(s) 67, 558
BveI ACCTGC 1 cut(s) 622
Cac8I GCNNGC 4 cut(s) 91, 279, 426, 636
Cfr13I GGNCC 1 cut(s) 353
Csp6I GTAC 2 cut(s) 167, 244
CviAII CATG 1 cut(s) 582
CviQI GTAC 2 cut(s) 167, 244
DdeI CTNAG 4 cut(s) 111, 150, 313, 600
DpnI GATC 3 cut(s) 212, 301, 491
DpnII GATC 3 cut(s) 210, 299, 489
Eam1104I CTCTTC 6 cut(s) 132, 267, 447, 492, 564, 624
EarI CTCTTC 6 cut(s) 132, 267, 447, 492, 564, 624
Eco47I GGWCC 1 cut(s) 353
Eco57I CTGAAG 2 cut(s) 216, 597
Eco81I CCTNAGG 1 cut(s) 600
EcoRII CCWGG 2 cut(s) 295, 349
FaeI CATG 1 cut(s) 585
FaiI YATR 7 cut(s) 123, 178, 180, 333, 366, 390, 583
FaqI GGGAC 1 cut(s) 332
FatI CATG 1 cut(s) 581
FbaI TGATCA 1 cut(s) 210
Fnu4HI GCNGC 6 cut(s) 75, 78, 81, 231, 252, 339
Fsp4HI GCNGC 6 cut(s) 75, 78, 81, 231, 252, 339
GluI GCNGC 6 cut(s) 75, 78, 81, 231, 252, 339
HaeIII GGCC 1 cut(s) 341
Hin1II CATG 1 cut(s) 585
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 1 cut(s) 107
HphI GGTGA 1 cut(s) 535
Hpy166II GTNNAC 2 cut(s) 259, 384
Hpy188I TCNGA 2 cut(s) 316, 325
Hpy188III TCNNGA 3 cut(s) 37, 67, 202
Hpy8I GTNNAC 2 cut(s) 259, 384
HpyAV CCTTC 8 cut(s) 34, 64, 139, 217, 370, 400, 499, 559
HpyCH4IV ACGT 2 cut(s) 345, 386
HpyCH4V TGCA 2 cut(s) 93, 254
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 86, 191, 640
HpyF3I CTNAG 4 cut(s) 111, 150, 313, 600
HpySE526I ACGT 2 cut(s) 345, 386
Hsp92II CATG 1 cut(s) 585
Ksp22I TGATCA 1 cut(s) 210
Kzo9I GATC 3 cut(s) 210, 299, 489
LguI GCTCTTC 3 cut(s) 267, 564, 624
LmnI GCTCC 3 cut(s) 335, 415, 622
Lsp1109I GCAGC 5 cut(s) 61, 64, 67, 238, 242
LweI GCATC 2 cut(s) 76, 329
MaeII ACGT 2 cut(s) 345, 386
MaeIII GTNAC 2 cut(s) 5, 394
MalI GATC 3 cut(s) 212, 301, 491
MbiI CCGCTC 1 cut(s) 338
MboI GATC 3 cut(s) 210, 299, 489
MluCI AATT 2 cut(s) 173, 290
MlyI GAGTC 1 cut(s) 116
MseI TTAA 1 cut(s) 162
MspR9I CCNGG 2 cut(s) 297, 351
MvaI CCWGG 2 cut(s) 297, 351
MwoI GCNNNNNNNGC 4 cut(s) 80, 86, 191, 640
NdeII GATC 3 cut(s) 210, 299, 489
NlaIII CATG 1 cut(s) 585
NlaIV GGNNCC 2 cut(s) 417, 612
NmuCI GTSAC 1 cut(s) 394
NspI RCATGY 1 cut(s) 585
NspV TTCGAA 1 cut(s) 135
PciSI GCTCTTC 3 cut(s) 267, 564, 624
PfoI TCCNGGA 1 cut(s) 295
PkrI GCNGC 6 cut(s) 76, 79, 82, 232, 253, 340
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PshAI GACNNNNGTC 1 cut(s) 62
Psp6I CCWGG 2 cut(s) 295, 349
PspGI CCWGG 2 cut(s) 295, 349
PspN4I GGNNCC 2 cut(s) 417, 612
PspPI GGNCC 1 cut(s) 353
PstI CTGCAG 1 cut(s) 256
RsaI GTAC 2 cut(s) 168, 245
RsaNI GTAC 2 cut(s) 167, 244
SapI GCTCTTC 3 cut(s) 267, 564, 624
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 6 cut(s) 75, 78, 81, 231, 252, 339
Sau3AI GATC 3 cut(s) 210, 299, 489
Sau96I GGNCC 1 cut(s) 353
ScaI AGTACT 2 cut(s) 168, 245
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 297, 351
SfaNI GCATC 2 cut(s) 76, 329
SfcI CTRYAG 1 cut(s) 252
SfuI TTCGAA 1 cut(s) 135
SinI GGWCC 1 cut(s) 353
Sse9I AATT 2 cut(s) 173, 290
SsiI CCGC 1 cut(s) 338
StyD4I CCNGG 2 cut(s) 295, 349
TaiI ACGT 2 cut(s) 348, 389
TaqI TCGA 3 cut(s) 135, 302, 492
TasI AATT 2 cut(s) 173, 290
TatI WGTACW 2 cut(s) 166, 243
TauI GCSGC 1 cut(s) 341
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 2 cut(s) 67, 558
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 5 cut(s) 74, 77, 80, 230, 251
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 1 cut(s) 195
TspRI CASTG 2 cut(s) 67, 558
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 1 cut(s) 290
XceI RCATGY 1 cut(s) 585
ZrmI AGTACT 2 cut(s) 168, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.