Rh5AG159000

DREPP plasma membrane polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003896
Physical Location & Seq
Forward (+)
16927853 .. 16930174
2322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG159000.1

Sequence Viewer

Length: 825 bp
ATGATCTTCTTAATAGGGTTCTTAGTCTCTTTGCTTAATTCATCAAGCTCAAGTATATATGTGTTTTTGGGTTCTGTGAAATATTACAAAATTTTCATGATCAACTTTTCATGTATATATAAGATTTTTGCCTTTGTTTGGATGGTTCTCAGGGTATTTGAGTTTGAGAAGAATTCAAAGATGGGTTACTGGAAAACAAAGGTGCTTCCCACAATCAAGAAGGTGTTTGAGAACAAGGGCAGTATCAAAAAGGCTGAAGCTGCTGAAGCTTGCAAGACCTTTGATGAGTCGAAGGAGAGTTATGCCAAGGAGTTTGAAGAGAAGAAGGACGAGTATCAAGTAAAAGTAGTTGAATTATATGAAGCTTCCTCTGCTGAAATCAAGACTTTGATTAAGGAGCGGAAGCTGGCTGGGTTGAAGAAGTACTCTGCTGCGGTCCACAAGTTCCTTGAAGAGCTTGCCAAGATAGACTTTCCAGGATCGAAACCAGTCTCAGAAGCATCATCAAAGTATGGACCGGCCTACGTCTCAGGTCCAGTCTTCTTTGTGTTTGAGAAGGTCTCAACGTATATTGTGACAGAAGAGAAGGTAGCGGAGCCAACGCCACCAGAACCAACACCAGCTAAAGCCGAAGAGGAAACAAGTTCCAGAAAAGAAAAGGAGATAGTGATCGAAGAAGAGAAGAAGGAAGAGGTTGTAGAGGTGAAGAAAGAAGAAGAGGTGGTGGTGGTGGAGGAGAAGAAGGAAGAGCCTGAAGCATCATGTGGTGAGGAAAAGCCTAAGGAGGAGGAAGCTGCTCCTGCTGCTGAACCAGCAAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0001101 GO:0001558 GO:0002237 GO:0003674 GO:0005488 GO:0005507 GO:0005509 GO:0005515 GO:0005516 GO:0005543 GO:0005546 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005911 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010118 GO:0010350 GO:0010555 GO:0010638 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016032 GO:0016043 GO:0018377 GO:0019058 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0030308 GO:0030865 GO:0031110 GO:0031111 GO:0031112 GO:0031113 GO:0031114 GO:0031115 GO:0031117 GO:0031122 GO:0031224 GO:0031225 GO:0031226 GO:0031333 GO:0031365 GO:0031667 GO:0031668 GO:0031669 GO:0032026 GO:0032271 GO:0032272 GO:0032886 GO:0033043 GO:0033554 GO:0034645 GO:0035091 GO:0035864 GO:0035865 GO:0036211 GO:0040008 GO:0042157 GO:0042158 GO:0042221 GO:0042594 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043243 GO:0043244 GO:0043254 GO:0043325 GO:0043412 GO:0043543 GO:0043622 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044766 GO:0045926 GO:0046658 GO:0046688 GO:0046794 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051494 GO:0051495 GO:0051510 GO:0051511 GO:0051592 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070507 GO:0070887 GO:0071214 GO:0071216 GO:0071219 GO:0071241 GO:0071248 GO:0071280 GO:0071281 GO:0071286 GO:0071310 GO:0071322 GO:0071325 GO:0071470 GO:0071472 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072708 GO:0072709 GO:0075733 GO:0080025 GO:0090332 GO:0097435 GO:0098542 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0104004 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1901879 GO:1901881 GO:1901981 GO:1902579 GO:1902903 GO:1902904 GO:1902905 GO:1902936
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DREPP

Protein Analysis

274

Amino Acids

31.12

Weight (kDa)

5.29

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DREPP PF05558 61 - 268 1.3e-75 DREPP plasma membrane polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 400
AciI CCGC 3 cut(s) 400, 434, 593
AclWI GGATC 1 cut(s) 487
AcsI RAATTY 2 cut(s) 90, 172
AcuI CTGAAG 3 cut(s) 276, 285, 774
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 5 cut(s) 177, 317, 353, 418, 452
AjnI CCWGG 1 cut(s) 475
AluBI AGCT 8 cut(s) 48, 260, 269, 365, 406, 457, 623, 794
AluI AGCT 8 cut(s) 48, 260, 269, 365, 406, 457, 623, 794
Alw26I GTCTC 4 cut(s) 31, 496, 532, 565
AlwI GGATC 1 cut(s) 487
AoxI GGCC 1 cut(s) 519
ApeKI GCWGC 4 cut(s) 260, 431, 794, 803
ApoI RAATTY 2 cut(s) 90, 172
AspS9I GGNCC 3 cut(s) 436, 515, 533
AsuHPI GGTGA 2 cut(s) 715, 779
AvaII GGWCC 3 cut(s) 436, 515, 533
AxyI CCTNAGG 1 cut(s) 780
BbsI GAAGAC 1 cut(s) 532
BbvI GCAGC 4 cut(s) 247, 418, 781, 790
BccI CCATC 2 cut(s) 136, 175
BciT130I CCWGG 1 cut(s) 477
BclI TGATCA 1 cut(s) 99
BcoDI GTCTC 4 cut(s) 31, 496, 532, 565
BisI GCNGC 4 cut(s) 261, 432, 795, 804
BlsI GCNGC 4 cut(s) 262, 433, 796, 805
BmcAI AGTACT 1 cut(s) 425
Bme1390I CCNGG 1 cut(s) 477
Bme18I GGWCC 3 cut(s) 436, 515, 533
BmgT120I GGNCC 3 cut(s) 436, 515, 533
BmiI GGNNCC 1 cut(s) 597
BmrFI CCNGG 1 cut(s) 477
BmsI GCATC 2 cut(s) 509, 767
BpiI GAAGAC 1 cut(s) 532
BplI GAGNNNNNCTC 2 cut(s) 545, 577
BpuEI CTTGAG 1 cut(s) 34
BsaBI GATNNNNATC 1 cut(s) 668
BsaI GGTCTC 1 cut(s) 565
BsaJI CCNNGG 1 cut(s) 306
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 3 cut(s) 194, 488, 536
Bse21I CCTNAGG 1 cut(s) 780
Bse8I GATNNNNATC 1 cut(s) 668
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 147
BseJI GATNNNNATC 1 cut(s) 668
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMII CTCAG 3 cut(s) 163, 507, 543
BseNI ACTGG 3 cut(s) 194, 488, 536
BseRI GAGGAG 2 cut(s) 749, 800
BseXI GCAGC 4 cut(s) 247, 418, 781, 790
BseYI CCCAGC 1 cut(s) 410
BshFI GGCC 1 cut(s) 521
BsiSI CCGG 1 cut(s) 518
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 4 cut(s) 31, 496, 532, 565
BsmBI CGTCTC 1 cut(s) 532
BsnI GGCC 1 cut(s) 521
Bso31I GGTCTC 1 cut(s) 565
Bsp143I GATC 4 cut(s) 3, 99, 479, 669
BspACI CCGC 3 cut(s) 400, 434, 593
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 3 cut(s) 162, 506, 542
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 597
BspPI GGATC 1 cut(s) 487
BspQI GCTCTTC 2 cut(s) 447, 741
BspTNI GGTCTC 1 cut(s) 565
BsrBI CCGCTC 1 cut(s) 400
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 3 cut(s) 194, 488, 536
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 4 cut(s) 3, 99, 479, 669
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 477
Bst6I CTCTTC 8 cut(s) 312, 447, 576, 627, 672, 684, 711, 741
BstC8I GCNNGC 3 cut(s) 271, 408, 459
BstDEI CTNAG 5 cut(s) 22, 149, 493, 529, 780
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 4 cut(s) 6, 102, 482, 672
BstMAI GTCTC 4 cut(s) 31, 496, 532, 565
BstMBI GATC 4 cut(s) 3, 99, 479, 669
BstMWI GCNNNNNNNGC 6 cut(s) 260, 266, 371, 800, 803, 812
BstNI CCWGG 1 cut(s) 477
BstSCI CCNGG 1 cut(s) 475
BstV1I GCAGC 4 cut(s) 247, 418, 781, 790
BstV2I GAAGAC 1 cut(s) 532
Bsu36I CCTNAGG 1 cut(s) 780
BsuRI GGCC 1 cut(s) 521
BtsCI GGATG 1 cut(s) 147
Cac8I GCNNGC 3 cut(s) 271, 408, 459
CciI TCATGA 1 cut(s) 96
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 3 cut(s) 436, 515, 533
Csp6I GTAC 1 cut(s) 424
CviAII CATG 3 cut(s) 97, 111, 762
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 5 cut(s) 22, 149, 493, 529, 780
DpnI GATC 4 cut(s) 5, 101, 481, 671
DpnII GATC 4 cut(s) 3, 99, 479, 669
Eam1104I CTCTTC 8 cut(s) 312, 447, 576, 627, 672, 684, 711, 741
EarI CTCTTC 8 cut(s) 312, 447, 576, 627, 672, 684, 711, 741
Eco130I CCWWGG 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 565
Eco47I GGWCC 3 cut(s) 436, 515, 533
Eco57I CTGAAG 3 cut(s) 276, 285, 774
Eco81I CCTNAGG 1 cut(s) 780
EcoRI GAATTC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 475
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 532
FaeI CATG 3 cut(s) 100, 114, 765
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FatI CATG 3 cut(s) 96, 110, 761
FbaI TGATCA 1 cut(s) 99
Fnu4HI GCNGC 4 cut(s) 261, 432, 795, 804
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 4 cut(s) 261, 432, 795, 804
GluI GCNGC 4 cut(s) 261, 432, 795, 804
GsaI CCCAGC 1 cut(s) 414
HaeIII GGCC 1 cut(s) 521
HapII CCGG 1 cut(s) 518
Hin1II CATG 3 cut(s) 100, 114, 765
HindIII AAGCTT 2 cut(s) 267, 363
HinfI GANTC 1 cut(s) 287
HpaII CCGG 1 cut(s) 518
HphI GGTGA 2 cut(s) 715, 779
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 1 cut(s) 496
Hpy188III TCNNGA 4 cut(s) 97, 217, 382, 648
Hpy8I GTNNAC 1 cut(s) 439
HpyAV CCTTC 7 cut(s) 214, 286, 319, 550, 580, 679, 736
HpyCH4IV ACGT 2 cut(s) 525, 566
HpyCH4V TGCA 1 cut(s) 273
HpyF10VI GCNNNNNNNGC 6 cut(s) 260, 266, 371, 800, 803, 812
HpyF3I CTNAG 5 cut(s) 22, 149, 493, 529, 780
HpySE526I ACGT 2 cut(s) 525, 566
Hsp92II CATG 3 cut(s) 100, 114, 765
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 4 cut(s) 3, 99, 479, 669
LguI GCTCTTC 2 cut(s) 447, 741
LmnI GCTCC 3 cut(s) 397, 595, 802
Lsp1109I GCAGC 4 cut(s) 247, 418, 781, 790
LweI GCATC 2 cut(s) 509, 767
MaeII ACGT 2 cut(s) 525, 566
MaeIII GTNAC 2 cut(s) 185, 574
MalI GATC 4 cut(s) 5, 101, 481, 671
MbiI CCGCTC 1 cut(s) 400
MboI GATC 4 cut(s) 3, 99, 479, 669
MluCI AATT 4 cut(s) 37, 90, 172, 353
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 9 cut(s) 379, 628, 685, 694, 712, 727, 763, 778, 781
MseI TTAA 3 cut(s) 11, 36, 393
MspI CCGG 1 cut(s) 518
MspR9I CCNGG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 477
MwoI GCNNNNNNNGC 6 cut(s) 260, 266, 371, 800, 803, 812
NdeII GATC 4 cut(s) 3, 99, 479, 669
NlaIII CATG 3 cut(s) 100, 114, 765
NlaIV GGNNCC 1 cut(s) 597
NmuCI GTSAC 1 cut(s) 574
PagI TCATGA 1 cut(s) 96
PciSI GCTCTTC 2 cut(s) 447, 741
PfoI TCCNGGA 1 cut(s) 475
PkrI GCNGC 4 cut(s) 262, 433, 796, 805
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 475
PspFI CCCAGC 1 cut(s) 410
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 1 cut(s) 597
PspPI GGNCC 3 cut(s) 436, 515, 533
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
SapI GCTCTTC 2 cut(s) 447, 741
SaqAI TTAA 3 cut(s) 11, 36, 393
SatI GCNGC 4 cut(s) 261, 432, 795, 804
Sau3AI GATC 4 cut(s) 3, 99, 479, 669
Sau96I GGNCC 3 cut(s) 436, 515, 533
ScaI AGTACT 1 cut(s) 425
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 477
SfaNI GCATC 2 cut(s) 509, 767
SinI GGWCC 3 cut(s) 436, 515, 533
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 4 cut(s) 37, 90, 172, 353
SsiI CCGC 3 cut(s) 400, 434, 593
SspI AATATT 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 475
StyI CCWWGG 1 cut(s) 306
TaiI ACGT 2 cut(s) 528, 569
TaqI TCGA 3 cut(s) 290, 482, 672
TasI AATT 4 cut(s) 37, 90, 172, 353
TatI WGTACW 1 cut(s) 423
Tru1I TTAA 3 cut(s) 11, 36, 393
Tru9I TTAA 3 cut(s) 11, 36, 393
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 4 cut(s) 260, 431, 794, 803
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 4 cut(s) 30, 85, 99, 375
VpaK11BI GGWCC 3 cut(s) 436, 515, 533
XapI RAATTY 2 cut(s) 90, 172
ZrmI AGTACT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.