pycom05g21880

DREPP plasma membrane polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0003896
Physical Location & Seq
Reverse (-)
24449950 .. 24451052
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g21880.4

Sequence Viewer

Length: 639 bp
ATGGGTTATTGGCAAACAAAGGTGCTTCCAAAGATCAAGAAGGTGTTTGAGACCAAAACCAGTTCAAAAAAGGCTGCTGCTGCCGAGGCTTGCAAGTCCTTTGATGAGTCGAAGGAGGAAATAACCAAGGAGTTTGAAGAGAAGAAGGCTGAGCTTCAACCAAAAGTAATTGAATTATATGAAGCTTCCTCAGCTGAAATCAAGATTTTGGTTAAGGAGCGCAAAGAGTCAGGATTGAAGAAGTACTCAGCAGCAGTCCACAAGTTCCTTGAAGAGTTGGCTAAAATTGAATTCCCAGGATCCAAAACAGTATCAGAAGCCTCTTCAAAATATGGGCCAGCCTATGTTTCAGGTCCAGTTTTCTTTGTGTTCGAGAAGGTCTCAACATTCATTGTGACTGAGGAAACGGTAGAGCCGCTGCCACCGCCAGCAGAAGCAACAAAAACTGTGGAGGAAACAAGTGGTGTTGTAAAAGAAAAGGAGATAGTTATCGAAGAAGAGAAGAAAGAAGAGGTGGTGGTGGAGGAGAAGAAAGAGGAGGAGGTTGAGAAACCTAAACCTACCGAGCCCGAAGCTGCTGCTGAGGCTCCTCCTCCAAAGGTGGAGGAATCTGCTGCTGCAGAACCACCAAAGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0001101 GO:0001558 GO:0002237 GO:0003674 GO:0005488 GO:0005507 GO:0005509 GO:0005515 GO:0005516 GO:0005543 GO:0005546 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005911 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010118 GO:0010350 GO:0010555 GO:0010638 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016032 GO:0016043 GO:0018377 GO:0019058 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0030308 GO:0030865 GO:0031110 GO:0031111 GO:0031112 GO:0031113 GO:0031114 GO:0031115 GO:0031117 GO:0031122 GO:0031224 GO:0031225 GO:0031226 GO:0031333 GO:0031365 GO:0031667 GO:0031668 GO:0031669 GO:0032026 GO:0032271 GO:0032272 GO:0032886 GO:0033043 GO:0033554 GO:0034645 GO:0035091 GO:0035864 GO:0035865 GO:0036211 GO:0040008 GO:0042157 GO:0042158 GO:0042221 GO:0042594 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043243 GO:0043244 GO:0043254 GO:0043325 GO:0043412 GO:0043543 GO:0043622 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044766 GO:0045926 GO:0046658 GO:0046688 GO:0046794 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051494 GO:0051495 GO:0051510 GO:0051511 GO:0051592 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070507 GO:0070887 GO:0071214 GO:0071216 GO:0071219 GO:0071241 GO:0071248 GO:0071280 GO:0071281 GO:0071286 GO:0071310 GO:0071322 GO:0071325 GO:0071470 GO:0071472 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072708 GO:0072709 GO:0075733 GO:0080025 GO:0090332 GO:0097435 GO:0098542 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0104004 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1901879 GO:1901881 GO:1901981 GO:1902579 GO:1902903 GO:1902904 GO:1902905 GO:1902936
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DREPP

Protein Analysis

213

Amino Acids

23.55

Weight (kDa)

5.04

Isoelectric Point (pI)

59.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 416, 425
AclWI GGATC 2 cut(s) 294, 307
AcsI RAATTY 1 cut(s) 290
AfaI GTAC 1 cut(s) 245
AgsI TTSAA 8 cut(s) 66, 137, 158, 173, 238, 272, 290, 327
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 4 cut(s) 154, 185, 194, 575
AluI AGCT 4 cut(s) 154, 185, 194, 575
Alw26I GTCTC 2 cut(s) 44, 385
AlwI GGATC 2 cut(s) 294, 307
AoxI GGCC 1 cut(s) 335
ApeKI GCWGC 9 cut(s) 74, 77, 80, 251, 418, 575, 578, 614, 617
ApoI RAATTY 1 cut(s) 290
AspLEI GCGC 1 cut(s) 222
AspS9I GGNCC 2 cut(s) 335, 353
AvaII GGWCC 1 cut(s) 353
BamHI GGATCC 1 cut(s) 299
BanII GRGCYC 1 cut(s) 570
BbvCI CCTCAGC 2 cut(s) 190, 582
BbvI GCAGC 9 cut(s) 61, 64, 67, 263, 405, 562, 565, 601, 604
BcgI CGANNNNNNTGC 2 cut(s) 560, 594
BciT130I CCWGG 1 cut(s) 297
BcoDI GTCTC 2 cut(s) 44, 385
BfmI CTRYAG 1 cut(s) 618
BlpI GCTNAGC 1 cut(s) 150
BmcAI AGTACT 1 cut(s) 245
Bme1390I CCNGG 1 cut(s) 297
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 2 cut(s) 335, 353
BmiI GGNNCC 2 cut(s) 301, 588
BmrFI CCNGG 1 cut(s) 297
BplI GAGNNNNNCTC 2 cut(s) 365, 397
Bpu10I CCTNAGC 2 cut(s) 190, 582
Bpu1102I GCTNAGC 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 488
BsaI GGTCTC 2 cut(s) 44, 385
BsaJI CCNNGG 3 cut(s) 84, 126, 295
Bse1I ACTGG 2 cut(s) 60, 356
Bse8I GATNNNNATC 1 cut(s) 488
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 3 cut(s) 84, 126, 295
BseJI GATNNNNATC 1 cut(s) 488
BseMII CTCAG 5 cut(s) 141, 204, 261, 390, 573
BseNI ACTGG 2 cut(s) 60, 356
BseRI GAGGAG 5 cut(s) 539, 551, 554, 579, 582
BseXI GCAGC 9 cut(s) 61, 64, 67, 263, 405, 562, 565, 601, 604
BshFI GGCC 1 cut(s) 337
BsmAI GTCTC 2 cut(s) 44, 385
BsnI GGCC 1 cut(s) 337
Bso31I GGTCTC 2 cut(s) 44, 385
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 2 cut(s) 33, 299
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 2 cut(s) 416, 425
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 5 cut(s) 142, 203, 260, 391, 574
BspLI GGNNCC 2 cut(s) 301, 588
BspMAI CTGCAG 1 cut(s) 622
BspPI GGATC 2 cut(s) 294, 307
BspTNI GGTCTC 2 cut(s) 44, 385
BsrI ACTGG 2 cut(s) 60, 356
BssECI CCNNGG 3 cut(s) 84, 126, 295
BssMI GATC 2 cut(s) 33, 299
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 3 cut(s) 310, 409, 448
Bst6I CTCTTC 5 cut(s) 132, 267, 328, 492, 504
BstC8I GCNNGC 3 cut(s) 91, 339, 429
BstDEI CTNAG 6 cut(s) 150, 190, 247, 399, 582, 636
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 2 cut(s) 36, 302
BstMAI GTCTC 2 cut(s) 44, 385
BstMBI GATC 2 cut(s) 33, 299
BstMWI GCNNNNNNNGC 5 cut(s) 80, 86, 191, 424, 584
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 295
BstSFI CTRYAG 1 cut(s) 618
BstV1I GCAGC 9 cut(s) 61, 64, 67, 263, 405, 562, 565, 601, 604
BstX2I RGATCY 1 cut(s) 299
BstYI RGATCY 1 cut(s) 299
BsuRI GGCC 1 cut(s) 337
Cac8I GCNNGC 3 cut(s) 91, 339, 429
CfoI GCGC 1 cut(s) 222
Cfr13I GGNCC 2 cut(s) 335, 353
Csp6I GTAC 1 cut(s) 244
CspCI CAANNNNNGTGG 2 cut(s) 429, 464
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 6 cut(s) 150, 190, 247, 399, 582, 636
DpnI GATC 2 cut(s) 35, 301
DpnII GATC 2 cut(s) 33, 299
Eam1104I CTCTTC 5 cut(s) 132, 267, 328, 492, 504
EarI CTCTTC 5 cut(s) 132, 267, 328, 492, 504
Eco130I CCWWGG 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 570
Eco31I GGTCTC 2 cut(s) 44, 385
Eco47I GGWCC 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 126
FaiI YATR 4 cut(s) 178, 180, 333, 345
FriOI GRGCYC 1 cut(s) 570
GlaI GCGC 1 cut(s) 221
HaeIII GGCC 1 cut(s) 337
HhaI GCGC 1 cut(s) 222
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 3 cut(s) 107, 227, 608
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 4 cut(s) 37, 202, 231, 373
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 4 cut(s) 34, 106, 139, 370
HpyCH4III ACNGT 3 cut(s) 310, 409, 448
HpyCH4V TGCA 2 cut(s) 93, 620
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 86, 191, 424, 584
HpyF3I CTNAG 6 cut(s) 150, 190, 247, 399, 582, 636
HspAI GCGC 1 cut(s) 220
Kzo9I GATC 2 cut(s) 33, 299
LmnI GCTCC 2 cut(s) 217, 592
LpnPI CCDG 8 cut(s) 73, 216, 282, 309, 336, 351, 369, 441
Lsp1109I GCAGC 9 cut(s) 61, 64, 67, 263, 405, 562, 565, 601, 604
MaeIII GTNAC 1 cut(s) 394
MalI GATC 2 cut(s) 35, 301
MboI GATC 2 cut(s) 33, 299
MflI RGATCY 1 cut(s) 299
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 4 cut(s) 168, 173, 285, 290
MlyI GAGTC 2 cut(s) 116, 236
MseI TTAA 1 cut(s) 213
MspA1I CMGCKG 2 cut(s) 194, 418
MspR9I CCNGG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 297
MwoI GCNNNNNNNGC 5 cut(s) 80, 86, 191, 424, 584
NdeII GATC 2 cut(s) 33, 299
NlaIV GGNNCC 2 cut(s) 301, 588
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 394
PfeI GAWTC 1 cut(s) 608
PleI GAGTC 2 cut(s) 115, 235
PpsI GAGTC 2 cut(s) 115, 235
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 2 cut(s) 301, 588
PspPI GGNCC 2 cut(s) 335, 353
PstI CTGCAG 1 cut(s) 622
PsuI RGATCY 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SaqAI TTAA 1 cut(s) 213
Sau3AI GATC 2 cut(s) 33, 299
Sau96I GGNCC 2 cut(s) 335, 353
ScaI AGTACT 1 cut(s) 245
SchI GAGTC 2 cut(s) 116, 236
ScrFI CCNGG 1 cut(s) 297
SduI GDGCHC 1 cut(s) 570
SfcI CTRYAG 1 cut(s) 618
SinI GGWCC 1 cut(s) 353
Sse9I AATT 4 cut(s) 168, 173, 285, 290
SsiI CCGC 2 cut(s) 416, 425
StyD4I CCNGG 1 cut(s) 295
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 3 cut(s) 310, 409, 448
TaqI TCGA 3 cut(s) 110, 372, 492
TasI AATT 4 cut(s) 168, 173, 285, 290
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 418
TfiI GAWTC 1 cut(s) 608
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 9 cut(s) 74, 77, 80, 251, 418, 575, 578, 614, 617
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 2 cut(s) 195, 379
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 1 cut(s) 290
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.