RLG00000032642

DREPP plasma membrane polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003896
Physical Location & Seq
Forward (+)
17266836 .. 17268954
2119 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032642

Sequence Viewer

Length: 849 bp
ATGGCATTTTGTCCTTCTCATGGGGTCATGGTTTTAGAAAACTACGGCTCATGTCACATACACTATTTGGCTGCTACAGCAATACTTCATATTGAGATAGATTTTGATAGTTCTGATTGCACTCTTCAACAAACAGAGAGAGATCAGAAGGAGATCGAAAGGGACATACAACTAAGGGTATTTGAGTTTGAGAAGAATTCAAAGATGGGTTACTGGAAAACAAAGGTGCTGCCCACAATCAAGAAGGTGTTTGAGAACAAGGGCAGTATCAAAAAGGCTGAAGCTGCTGAAGCTTGCAAGACCTTTGATGAGTCGAAGGAGAGTTATGCCAAGGAGTTTGAAGAGAAGAAGGCTGAGTATCAAGTAAAAGTAGTTGAATTATATGAAGCTTCCTCTGCTGAAATCAAGACTTTGATTAAGGAGCGGAAGCTGGCTGCGTTGAAGAAGTACTCTGCTGCAGTCCACAAGTTCCTTGAAGAGCTTGCCAAGATAGAATTTCCAGGATCGAAACCAGTCTCAGAAGCATCATCAAAGTATGGACCGGCCTACGTCTCAGGTCCAGTCTTCTTTGTGTTTGAGAAGGTCTCAACGTATATTGTGACAGAAGAGAAGGTAGCGGAGCCAACGCCACCAGAACCAACACCAGCTAAAGCCGAAGAGGAAACAAGTTCCGGAAAAGAAAAGGAGATAGAGATCGAAGAAGAGAAAAAGGAAGAGGTTGTAGAGGTAAAGAAAGAAGAAGAGGTGGTGGAGGTGGAGGAGAAGAAGGAAGAACCTGAAGCATCATGCGCTGAGGAAAAGCCTAAGGTGGAAGAAGCTGCTCCTGCTGCTGAACCTGCAAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0001101 GO:0001558 GO:0002237 GO:0003674 GO:0005488 GO:0005507 GO:0005509 GO:0005515 GO:0005516 GO:0005543 GO:0005546 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005911 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010118 GO:0010350 GO:0010555 GO:0010638 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016032 GO:0016043 GO:0018377 GO:0019058 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0030308 GO:0030865 GO:0031110 GO:0031111 GO:0031112 GO:0031113 GO:0031114 GO:0031115 GO:0031117 GO:0031122 GO:0031224 GO:0031225 GO:0031226 GO:0031333 GO:0031365 GO:0031667 GO:0031668 GO:0031669 GO:0032026 GO:0032271 GO:0032272 GO:0032886 GO:0033043 GO:0033554 GO:0034645 GO:0035091 GO:0035864 GO:0035865 GO:0036211 GO:0040008 GO:0042157 GO:0042158 GO:0042221 GO:0042594 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043243 GO:0043244 GO:0043254 GO:0043325 GO:0043412 GO:0043543 GO:0043622 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044766 GO:0045926 GO:0046658 GO:0046688 GO:0046794 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051494 GO:0051495 GO:0051510 GO:0051511 GO:0051592 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070507 GO:0070887 GO:0071214 GO:0071216 GO:0071219 GO:0071241 GO:0071248 GO:0071280 GO:0071281 GO:0071286 GO:0071310 GO:0071322 GO:0071325 GO:0071470 GO:0071472 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072708 GO:0072709 GO:0075733 GO:0080025 GO:0090332 GO:0097435 GO:0098542 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0104004 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1901879 GO:1901881 GO:1901981 GO:1902579 GO:1902903 GO:1902904 GO:1902905 GO:1902936
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DREPP

Protein Analysis

283

Amino Acids

31.84

Weight (kDa)

4.97

Isoelectric Point (pI)

67.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DREPP PF05558 69 - 276 1.6e-73 DREPP plasma membrane polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 844
AccBSI CCGCTC 1 cut(s) 424
AccIII TCCGGA 1 cut(s) 671
AciI CCGC 2 cut(s) 424, 617
AclWI GGATC 1 cut(s) 511
AcsI RAATTY 2 cut(s) 196, 494
AcuI CTGAAG 3 cut(s) 300, 309, 798
AfaI GTAC 1 cut(s) 449
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 6 cut(s) 128, 201, 341, 377, 442, 476
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 7 cut(s) 284, 293, 389, 430, 481, 647, 818
AluI AGCT 7 cut(s) 284, 293, 389, 430, 481, 647, 818
Alw26I GTCTC 3 cut(s) 520, 556, 589
AlwI GGATC 1 cut(s) 511
Aor13HI TCCGGA 1 cut(s) 671
AoxI GGCC 1 cut(s) 543
ApeKI GCWGC 7 cut(s) 71, 229, 284, 434, 455, 818, 827
ApoI RAATTY 2 cut(s) 196, 494
AspLEI GCGC 1 cut(s) 791
AspS9I GGNCC 2 cut(s) 539, 557
AvaII GGWCC 2 cut(s) 539, 557
AxyI CCTNAGG 1 cut(s) 804
BbsI GAAGAC 1 cut(s) 556
BbvCI CCTCAGC 1 cut(s) 792
BbvI GCAGC 7 cut(s) 58, 216, 271, 421, 442, 805, 814
BccI CCATC 1 cut(s) 199
BceAI ACGGC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 501
BcoDI GTCTC 3 cut(s) 520, 556, 589
BfmI CTRYAG 2 cut(s) 75, 456
BfuAI ACCTGC 1 cut(s) 844
BisI GCNGC 7 cut(s) 72, 230, 285, 435, 456, 819, 828
BlsI GCNGC 7 cut(s) 73, 231, 286, 436, 457, 820, 829
BmcAI AGTACT 1 cut(s) 449
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 2 cut(s) 539, 557
BmgT120I GGNCC 2 cut(s) 539, 557
BmiI GGNNCC 1 cut(s) 621
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 2 cut(s) 533, 791
BpiI GAAGAC 1 cut(s) 556
BplI GAGNNNNNCTC 2 cut(s) 569, 601
Bpu10I CCTNAGC 1 cut(s) 792
BsaBI GATNNNNATC 1 cut(s) 692
BsaI GGTCTC 1 cut(s) 589
BsaJI CCNNGG 1 cut(s) 330
BsaWI WCCGGW 1 cut(s) 671
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse118I RCCGGY 1 cut(s) 541
Bse1I ACTGG 3 cut(s) 218, 512, 560
Bse21I CCTNAGG 1 cut(s) 804
Bse8I GATNNNNATC 1 cut(s) 692
BseAI TCCGGA 1 cut(s) 671
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 330
BseJI GATNNNNATC 1 cut(s) 692
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 4 cut(s) 345, 531, 567, 783
BseNI ACTGG 3 cut(s) 218, 512, 560
BseRI GAGGAG 1 cut(s) 773
BseXI GCAGC 7 cut(s) 58, 216, 271, 421, 442, 805, 814
BshFI GGCC 1 cut(s) 545
BsiSI CCGG 2 cut(s) 542, 672
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 3 cut(s) 520, 556, 589
BsmBI CGTCTC 1 cut(s) 556
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 1 cut(s) 545
Bso31I GGTCTC 1 cut(s) 589
Bsp13I TCCGGA 1 cut(s) 671
Bsp143I GATC 4 cut(s) 142, 153, 503, 693
BspACI CCGC 2 cut(s) 424, 617
BspANI GGCC 1 cut(s) 545
BspCNI CTCAG 4 cut(s) 346, 530, 566, 784
BspEI TCCGGA 1 cut(s) 671
BspLI GGNNCC 1 cut(s) 621
BspMAI CTGCAG 1 cut(s) 460
BspMI ACCTGC 1 cut(s) 844
BspPI GGATC 1 cut(s) 511
BspQI GCTCTTC 1 cut(s) 471
BspTNI GGTCTC 1 cut(s) 589
BsrBI CCGCTC 1 cut(s) 424
BsrFI RCCGGY 1 cut(s) 541
BsrI ACTGG 3 cut(s) 218, 512, 560
BssAI RCCGGY 1 cut(s) 541
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 4 cut(s) 142, 153, 503, 693
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 501
Bst6I CTCTTC 8 cut(s) 129, 336, 471, 600, 651, 696, 708, 735
BstC8I GCNNGC 3 cut(s) 295, 432, 483
BstDEI CTNAG 6 cut(s) 173, 354, 517, 553, 792, 804
BstHHI GCGC 1 cut(s) 791
BstKTI GATC 4 cut(s) 145, 156, 506, 696
BstMAI GTCTC 3 cut(s) 520, 556, 589
BstMBI GATC 4 cut(s) 142, 153, 503, 693
BstMWI GCNNNNNNNGC 8 cut(s) 77, 284, 290, 395, 788, 824, 827, 836
BstNI CCWGG 1 cut(s) 501
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 2 cut(s) 75, 456
BstV1I GCAGC 7 cut(s) 58, 216, 271, 421, 442, 805, 814
BstV2I GAAGAC 1 cut(s) 556
Bsu36I CCTNAGG 1 cut(s) 804
BsuRI GGCC 1 cut(s) 545
BveI ACCTGC 1 cut(s) 844
Cac8I GCNNGC 3 cut(s) 295, 432, 483
CfoI GCGC 1 cut(s) 791
Cfr10I RCCGGY 1 cut(s) 541
Cfr13I GGNCC 2 cut(s) 539, 557
Csp6I GTAC 1 cut(s) 448
CviAII CATG 4 cut(s) 20, 28, 51, 786
CviQI GTAC 1 cut(s) 448
DdeI CTNAG 6 cut(s) 173, 354, 517, 553, 792, 804
DpnI GATC 4 cut(s) 144, 155, 505, 695
DpnII GATC 4 cut(s) 142, 153, 503, 693
Eam1104I CTCTTC 8 cut(s) 129, 336, 471, 600, 651, 696, 708, 735
EarI CTCTTC 8 cut(s) 129, 336, 471, 600, 651, 696, 708, 735
Eco130I CCWWGG 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 589
Eco47I GGWCC 2 cut(s) 539, 557
Eco57I CTGAAG 3 cut(s) 300, 309, 798
Eco81I CCTNAGG 1 cut(s) 804
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 499
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
Esp3I CGTCTC 1 cut(s) 556
FaeI CATG 4 cut(s) 23, 31, 54, 789
FaqI GGGAC 1 cut(s) 176
FatI CATG 4 cut(s) 19, 27, 50, 785
Fnu4HI GCNGC 7 cut(s) 72, 230, 285, 435, 456, 819, 828
Fsp4HI GCNGC 7 cut(s) 72, 230, 285, 435, 456, 819, 828
GlaI GCGC 1 cut(s) 790
GluI GCNGC 7 cut(s) 72, 230, 285, 435, 456, 819, 828
HaeIII GGCC 1 cut(s) 545
HapII CCGG 2 cut(s) 542, 672
HhaI GCGC 1 cut(s) 791
Hin1II CATG 4 cut(s) 23, 31, 54, 789
Hin6I GCGC 1 cut(s) 789
HinP1I GCGC 1 cut(s) 789
HindIII AAGCTT 2 cut(s) 291, 387
HinfI GANTC 1 cut(s) 311
HpaII CCGG 2 cut(s) 542, 672
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 3 cut(s) 115, 147, 520
Hpy188III TCNNGA 3 cut(s) 241, 406, 672
Hpy8I GTNNAC 1 cut(s) 463
HpyAV CCTTC 8 cut(s) 24, 142, 238, 310, 343, 574, 604, 760
HpyCH4IV ACGT 2 cut(s) 549, 590
HpyCH4V TGCA 4 cut(s) 120, 297, 458, 839
HpyF10VI GCNNNNNNNGC 8 cut(s) 77, 284, 290, 395, 788, 824, 827, 836
HpyF3I CTNAG 6 cut(s) 173, 354, 517, 553, 792, 804
HpySE526I ACGT 2 cut(s) 549, 590
Hsp92II CATG 4 cut(s) 23, 31, 54, 789
HspAI GCGC 1 cut(s) 789
Kpn2I TCCGGA 1 cut(s) 671
Kzo9I GATC 4 cut(s) 142, 153, 503, 693
LguI GCTCTTC 1 cut(s) 471
LmnI GCTCC 3 cut(s) 421, 619, 826
Lsp1109I GCAGC 7 cut(s) 58, 216, 271, 421, 442, 805, 814
LweI GCATC 2 cut(s) 533, 791
MaeII ACGT 2 cut(s) 549, 590
MaeIII GTNAC 3 cut(s) 53, 209, 598
MalI GATC 4 cut(s) 144, 155, 505, 695
MbiI CCGCTC 1 cut(s) 424
MboI GATC 4 cut(s) 142, 153, 503, 693
MluCI AATT 3 cut(s) 196, 377, 494
MlyI GAGTC 1 cut(s) 320
MnlI CCTC 8 cut(s) 403, 652, 709, 718, 736, 745, 751, 787
MroI TCCGGA 1 cut(s) 671
MseI TTAA 1 cut(s) 417
MspI CCGG 2 cut(s) 542, 672
MspR9I CCNGG 1 cut(s) 501
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 8 cut(s) 77, 284, 290, 395, 788, 824, 827, 836
NdeII GATC 4 cut(s) 142, 153, 503, 693
NlaIII CATG 4 cut(s) 23, 31, 54, 789
NlaIV GGNNCC 1 cut(s) 621
NmuCI GTSAC 2 cut(s) 53, 598
PciSI GCTCTTC 1 cut(s) 471
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 7 cut(s) 73, 231, 286, 436, 457, 820, 829
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 1 cut(s) 621
PspPI GGNCC 2 cut(s) 539, 557
PstI CTGCAG 1 cut(s) 460
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
SapI GCTCTTC 1 cut(s) 471
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 7 cut(s) 72, 230, 285, 435, 456, 819, 828
Sau3AI GATC 4 cut(s) 142, 153, 503, 693
Sau96I GGNCC 2 cut(s) 539, 557
ScaI AGTACT 1 cut(s) 449
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 1 cut(s) 501
SfaNI GCATC 2 cut(s) 533, 791
SfcI CTRYAG 2 cut(s) 75, 456
SinI GGWCC 2 cut(s) 539, 557
Sse9I AATT 3 cut(s) 196, 377, 494
SsiI CCGC 2 cut(s) 424, 617
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 1 cut(s) 330
TaiI ACGT 2 cut(s) 552, 593
TaqI TCGA 4 cut(s) 156, 314, 506, 696
TasI AATT 3 cut(s) 196, 377, 494
TatI WGTACW 1 cut(s) 447
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TseFI GTSAC 2 cut(s) 53, 598
TseI GCWGC 7 cut(s) 71, 229, 284, 434, 455, 818, 827
Tsp45I GTSAC 2 cut(s) 53, 598
TspDTI ATGAA 2 cut(s) 77, 399
VpaK11BI GGWCC 2 cut(s) 539, 557
XapI RAATTY 2 cut(s) 196, 494
ZrmI AGTACT 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.