Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008536

Physical Location & Seq

Genomic Coordinates Reverse (-)

11013839 .. 11016590

Gene Structure 2752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTCTTCGGATCCTGACAAAATGATGTCCAAAGCCGACAAAATGACAAAGCTCACGCTTACTAGATGGAGTGCTGATTGGAGAGGTGCTACTGAGTTGTATGAGCAAGCAGCAAATGGGTTTAGAGCATCAAACAAATATGAGAAAGCTAAAGTGGCTCTCGAGAAAGCTTCAAAAGGACAAGAGATGCAAGCTTCTCCTTGGGATGCTGCAAAGCATATGGAGTCTGCTGCTGCCTTAGCACAGAAGCTAAGTATTTGGAATGAAGTTGCTGATTTTTATAGAAAGGCGTCGGAGCTGTATGTTGAGTGTGGAAGGGCACAACCCGCATCAGATGCTCTTGGAAAGGCTGCCCGTGCTTTGGAAGATGTCAAACCAGATGACGCCATCCAACTATACACTGATGCTTGTGAAATTCTTGAAGAGGATGGGAGGGACCAAATGGCCTTTGATCTGTACCGTGCTTGTGCTAATGTCTACATTAAGCTTGAGAAGTTCACAGATGCTGCAACCTTTTTCTTAAGATTGGGTGTAGCTGCTGATAAGTGTGATGCGACAAATAGCCAGTGTAAGGCCTATCTCAGTGCAATCATCTTATATCTGTATGCTCACGACCTGCAGCAGGCAGAAAAATGCTACAATGACTGTTCTCAGATTGATGCCTTTCTGAAGAGTGATCAGAGCCGAAGTGCTAGTAGACTTCTCACCGCCTATAATGAAGGTGACATTGAAGAAATCAAGAAGGTGGCGAGTGCAAGCACTGTCTCGAATTTGGATCATATGATTATCAAGTTGGCTAGGAAGCTACCCACTGGAGATGTTACTGCAATTCAGATGAACACTAATGACGATCTAGACGAGGATGATCTCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019905 GO:0031090 GO:0031201 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNAP

Protein Analysis

291

Amino Acids

32.36

Weight (kDa)

4.86

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	4 - 264	4.9e-25	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20410 AT4G20410
fragaria_vesca	FvH4_3g11520 FvH4_3g11520 FvH4_3g11520
malus_domestica	MD00G1097300.v1.1
prunus_persica	Prupe.4G102500_v2.0.a1 Prupe.4G102500_v2.0.a1
pyrus_communis	pycom05g24690 pycom10g20160
rosa_chinensis	RchiOBHm_Chr5g0018471
rosa_laevigata	RLG00000032368
rosa_multiflora	Rmu_sc0004464.1_g000015
rosa_roxburghii	Rroxscaffold_1G00059260
rosa_rugosa	Rorug05G0044300
rosa_samantha	Rh5AG135700 Rh5BG134400 Rh5CG146500 Rh5DG135600
rosa_wichuraiana	Rw5G011870 Rw5G011910 Rw5G011990 Rw5G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	624
AccI	GTMKAC	2 cut(s)	477, 697
AciI	CCGC	2 cut(s)	327, 708
AclWI	GGATC	3 cut(s)	5, 18, 783
AcsI	RAATTY	2 cut(s)	414, 769
AcuI	CTGAAG	1 cut(s)	689
AcyI	GRCGYC	2 cut(s)	290, 384
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	3 cut(s)	361, 571, 622
AflII	CTTAAG	1 cut(s)	520
AgsI	TTSAA	3 cut(s)	174, 422, 731
AluBI	AGCT	9 cut(s)	52, 149, 170, 194, 250, 298, 487, 536, 805
AluI	AGCT	9 cut(s)	52, 149, 170, 194, 250, 298, 487, 536, 805
Alw26I	GTCTC	1 cut(s)	769
AlwI	GGATC	3 cut(s)	5, 18, 783
AlwNI	CAGNNNCTG	1 cut(s)	506
Ama87I	CYCGRG	1 cut(s)	161
AoxI	GGCC	2 cut(s)	444, 573
ApeKI	GCWGC	8 cut(s)	110, 209, 230, 233, 350, 506, 536, 619
ApoI	RAATTY	2 cut(s)	414, 769
AspS9I	GGNCC	1 cut(s)	436
AsuHPI	GGTGA	2 cut(s)	697, 734
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	322
BamHI	GGATCC	1 cut(s)	10
BbvI	GCAGC	8 cut(s)	122, 196, 217, 220, 337, 493, 523, 631
BccI	CCATC	3 cut(s)	60, 395, 422
BclI	TGATCA	1 cut(s)	676
BcoDI	GTCTC	1 cut(s)	769
BfaI	CTAG	4 cut(s)	63, 693, 798, 854
BfmI	CTRYAG	1 cut(s)	617
BfrI	CTTAAG	1 cut(s)	520
BfuAI	ACCTGC	1 cut(s)	624
BisI	GCNGC	8 cut(s)	111, 210, 231, 234, 351, 507, 537, 620
BlsI	GCNGC	8 cut(s)	112, 211, 232, 235, 352, 508, 538, 621
Bme18I	GGWCC	1 cut(s)	436
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	2 cut(s)	12, 437
BmsI	GCATC	9 cut(s)	137, 177, 196, 325, 338, 394, 493, 541, 649
BpmI	CTGGAG	1 cut(s)	834
Bpu10I	CCTNAGC	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	509
BsaHI	GRCGYC	2 cut(s)	290, 384
BsaJI	CCNNGG	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	3 cut(s)	361, 571, 622
Bse1I	ACTGG	2 cut(s)	565, 817
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	4 cut(s)	211, 387, 433, 868
BseLI	CCNNNNNNNGG	3 cut(s)	361, 571, 622
BseMII	CTCAG	3 cut(s)	84, 595, 665
BseNI	ACTGG	2 cut(s)	565, 817
BseSI	GKGCMC	1 cut(s)	322
BseXI	GCAGC	8 cut(s)	122, 196, 217, 220, 337, 493, 523, 631
BshFI	GGCC	2 cut(s)	446, 575
BsiHKCI	CYCGRG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	3 cut(s)	361, 571, 622
BsmAI	GTCTC	1 cut(s)	769
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	2 cut(s)	446, 575
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	6 cut(s)	10, 451, 676, 775, 850, 865
BspACI	CCGC	2 cut(s)	327, 708
BspANI	GGCC	2 cut(s)	446, 575
BspCNI	CTCAG	3 cut(s)	85, 594, 664
BspLI	GGNNCC	2 cut(s)	12, 437
BspMAI	CTGCAG	1 cut(s)	621
BspMI	ACCTGC	1 cut(s)	624
BspPI	GGATC	3 cut(s)	5, 18, 783
BspTI	CTTAAG	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	565, 817
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	6 cut(s)	10, 451, 676, 775, 850, 865
BssNI	GRCGYC	2 cut(s)	290, 384
BssT1I	CCWWGG	1 cut(s)	200
Bst4CI	ACNGT	3 cut(s)	461, 647, 763
Bst6I	CTCTTC	2 cut(s)	417, 665
BstACI	GRCGYC	2 cut(s)	290, 384
BstAFI	CTTAAG	1 cut(s)	520
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstC8I	GCNNGC	4 cut(s)	108, 192, 624, 757
BstDEI	CTNAG	5 cut(s)	93, 238, 251, 581, 651
BstENI	CCTNNNNNAGG	1 cut(s)	620
BstF5I	GGATG	4 cut(s)	211, 387, 433, 868
BstKTI	GATC	6 cut(s)	13, 454, 679, 778, 853, 868
BstMAI	GTCTC	1 cut(s)	769
BstMBI	GATC	6 cut(s)	10, 451, 676, 775, 850, 865
BstMWI	GCNNNNNNNGC	5 cut(s)	155, 239, 326, 335, 356
BstSFI	CTRYAG	1 cut(s)	617
BstSLI	GKGCMC	1 cut(s)	322
BstV1I	GCAGC	8 cut(s)	122, 196, 217, 220, 337, 493, 523, 631
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuRI	GGCC	2 cut(s)	446, 575
BtsCI	GGATG	4 cut(s)	211, 387, 433, 868
BtsIMutI	CAGTG	5 cut(s)	399, 572, 589, 759, 810
BveI	ACCTGC	1 cut(s)	624
Cac8I	GCNNGC	4 cut(s)	108, 192, 624, 757
CaiI	CAGNNNCTG	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	436
CseI	GACGC	2 cut(s)	279, 392
Csp6I	GTAC	1 cut(s)	457
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	5 cut(s)	93, 238, 251, 581, 651
DpnI	GATC	6 cut(s)	12, 453, 678, 777, 852, 867
DpnII	GATC	6 cut(s)	10, 451, 676, 775, 850, 865
Eam1104I	CTCTTC	2 cut(s)	417, 665
EarI	CTCTTC	2 cut(s)	417, 665
Eco130I	CCWWGG	1 cut(s)	200
Eco147I	AGGCCT	1 cut(s)	575
Eco47I	GGWCC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	689
Eco88I	CYCGRG	1 cut(s)	161
EcoNI	CCTNNNNNAGG	1 cut(s)	620
EcoT14I	CCWWGG	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	200
FaqI	GGGAC	1 cut(s)	449
FauI	CCCGC	1 cut(s)	334
FauNDI	CATATG	2 cut(s)	219, 780
FbaI	TGATCA	1 cut(s)	676
FblI	GTMKAC	2 cut(s)	477, 697
Fnu4HI	GCNGC	8 cut(s)	111, 210, 231, 234, 351, 507, 537, 620
FokI	GGATG	3 cut(s)	218, 374, 440
Fsp4HI	GCNGC	8 cut(s)	111, 210, 231, 234, 351, 507, 537, 620
FspBI	CTAG	4 cut(s)	63, 693, 798, 854
GluI	GCNGC	8 cut(s)	111, 210, 231, 234, 351, 507, 537, 620
GsuI	CTGGAG	1 cut(s)	834
HaeIII	GGCC	2 cut(s)	446, 575
HgaI	GACGC	2 cut(s)	279, 392
Hin1I	GRCGYC	2 cut(s)	290, 384
HindIII	AAGCTT	3 cut(s)	168, 192, 485
HinfI	GANTC	1 cut(s)	224
HphI	GGTGA	2 cut(s)	697, 734
Hpy166II	GTNNAC	3 cut(s)	478, 498, 698
Hpy188I	TCNGA	7 cut(s)	10, 295, 334, 654, 669, 681, 834
Hpy188III	TCNNGA	8 cut(s)	14, 161, 163, 419, 611, 739, 766, 854
Hpy8I	GTNNAC	3 cut(s)	478, 498, 698
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	3 cut(s)	309, 713, 736
HpyCH4III	ACNGT	3 cut(s)	461, 647, 763
HpyCH4V	TGCA	7 cut(s)	190, 212, 509, 587, 619, 755, 827
HpyF10VI	GCNNNNNNNGC	5 cut(s)	155, 239, 326, 335, 356
HpyF3I	CTNAG	5 cut(s)	93, 238, 251, 581, 651
Hsp92I	GRCGYC	2 cut(s)	290, 384
Ksp22I	TGATCA	1 cut(s)	676
Kzo9I	GATC	6 cut(s)	10, 451, 676, 775, 850, 865
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	6 cut(s)	27, 390, 578, 608, 629, 798
Lsp1109I	GCAGC	8 cut(s)	122, 196, 217, 220, 337, 493, 523, 631
LweI	GCATC	9 cut(s)	137, 177, 196, 325, 338, 394, 493, 541, 649
MaeI	CTAG	4 cut(s)	63, 693, 798, 854
MaeIII	GTNAC	2 cut(s)	722, 820
MalI	GATC	6 cut(s)	12, 453, 678, 777, 852, 867
MboI	GATC	6 cut(s)	10, 451, 676, 775, 850, 865
MboII	GAAGA	4 cut(s)	377, 434, 682, 743
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	3 cut(s)	414, 769, 828
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	2 cut(s)	273, 415
MnlI	CCTC	4 cut(s)	77, 418, 426, 853
MseI	TTAA	3 cut(s)	483, 521, 874
MspCI	CTTAAG	1 cut(s)	520
MwoI	GCNNNNNNNGC	5 cut(s)	155, 239, 326, 335, 356
NdeI	CATATG	2 cut(s)	219, 780
NdeII	GATC	6 cut(s)	10, 451, 676, 775, 850, 865
NlaIV	GGNNCC	2 cut(s)	12, 437
NmuCI	GTSAC	1 cut(s)	722
PaeR7I	CTCGAG	1 cut(s)	161
PceI	AGGCCT	1 cut(s)	575
PcsI	WCGNNNNNNNCGW	1 cut(s)	855
PkrI	GCNGC	8 cut(s)	112, 211, 232, 235, 352, 508, 538, 621
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	12, 437
PspPI	GGNCC	1 cut(s)	436
PstI	CTGCAG	1 cut(s)	621
PstNI	CAGNNNCTG	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SaqAI	TTAA	3 cut(s)	483, 521, 874
SatI	GCNGC	8 cut(s)	111, 210, 231, 234, 351, 507, 537, 620
Sau3AI	GATC	6 cut(s)	10, 451, 676, 775, 850, 865
Sau96I	GGNCC	1 cut(s)	436
SchI	GAGTC	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	322
SfaNI	GCATC	9 cut(s)	137, 177, 196, 325, 338, 394, 493, 541, 649
SfcI	CTRYAG	1 cut(s)	617
Sfr274I	CTCGAG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	436
SlaI	CTCGAG	1 cut(s)	161
SmlI	CTYRAG	3 cut(s)	161, 488, 520
SmoI	CTYRAG	3 cut(s)	161, 488, 520
Sse9I	AATT	3 cut(s)	414, 769, 828
SseBI	AGGCCT	1 cut(s)	575
SsiI	CCGC	2 cut(s)	327, 708
SspMI	CTAG	4 cut(s)	63, 693, 798, 854
StuI	AGGCCT	1 cut(s)	575
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	3 cut(s)	461, 647, 763
TaqI	TCGA	2 cut(s)	162, 767
TasI	AATT	3 cut(s)	414, 769, 828
Tru1I	TTAA	3 cut(s)	483, 521, 874
Tru9I	TTAA	3 cut(s)	483, 521, 874
TscAI	CASTG	5 cut(s)	406, 572, 589, 766, 817
TseFI	GTSAC	1 cut(s)	722
TseI	GCWGC	8 cut(s)	110, 209, 230, 233, 350, 506, 536, 619
Tsp45I	GTSAC	1 cut(s)	722
TspDTI	ATGAA	3 cut(s)	279, 732, 851
TspRI	CASTG	5 cut(s)	406, 572, 589, 766, 817
Vha464I	CTTAAG	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	436
XagI	CCTNNNNNAGG	1 cut(s)	620
XapI	RAATTY	2 cut(s)	414, 769
XbaI	TCTAGA	1 cut(s)	853
XhoI	CTCGAG	1 cut(s)	161
XmiI	GTMKAC	2 cut(s)	477, 697
XspI	CTAG	4 cut(s)	63, 693, 798, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.