Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008536

Physical Location & Seq

Genomic Coordinates Forward (+)

26233682 .. 26236847

Gene Structure 3166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24690.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCGGGTTCCGATCCAAACAAGTTGCTCGTCAAAGCCGATAAACTAACAAGACTCAGTCTTACAAGGTGGAGTGCGGATTGGAAAAGCGCTACTCTTTTGTACGAACAAGCTGCAAATGGTTTTAGGATTGCCAAGGATTACGAGAAAGCAAAGGAAGCGTTGGAAAAAGCTTCGAAAGGACAAGAATTGATCTCCTCACCCTGGGATGCTGCAAAGCATATGGAGTCTGCTGCTGCTCTAGCAAAGGAGTTAGGAAAATGGAATGAAGTTGCTGACTTCTATAAAAGGGCGTCTGAATTGTACGCTGAGTGTGGGAGACCACAGCCGGCTTCAGATGCTCTTGCGAAAGGGGCCCGTGCTCTGGAAGATTCTATGCCTGATGAAGCTATTCAACTTTACACTGATGCTTGTGCTATTCTTGAAGAAGATGGCAAGGAGCAAATGGCCTTCGATCTATATCGTGATGCAACTAGTGTTTACATAAAAAATGAGAAGTATACAGATGCTGCTGCTTTAATGTTGAGATTTGGCGTATCTGCTGATAAGTGCAATGCTACCCATAGCCAGTGCAAGGCATATCTTGGTGCCATAATTATTTACCTTTATCTTCATGACATCAAGCAAGCAGAACAATGCTACAATGACTGCTCCCAGGTTGACGCTTTTATGAGAAGTGATCAATGCCGTTTTGCTGGTAAACTCCTCTCGGCTTACACAGACGGTGACGTTGAAGAAATAAAAAAACTTGCTCAGTCAGGCACGGTTAATCATCTTGATCACATGATCGATCAGGCTCGCCAGGAAACTGCCGACGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019905 GO:0031090 GO:0031201 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNAP

Protein Analysis

274

Amino Acids

30.31

Weight (kDa)

5.1

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20410 AT4G20410
fragaria_vesca	FvH4_3g11520 FvH4_3g11520 FvH4_3g11520
malus_domestica	MD00G1097300.v1.1
prunus_persica	Prupe.4G102500_v2.0.a1 Prupe.4G102500_v2.0.a1
pyrus_communis	pycom05g24690 pycom10g20160
rosa_chinensis	RchiOBHm_Chr5g0018471
rosa_laevigata	RLG00000032368
rosa_multiflora	Rmu_sc0004464.1_g000015
rosa_roxburghii	Rroxscaffold_1G00059260
rosa_rugosa	Rorug05G0044300
rosa_samantha	Rh5AG135700 Rh5BG134400 Rh5CG146500 Rh5DG135600
rosa_wichuraiana	Rw5G011870 Rw5G011910 Rw5G011990 Rw5G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	587
AccI	GTMKAC	1 cut(s)	500
AciI	CCGC	2 cut(s)	5, 77
AclWI	GGATC	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	293
AfaI	GTAC	2 cut(s)	104, 305
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	3 cut(s)	204, 364, 574
AgsI	TTSAA	3 cut(s)	395, 425, 734
AhlI	ACTAGT	1 cut(s)	473
AjnI	CCWGG	3 cut(s)	203, 654, 801
AluBI	AGCT	3 cut(s)	113, 173, 389
AluI	AGCT	3 cut(s)	113, 173, 389
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	1 cut(s)	8
AlwNI	CAGNNNCTG	1 cut(s)	509
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	2 cut(s)	354, 447
ApaI	GGGCCC	1 cut(s)	358
ApeKI	GCWGC	6 cut(s)	113, 212, 233, 236, 509, 512
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	354, 355
AsuHPI	GGTGA	2 cut(s)	192, 737
AsuII	TTCGAA	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	587
BanII	GRGCYC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	6 cut(s)	100, 199, 220, 223, 496, 499
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	1 cut(s)	672
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BciT130I	CCWGG	3 cut(s)	205, 656, 803
BclI	TGATCA	2 cut(s)	679, 778
BcoDI	GTCTC	1 cut(s)	313
BcuI	ACTAGT	1 cut(s)	473
BfaI	CTAG	2 cut(s)	242, 474
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	6 cut(s)	114, 213, 234, 237, 510, 513
BlsI	GCNGC	6 cut(s)	115, 214, 235, 238, 511, 514
Bme1390I	CCNGG	3 cut(s)	205, 656, 803
BmgT120I	GGNCC	2 cut(s)	354, 355
BmiI	GGNNCC	4 cut(s)	10, 355, 356, 589
BmrFI	CCNGG	3 cut(s)	205, 656, 803
BmsI	GCATC	5 cut(s)	199, 328, 397, 457, 496
Bpu14I	TTCGAA	1 cut(s)	176
Bsa29I	ATCGAT	1 cut(s)	789
BsaBI	GATNNNNATC	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	4 cut(s)	135, 203, 204, 654
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 364, 574
Bse118I	RCCGGY	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	568
Bse3DI	GCAATG	1 cut(s)	559
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	3 cut(s)	205, 656, 803
BseCI	ATCGAT	1 cut(s)	789
BseDI	CCNNGG	4 cut(s)	135, 203, 204, 654
BseGI	GGATG	1 cut(s)	214
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	3 cut(s)	204, 364, 574
BseMI	GCAATG	1 cut(s)	559
BseMII	CTCAG	3 cut(s)	70, 300, 767
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	2 cut(s)	187, 695
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	6 cut(s)	100, 199, 220, 223, 496, 499
BshFI	GGCC	2 cut(s)	356, 449
BshNI	GGYRCC	1 cut(s)	587
BshVI	ATCGAT	1 cut(s)	789
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	329
BslI	CCNNNNNNNGG	3 cut(s)	204, 364, 574
BsmAI	GTCTC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	356, 449
Bso31I	GGTCTC	1 cut(s)	313
Bsp119I	TTCGAA	1 cut(s)	176
Bsp120I	GGGCCC	1 cut(s)	354
Bsp1286I	GDGCHC	2 cut(s)	358, 364
Bsp143I	GATC	7 cut(s)	13, 192, 454, 679, 778, 786, 790
BspACI	CCGC	2 cut(s)	5, 77
BspANI	GGCC	2 cut(s)	356, 449
BspCNI	CTCAG	3 cut(s)	69, 301, 766
BspDI	ATCGAT	1 cut(s)	789
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	4 cut(s)	10, 355, 356, 589
BspPI	GGATC	1 cut(s)	8
BspT104I	TTCGAA	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	587
BspTNI	GGTCTC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	559
BsrFI	RCCGGY	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	568
BssAI	RCCGGY	1 cut(s)	328
BssECI	CCNNGG	4 cut(s)	135, 203, 204, 654
BssMI	GATC	7 cut(s)	13, 192, 454, 679, 778, 786, 790
BssNAI	GTATAC	1 cut(s)	501
BssNI	GRCGYC	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	135
Bst1107I	GTATAC	1 cut(s)	501
Bst2UI	CCWGG	3 cut(s)	205, 656, 803
Bst4CI	ACNGT	2 cut(s)	725, 766
BstACI	GRCGYC	1 cut(s)	293
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	3 cut(s)	330, 627, 799
BstDEI	CTNAG	3 cut(s)	56, 309, 753
BstF5I	GGATG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	7 cut(s)	16, 195, 457, 682, 781, 789, 793
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	7 cut(s)	13, 192, 454, 679, 778, 786, 790
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 242, 338, 353
BstNI	CCWGG	3 cut(s)	205, 656, 803
BstSCI	CCNGG	3 cut(s)	203, 654, 801
BstSLI	GKGCMC	1 cut(s)	358
BstV1I	GCAGC	6 cut(s)	100, 199, 220, 223, 496, 499
BstZ17I	GTATAC	1 cut(s)	501
Bsu15I	ATCGAT	1 cut(s)	789
BsuRI	GGCC	2 cut(s)	356, 449
BsuTUI	ATCGAT	1 cut(s)	789
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	402, 575
Cac8I	GCNNGC	3 cut(s)	330, 627, 799
CaiI	CAGNNNCTG	1 cut(s)	509
CciI	TCATGA	1 cut(s)	613
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	328
Cfr13I	GGNCC	2 cut(s)	354, 355
ClaI	ATCGAT	1 cut(s)	789
CseI	GACGC	2 cut(s)	282, 671
Csp6I	GTAC	2 cut(s)	103, 304
CviAII	CATG	2 cut(s)	614, 784
CviQI	GTAC	2 cut(s)	103, 304
DdeI	CTNAG	3 cut(s)	56, 309, 753
DpnI	GATC	7 cut(s)	15, 194, 456, 681, 780, 788, 792
DpnII	GATC	7 cut(s)	13, 192, 454, 679, 778, 786, 790
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	358
Eco31I	GGTCTC	1 cut(s)	313
Eco47III	AGCGCT	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	354
EcoRII	CCWGG	3 cut(s)	203, 654, 801
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	617, 787
FatI	CATG	2 cut(s)	613, 783
FauNDI	CATATG	1 cut(s)	222
FbaI	TGATCA	2 cut(s)	679, 778
FblI	GTMKAC	1 cut(s)	500
Fnu4HI	GCNGC	6 cut(s)	114, 213, 234, 237, 510, 513
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	6 cut(s)	114, 213, 234, 237, 510, 513
FspBI	CTAG	2 cut(s)	242, 474
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	6 cut(s)	114, 213, 234, 237, 510, 513
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	356, 449
HapII	CCGG	1 cut(s)	329
HgaI	GACGC	2 cut(s)	282, 671
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	293
Hin1II	CATG	2 cut(s)	617, 787
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	3 cut(s)	54, 227, 371
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	2 cut(s)	192, 737
Hpy166II	GTNNAC	4 cut(s)	481, 501, 661, 701
Hpy188I	TCNGA	3 cut(s)	13, 298, 337
Hpy188III	TCNNGA	5 cut(s)	365, 422, 464, 614, 776
Hpy8I	GTNNAC	4 cut(s)	481, 501, 661, 701
Hpy99I	CGWCG	1 cut(s)	818
HpyAV	CCTTC	1 cut(s)	460
HpyCH4III	ACNGT	2 cut(s)	725, 766
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	5 cut(s)	116, 215, 470, 552, 573
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 242, 338, 353
HpyF3I	CTNAG	3 cut(s)	56, 309, 753
HpySE526I	ACGT	1 cut(s)	729
Hsp92I	GRCGYC	1 cut(s)	293
Hsp92II	CATG	2 cut(s)	617, 787
HspAI	GCGC	1 cut(s)	90
KroI	GCCGGC	1 cut(s)	328
KroNI	GCCGGC	1 cut(s)	330
Ksp22I	TGATCA	2 cut(s)	679, 778
Kzo9I	GATC	7 cut(s)	13, 192, 454, 679, 778, 786, 790
LmnI	GCTCC	2 cut(s)	439, 656
Lsp1109I	GCAGC	6 cut(s)	100, 199, 220, 223, 496, 499
LweI	GCATC	5 cut(s)	199, 328, 397, 457, 496
MaeI	CTAG	2 cut(s)	242, 474
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	1 cut(s)	725
MalI	GATC	7 cut(s)	15, 194, 456, 681, 780, 788, 792
MboI	GATC	7 cut(s)	13, 192, 454, 679, 778, 786, 790
MboII	GAAGA	5 cut(s)	380, 437, 440, 602, 746
MhlI	GDGCHC	2 cut(s)	358, 364
MluCI	AATT	3 cut(s)	188, 299, 594
MlyI	GAGTC	2 cut(s)	48, 236
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	2 cut(s)	208, 716
MroNI	GCCGGC	1 cut(s)	328
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	2 cut(s)	518, 768
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	3 cut(s)	205, 656, 803
MvaI	CCWGG	3 cut(s)	205, 656, 803
MwoI	GCNNNNNNNGC	4 cut(s)	158, 242, 338, 353
NaeI	GCCGGC	1 cut(s)	330
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	7 cut(s)	13, 192, 454, 679, 778, 786, 790
NgoMIV	GCCGGC	1 cut(s)	328
NlaIII	CATG	2 cut(s)	617, 787
NlaIV	GGNNCC	4 cut(s)	10, 355, 356, 589
NmeAIII	GCCGAG	1 cut(s)	689
NmuCI	GTSAC	1 cut(s)	725
NspV	TTCGAA	1 cut(s)	176
PagI	TCATGA	1 cut(s)	613
PasI	CCCWGGG	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdiI	GCCGGC	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	371
PflFI	GACNNNGTC	1 cut(s)	57
PkrI	GCNGC	6 cut(s)	115, 214, 235, 238, 511, 514
PleI	GAGTC	2 cut(s)	48, 235
PpsI	GAGTC	2 cut(s)	48, 235
Psp6I	CCWGG	3 cut(s)	203, 654, 801
PspGI	CCWGG	3 cut(s)	203, 654, 801
PspN4I	GGNNCC	4 cut(s)	10, 355, 356, 589
PspOMI	GGGCCC	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	354, 355
PstNI	CAGNNNCTG	1 cut(s)	509
PsyI	GACNNNGTC	1 cut(s)	57
RsaI	GTAC	2 cut(s)	104, 305
RsaNI	GTAC	2 cut(s)	103, 304
SaqAI	TTAA	2 cut(s)	518, 768
SatI	GCNGC	6 cut(s)	114, 213, 234, 237, 510, 513
Sau3AI	GATC	7 cut(s)	13, 192, 454, 679, 778, 786, 790
Sau96I	GGNCC	2 cut(s)	354, 355
SchI	GAGTC	2 cut(s)	48, 236
ScrFI	CCNGG	3 cut(s)	205, 656, 803
SduI	GDGCHC	2 cut(s)	358, 364
SetI	ASST	7 cut(s)	71, 115, 175, 391, 606, 660, 732
SfaNI	GCATC	5 cut(s)	199, 328, 397, 457, 496
SfuI	TTCGAA	1 cut(s)	176
SpeI	ACTAGT	1 cut(s)	473
Sse9I	AATT	3 cut(s)	188, 299, 594
SsiI	CCGC	2 cut(s)	5, 77
SspMI	CTAG	2 cut(s)	242, 474
StyD4I	CCNGG	3 cut(s)	203, 654, 801
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	725, 766
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	3 cut(s)	176, 453, 789
TasI	AATT	3 cut(s)	188, 299, 594
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	518, 768
Tru9I	TTAA	2 cut(s)	518, 768
TscAI	CASTG	2 cut(s)	409, 575
TseFI	GTSAC	1 cut(s)	725
TseI	GCWGC	6 cut(s)	113, 212, 233, 236, 509, 512
Tsp45I	GTSAC	1 cut(s)	725
TspDTI	ATGAA	3 cut(s)	282, 399, 602
TspRI	CASTG	2 cut(s)	409, 575
Tth111I	GACNNNGTC	1 cut(s)	57
XmiI	GTMKAC	1 cut(s)	500
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	2 cut(s)	242, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.