Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0008536

Physical Location & Seq

Genomic Coordinates Forward (+)

20393735 .. 20397395

Gene Structure 3661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1097300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCGGGTTCCGATCCAAACAAGTTGCTCGCCAAAGCCGATAAACTAACAAGACTCAGTCTTACAAGGTGGAGTGCGGATTGGAAAAGCGCTACTCTTTTGTACGAACAAGCTGCAAATGGTTTTAGGATTGCCAAGGATTACGAGAAAGCAAAGGAAGCGTTGGAAAAAGCTTCGAAAGGACAAGAATTGATCTCCTCACCCTGGGATGCTGCAAAGCATATGGAGTCTGCTGCTGCTCTAGCGAAGGAGTTAGGAAAATGGAATGAAGTTGCTGACTTCTATAAAAGGGCGTCTGAATTGTACGCTGAGTGTGGGAGACCACAGCCGGCCTCAGATGCTCTTGCGAAAGGGGCCCGTGCTCTGGAAGATTCTATGCCTGATGAAGCTATTCAACTTTACACTGATGCTTGTGCTATTCTTGAAGAAGATGGCAAGGAGCAAATGGCCTTTGATCTATATCGTGATGCAACTAGTGTTTACATAAAAAGTGAGAAGTATACAGATGCCGCTGCTTTAATGTTGAGATTTGGTGTATCTGCTGATAAGTGCAATGCTACCCATAGCCAGTGCAAGGCATATCTTGGTGCCATAATTATTTACCTTTATCTTCATGACATCAAGCAAGCAGAACAATGCTACAATGACTGCTCCCAGGTTGACGCTTTTATGAGAAGTGATCAATGCCGTTTTGCTGGTAAACTCCTCTCAGCTTACACAGACGGTAATGTTGAAGAAATAAAAAAACTTGCTCAGTCAGGCACGGTTAATCATCTTGATCACATGATCATCAGGCTCGCCAGGAAACTGCCGACGGGTGATGTGAGCGCGCTGACGACCCATGCTTCTGAGGATCAAGAAGAACCGCTGGATGAAGATGACCTTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019905 GO:0031090 GO:0031201 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNAP

Protein Analysis

297

Amino Acids

32.8

Weight (kDa)

5.01

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	5 - 251	2.7e-25	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20410 AT4G20410
fragaria_vesca	FvH4_3g11520 FvH4_3g11520 FvH4_3g11520
malus_domestica	MD00G1097300.v1.1
prunus_persica	Prupe.4G102500_v2.0.a1 Prupe.4G102500_v2.0.a1
pyrus_communis	pycom05g24690 pycom10g20160
rosa_chinensis	RchiOBHm_Chr5g0018471
rosa_laevigata	RLG00000032368
rosa_multiflora	Rmu_sc0004464.1_g000015
rosa_roxburghii	Rroxscaffold_1G00059260
rosa_rugosa	Rorug05G0044300
rosa_samantha	Rh5AG135700 Rh5BG134400 Rh5CG146500 Rh5DG135600
rosa_wichuraiana	Rw5G011870 Rw5G011910 Rw5G011990 Rw5G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	587
AccI	GTMKAC	1 cut(s)	500
AccII	CGCG	1 cut(s)	830
AciI	CCGC	4 cut(s)	5, 77, 510, 866
AclWI	GGATC	2 cut(s)	8, 861
AcyI	GRCGYC	1 cut(s)	293
AfaI	GTAC	2 cut(s)	104, 305
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	3 cut(s)	204, 364, 574
AgsI	TTSAA	3 cut(s)	395, 425, 734
AhlI	ACTAGT	1 cut(s)	473
AjnI	CCWGG	3 cut(s)	203, 654, 800
AluBI	AGCT	4 cut(s)	113, 173, 389, 713
AluI	AGCT	4 cut(s)	113, 173, 389, 713
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	2 cut(s)	8, 861
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	3 cut(s)	330, 354, 447
ApaI	GGGCCC	1 cut(s)	358
ApeKI	GCWGC	5 cut(s)	113, 212, 233, 236, 512
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	3 cut(s)	92, 830, 832
AspS9I	GGNCC	2 cut(s)	354, 355
AsuHPI	GGTGA	2 cut(s)	192, 830
AsuII	TTCGAA	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	587
BanII	GRGCYC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	5 cut(s)	100, 199, 220, 223, 499
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	1 cut(s)	672
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BciT130I	CCWGG	3 cut(s)	205, 656, 802
BclI	TGATCA	3 cut(s)	679, 778, 786
BcoDI	GTCTC	1 cut(s)	313
BcuI	ACTAGT	1 cut(s)	473
BfaI	CTAG	2 cut(s)	242, 474
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	6 cut(s)	114, 213, 234, 237, 510, 513
BlsI	GCNGC	6 cut(s)	115, 214, 235, 238, 511, 514
Bme1390I	CCNGG	3 cut(s)	205, 656, 802
BmgT120I	GGNCC	2 cut(s)	354, 355
BmiI	GGNNCC	4 cut(s)	10, 355, 356, 589
BmrFI	CCNGG	3 cut(s)	205, 656, 802
BmsI	GCATC	5 cut(s)	199, 328, 397, 457, 496
Bpu14I	TTCGAA	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	4 cut(s)	135, 203, 204, 654
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 364, 574
Bse118I	RCCGGY	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	568
Bse3DI	GCAATG	1 cut(s)	559
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	3 cut(s)	205, 656, 802
BseDI	CCNNGG	4 cut(s)	135, 203, 204, 654
BseGI	GGATG	2 cut(s)	214, 877
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	3 cut(s)	204, 364, 574
BseMI	GCAATG	1 cut(s)	559
BseMII	CTCAG	6 cut(s)	70, 300, 348, 723, 767, 840
BseNI	ACTGG	1 cut(s)	568
BsePI	GCGCGC	1 cut(s)	828
BseRI	GAGGAG	2 cut(s)	187, 695
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	5 cut(s)	100, 199, 220, 223, 499
Bsh1236I	CGCG	1 cut(s)	830
BshFI	GGCC	3 cut(s)	332, 356, 449
BshNI	GGYRCC	1 cut(s)	587
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	329
BslI	CCNNNNNNNGG	3 cut(s)	204, 364, 574
BsmAI	GTCTC	1 cut(s)	313
BsnI	GGCC	3 cut(s)	332, 356, 449
Bso31I	GGTCTC	1 cut(s)	313
Bsp119I	TTCGAA	1 cut(s)	176
Bsp120I	GGGCCC	1 cut(s)	354
Bsp1286I	GDGCHC	2 cut(s)	358, 364
Bsp143I	GATC	7 cut(s)	13, 192, 454, 679, 778, 786, 853
BspACI	CCGC	4 cut(s)	5, 77, 510, 866
BspANI	GGCC	3 cut(s)	332, 356, 449
BspCNI	CTCAG	6 cut(s)	69, 301, 347, 722, 766, 841
BspFNI	CGCG	1 cut(s)	830
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	4 cut(s)	10, 355, 356, 589
BspPI	GGATC	2 cut(s)	8, 861
BspT104I	TTCGAA	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	587
BspTNI	GGTCTC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	559
BsrFI	RCCGGY	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	568
BssAI	RCCGGY	1 cut(s)	328
BssECI	CCNNGG	4 cut(s)	135, 203, 204, 654
BssHII	GCGCGC	1 cut(s)	828
BssMI	GATC	7 cut(s)	13, 192, 454, 679, 778, 786, 853
BssNAI	GTATAC	1 cut(s)	501
BssNI	GRCGYC	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	135
Bst1107I	GTATAC	1 cut(s)	501
Bst2UI	CCWGG	3 cut(s)	205, 656, 802
Bst4CI	ACNGT	2 cut(s)	725, 766
BstACI	GRCGYC	1 cut(s)	293
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	5 cut(s)	30, 330, 627, 798, 830
BstDEI	CTNAG	6 cut(s)	56, 309, 334, 709, 753, 849
BstF5I	GGATG	2 cut(s)	214, 877
BstFNI	CGCG	1 cut(s)	830
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	3 cut(s)	92, 830, 832
BstKTI	GATC	7 cut(s)	16, 195, 457, 682, 781, 789, 856
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	7 cut(s)	13, 192, 454, 679, 778, 786, 853
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 242, 338, 353
BstNI	CCWGG	3 cut(s)	205, 656, 802
BstSCI	CCNGG	3 cut(s)	203, 654, 800
BstSLI	GKGCMC	1 cut(s)	358
BstUI	CGCG	1 cut(s)	830
BstV1I	GCAGC	5 cut(s)	100, 199, 220, 223, 499
BstZ17I	GTATAC	1 cut(s)	501
BsuRI	GGCC	3 cut(s)	332, 356, 449
BtsCI	GGATG	2 cut(s)	214, 877
BtsIMutI	CAGTG	2 cut(s)	402, 575
Cac8I	GCNNGC	5 cut(s)	30, 330, 627, 798, 830
CciI	TCATGA	1 cut(s)	613
CfoI	GCGC	3 cut(s)	92, 830, 832
Cfr10I	RCCGGY	1 cut(s)	328
Cfr13I	GGNCC	2 cut(s)	354, 355
CseI	GACGC	2 cut(s)	282, 671
Csp6I	GTAC	2 cut(s)	103, 304
CviAII	CATG	3 cut(s)	614, 784, 842
CviQI	GTAC	2 cut(s)	103, 304
DdeI	CTNAG	6 cut(s)	56, 309, 334, 709, 753, 849
DpnI	GATC	7 cut(s)	15, 194, 456, 681, 780, 788, 855
DpnII	GATC	7 cut(s)	13, 192, 454, 679, 778, 786, 853
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	358
Eco31I	GGTCTC	1 cut(s)	313
Eco47III	AGCGCT	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	354
EcoRII	CCWGG	3 cut(s)	203, 654, 800
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	3 cut(s)	617, 787, 845
FalI	AAGNNNNNCTT	1 cut(s)	867
FatI	CATG	3 cut(s)	613, 783, 841
FauNDI	CATATG	1 cut(s)	222
FbaI	TGATCA	3 cut(s)	679, 778, 786
FblI	GTMKAC	1 cut(s)	500
Fnu4HI	GCNGC	6 cut(s)	114, 213, 234, 237, 510, 513
FokI	GGATG	2 cut(s)	221, 884
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	6 cut(s)	114, 213, 234, 237, 510, 513
FspBI	CTAG	2 cut(s)	242, 474
GlaI	GCGC	3 cut(s)	91, 829, 831
GluI	GCNGC	6 cut(s)	114, 213, 234, 237, 510, 513
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	332, 356, 449
HapII	CCGG	1 cut(s)	329
HgaI	GACGC	2 cut(s)	282, 671
HhaI	GCGC	3 cut(s)	92, 830, 832
Hin1I	GRCGYC	1 cut(s)	293
Hin1II	CATG	3 cut(s)	617, 787, 845
Hin6I	GCGC	3 cut(s)	90, 828, 830
HinP1I	GCGC	3 cut(s)	90, 828, 830
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	3 cut(s)	54, 227, 371
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	2 cut(s)	192, 830
Hpy166II	GTNNAC	4 cut(s)	481, 501, 661, 701
Hpy188I	TCNGA	4 cut(s)	13, 298, 337, 850
Hpy188III	TCNNGA	6 cut(s)	365, 422, 464, 614, 776, 857
Hpy8I	GTNNAC	4 cut(s)	481, 501, 661, 701
Hpy99I	CGWCG	1 cut(s)	817
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	2 cut(s)	725, 766
HpyCH4V	TGCA	5 cut(s)	116, 215, 470, 552, 573
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 242, 338, 353
HpyF3I	CTNAG	6 cut(s)	56, 309, 334, 709, 753, 849
Hsp92I	GRCGYC	1 cut(s)	293
Hsp92II	CATG	3 cut(s)	617, 787, 845
HspAI	GCGC	3 cut(s)	90, 828, 830
KroI	GCCGGC	1 cut(s)	328
KroNI	GCCGGC	1 cut(s)	330
Ksp22I	TGATCA	3 cut(s)	679, 778, 786
Kzo9I	GATC	7 cut(s)	13, 192, 454, 679, 778, 786, 853
LmnI	GCTCC	2 cut(s)	439, 656
Lsp1109I	GCAGC	5 cut(s)	100, 199, 220, 223, 499
LweI	GCATC	5 cut(s)	199, 328, 397, 457, 496
MaeI	CTAG	2 cut(s)	242, 474
MalI	GATC	7 cut(s)	15, 194, 456, 681, 780, 788, 855
MboI	GATC	7 cut(s)	13, 192, 454, 679, 778, 786, 853
MboII	GAAGA	7 cut(s)	380, 437, 440, 602, 746, 872, 887
MhlI	GDGCHC	2 cut(s)	358, 364
MluCI	AATT	3 cut(s)	188, 299, 594
MlyI	GAGTC	2 cut(s)	48, 236
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	4 cut(s)	208, 343, 716, 844
MroNI	GCCGGC	1 cut(s)	328
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	2 cut(s)	518, 768
MspA1I	CMGCKG	2 cut(s)	512, 868
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	3 cut(s)	205, 656, 802
MvaI	CCWGG	3 cut(s)	205, 656, 802
MvnI	CGCG	1 cut(s)	830
MwoI	GCNNNNNNNGC	4 cut(s)	158, 242, 338, 353
NaeI	GCCGGC	1 cut(s)	330
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	7 cut(s)	13, 192, 454, 679, 778, 786, 853
NgoMIV	GCCGGC	1 cut(s)	328
NlaIII	CATG	3 cut(s)	617, 787, 845
NlaIV	GGNNCC	4 cut(s)	10, 355, 356, 589
NspV	TTCGAA	1 cut(s)	176
PagI	TCATGA	1 cut(s)	613
PasI	CCCWGGG	1 cut(s)	204
PauI	GCGCGC	1 cut(s)	828
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdiI	GCCGGC	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	371
PflFI	GACNNNGTC	1 cut(s)	57
PkrI	GCNGC	6 cut(s)	115, 214, 235, 238, 511, 514
PleI	GAGTC	2 cut(s)	48, 235
PpsI	GAGTC	2 cut(s)	48, 235
Psp6I	CCWGG	3 cut(s)	203, 654, 800
PspGI	CCWGG	3 cut(s)	203, 654, 800
PspN4I	GGNNCC	4 cut(s)	10, 355, 356, 589
PspOMI	GGGCCC	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	354, 355
PsyI	GACNNNGTC	1 cut(s)	57
PteI	GCGCGC	1 cut(s)	828
RsaI	GTAC	2 cut(s)	104, 305
RsaNI	GTAC	2 cut(s)	103, 304
SaqAI	TTAA	2 cut(s)	518, 768
SatI	GCNGC	6 cut(s)	114, 213, 234, 237, 510, 513
Sau3AI	GATC	7 cut(s)	13, 192, 454, 679, 778, 786, 853
Sau96I	GGNCC	2 cut(s)	354, 355
SchI	GAGTC	2 cut(s)	48, 236
ScrFI	CCNGG	3 cut(s)	205, 656, 802
SduI	GDGCHC	2 cut(s)	358, 364
SetI	ASST	8 cut(s)	71, 115, 175, 391, 606, 660, 715, 885
SfaNI	GCATC	5 cut(s)	199, 328, 397, 457, 496
SfuI	TTCGAA	1 cut(s)	176
SpeI	ACTAGT	1 cut(s)	473
Sse9I	AATT	3 cut(s)	188, 299, 594
SsiI	CCGC	4 cut(s)	5, 77, 510, 866
SspMI	CTAG	2 cut(s)	242, 474
StyD4I	CCNGG	3 cut(s)	203, 654, 800
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	725, 766
TaqI	TCGA	1 cut(s)	176
TasI	AATT	3 cut(s)	188, 299, 594
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	518, 768
Tru9I	TTAA	2 cut(s)	518, 768
TscAI	CASTG	2 cut(s)	409, 575
TseI	GCWGC	5 cut(s)	113, 212, 233, 236, 512
TspDTI	ATGAA	4 cut(s)	282, 399, 602, 888
TspRI	CASTG	2 cut(s)	409, 575
Tth111I	GACNNNGTC	1 cut(s)	57
XmiI	GTMKAC	1 cut(s)	500
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	2 cut(s)	242, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.