Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008536

Physical Location & Seq

Genomic Coordinates Reverse (-)

13550505 .. 13593629

Gene Structure 43125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG135600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 656 bp

ATGGCGGGTTCCGATCCAAACAAGCTGATGGCCAAAGCCGATAAGCTAACGAAGCTCAGTTTTACAAGGTGGAATGCTGATTGGAAAAGCGCTACTCTTCTGTATGAGCAAGCGGCTAATGGGTTTAGGATTGCCAAGGATTACGAGAAAGCAAAGGACGCACTCGAAAAAGCATCAAAAGGACAAGAGTTGATCTCCTCACCCTGGGATGCTGCAAAGCATATGGAGTCTGCTGCTGCTCTAGCAAAGGAGTTAGGCAAGTGGAATGAAGTTGCTGATTTTTACAGAAGGGCATCAGAATTATACACTGTGTGTGGAAGAGCACAGCCTGCATCAGATGCTCTTGCAAAAGGAGCCCGTACCCTTGAAGATCCTGTGCCTGAAGAAGCCATTCAACTTTACATTGAGGCCTGCACTATTCTTGAAGACGACGGCAAAGAGCAAATGGCCTTTGATCTATATCGAGATGTTACTAGTGTTTATATAAAACTTCAAAAGTATACAGATGCTGCGGCTTTCCTGTTGAGATGGGGCTTAGCAGCTGATAAGTGTAATGCTACCCATAGCCAGTGCAAGGCATATCTTAGTCCAATTCTCATATACCTGTATATTCATGACGTCAAGCAGGCAGAAAAATGCTACAATGATTGCTCCCA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019905 GO:0031090 GO:0031201 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNAP

Protein Analysis

218

Amino Acids

24.41

Weight (kDa)

5.72

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	5 - 215	2.8e-20	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20410 AT4G20410
fragaria_vesca	FvH4_3g11520 FvH4_3g11520 FvH4_3g11520
malus_domestica	MD00G1097300.v1.1
prunus_persica	Prupe.4G102500_v2.0.a1 Prupe.4G102500_v2.0.a1
pyrus_communis	pycom05g24690 pycom10g20160
rosa_chinensis	RchiOBHm_Chr5g0018471
rosa_laevigata	RLG00000032368
rosa_multiflora	Rmu_sc0004464.1_g000015
rosa_roxburghii	Rroxscaffold_1G00059260
rosa_rugosa	Rorug05G0044300
rosa_samantha	Rh5AG135700 Rh5BG134400 Rh5CG146500 Rh5DG135600
rosa_wichuraiana	Rw5G011870 Rw5G011910 Rw5G011990 Rw5G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	621
AccI	GTMKAC	1 cut(s)	500
AciI	CCGC	3 cut(s)	5, 113, 512
AclWI	GGATC	2 cut(s)	8, 365
AcoI	YGGCCR	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	402
AcyI	GRCGYC	1 cut(s)	618
AdeI	CACNNNGTG	1 cut(s)	312
AfaI	GTAC	1 cut(s)	361
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	204, 574
AgsI	TTSAA	4 cut(s)	368, 395, 425, 494
AhlI	ACTAGT	1 cut(s)	473
AjnI	CCWGG	1 cut(s)	203
AluBI	AGCT	4 cut(s)	25, 46, 55, 542
AluI	AGCT	4 cut(s)	25, 46, 55, 542
Alw21I	GWGCWC	1 cut(s)	325
AlwI	GGATC	2 cut(s)	8, 365
AlwNI	CAGNNNCTG	1 cut(s)	509
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	3 cut(s)	30, 408, 447
ApeKI	GCWGC	5 cut(s)	212, 233, 236, 509, 539
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	5 cut(s)	199, 220, 223, 496, 551
BccI	CCATC	2 cut(s)	22, 522
BceAI	ACGGC	1 cut(s)	448
BciT130I	CCWGG	1 cut(s)	205
BcuI	ACTAGT	1 cut(s)	473
BfaI	CTAG	2 cut(s)	242, 474
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	7 cut(s)	114, 213, 234, 237, 510, 513, 540
BlpI	GCTNAGC	1 cut(s)	535
BlsI	GCNGC	7 cut(s)	115, 214, 235, 238, 511, 514, 541
Bme1390I	CCNGG	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	10, 355
BmrFI	CCNGG	1 cut(s)	205
BmsI	GCATC	6 cut(s)	182, 199, 302, 328, 341, 496
BpiI	GAAGAC	1 cut(s)	432
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
Bpu1102I	GCTNAGC	1 cut(s)	535
BsaBI	GATNNNNATC	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	618
BsaJI	CCNNGG	3 cut(s)	135, 203, 204
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 574
Bse1I	ACTGG	1 cut(s)	568
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	3 cut(s)	135, 203, 204
BseGI	GGATG	1 cut(s)	214
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	2 cut(s)	204, 574
BseMII	CTCAG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	1 cut(s)	187
BseXI	GCAGC	5 cut(s)	199, 220, 223, 496, 551
BsgI	GTGCAG	1 cut(s)	397
BshFI	GGCC	3 cut(s)	32, 410, 449
BsiHKAI	GWGCWC	1 cut(s)	325
BslI	CCNNNNNNNGG	2 cut(s)	204, 574
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	3 cut(s)	32, 410, 449
Bsp1286I	GDGCHC	2 cut(s)	325, 358
Bsp143I	GATC	4 cut(s)	13, 192, 370, 454
Bsp1720I	GCTNAGC	1 cut(s)	535
BspACI	CCGC	3 cut(s)	5, 113, 512
BspANI	GGCC	3 cut(s)	32, 410, 449
BspCNI	CTCAG	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	2 cut(s)	10, 355
BspPI	GGATC	2 cut(s)	8, 365
BspQI	GCTCTTC	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	568
BssECI	CCNNGG	3 cut(s)	135, 203, 204
BssMI	GATC	4 cut(s)	13, 192, 370, 454
BssNAI	GTATAC	1 cut(s)	501
BssNI	GRCGYC	1 cut(s)	618
BssT1I	CCWWGG	1 cut(s)	135
Bst1107I	GTATAC	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	2 cut(s)	102, 313
BstACI	GRCGYC	1 cut(s)	618
BstAPI	GCANNNNNTGC	2 cut(s)	329, 338
BstC8I	GCNNGC	4 cut(s)	111, 330, 412, 627
BstDEI	CTNAG	3 cut(s)	56, 535, 584
BstF5I	GGATG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	4 cut(s)	16, 195, 373, 457
BstMBI	GATC	4 cut(s)	13, 192, 370, 454
BstMWI	GCNNNNNNNGC	6 cut(s)	52, 158, 242, 329, 338, 353
BstNI	CCWGG	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	203
BstV1I	GCAGC	5 cut(s)	199, 220, 223, 496, 551
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BstZ17I	GTATAC	1 cut(s)	501
BsuRI	GGCC	3 cut(s)	32, 410, 449
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	306, 575
Cac8I	GCNNGC	4 cut(s)	111, 330, 412, 627
CaiI	CAGNNNCTG	1 cut(s)	509
CciI	TCATGA	1 cut(s)	613
CfoI	GCGC	1 cut(s)	92
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	1 cut(s)	614
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	3 cut(s)	56, 535, 584
DpnI	GATC	4 cut(s)	15, 194, 372, 456
DpnII	GATC	4 cut(s)	13, 192, 370, 454
DraIII	CACNNNGTG	1 cut(s)	312
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	102, 313
EarI	CTCTTC	2 cut(s)	102, 313
Eco130I	CCWWGG	1 cut(s)	135
Eco147I	AGGCCT	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	358
Eco47III	AGCGCT	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	402
EcoRII	CCWGG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	1 cut(s)	617
FatI	CATG	1 cut(s)	613
FauNDI	CATATG	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	500
Fnu4HI	GCNGC	7 cut(s)	114, 213, 234, 237, 510, 513, 540
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	7 cut(s)	114, 213, 234, 237, 510, 513, 540
FspBI	CTAG	2 cut(s)	242, 474
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	7 cut(s)	114, 213, 234, 237, 510, 513, 540
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	32, 410, 449
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	618
Hin1II	CATG	1 cut(s)	617
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	1 cut(s)	227
HphI	GGTGA	1 cut(s)	192
Hpy166II	GTNNAC	1 cut(s)	501
Hpy188I	TCNGA	3 cut(s)	13, 298, 337
Hpy188III	TCNNGA	3 cut(s)	422, 464, 614
Hpy8I	GTNNAC	1 cut(s)	501
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	1 cut(s)	282
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	5 cut(s)	215, 332, 347, 414, 573
HpyF10VI	GCNNNNNNNGC	6 cut(s)	52, 158, 242, 329, 338, 353
HpyF3I	CTNAG	3 cut(s)	56, 535, 584
HpySE526I	ACGT	1 cut(s)	618
Hsp92I	GRCGYC	1 cut(s)	618
Hsp92II	CATG	1 cut(s)	617
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	4 cut(s)	13, 192, 370, 454
LguI	GCTCTTC	1 cut(s)	313
LmnI	GCTCC	2 cut(s)	353, 656
Lsp1109I	GCAGC	5 cut(s)	199, 220, 223, 496, 551
LweI	GCATC	6 cut(s)	182, 199, 302, 328, 341, 496
MaeI	CTAG	2 cut(s)	242, 474
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	4 cut(s)	15, 194, 372, 456
MboI	GATC	4 cut(s)	13, 192, 370, 454
MboII	GAAGA	5 cut(s)	89, 330, 380, 395, 437
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	2 cut(s)	325, 358
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	2 cut(s)	299, 591
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	2 cut(s)	208, 400
Mox20I	TGGCCA	1 cut(s)	32
MroXI	GAANNNNTTC	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	32
Msp20I	TGGCCA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	205
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	6 cut(s)	52, 158, 242, 329, 338, 353
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	4 cut(s)	13, 192, 370, 454
NlaIII	CATG	1 cut(s)	617
NlaIV	GGNNCC	2 cut(s)	10, 355
PagI	TCATGA	1 cut(s)	613
PasI	CCCWGGG	1 cut(s)	204
PceI	AGGCCT	1 cut(s)	410
PciSI	GCTCTTC	1 cut(s)	313
PctI	GAATGC	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	390
PkrI	GCNGC	7 cut(s)	115, 214, 235, 238, 511, 514, 541
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	10, 355
PstNI	CAGNNNCTG	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	313
SatI	GCNGC	7 cut(s)	114, 213, 234, 237, 510, 513, 540
Sau3AI	GATC	4 cut(s)	13, 192, 370, 454
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	2 cut(s)	325, 358
SetI	ASST	7 cut(s)	27, 48, 57, 71, 544, 606, 621
SfaNI	GCATC	6 cut(s)	182, 199, 302, 328, 341, 496
SpeI	ACTAGT	1 cut(s)	473
Sse9I	AATT	2 cut(s)	299, 591
SseBI	AGGCCT	1 cut(s)	410
SsiI	CCGC	3 cut(s)	5, 113, 512
SspMI	CTAG	2 cut(s)	242, 474
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	2 cut(s)	165, 463
TasI	AATT	2 cut(s)	299, 591
TauI	GCSGC	2 cut(s)	116, 515
TscAI	CASTG	2 cut(s)	313, 575
TseI	GCWGC	5 cut(s)	212, 233, 236, 509, 539
TspDTI	ATGAA	2 cut(s)	282, 602
TspRI	CASTG	2 cut(s)	313, 575
XmiI	GTMKAC	1 cut(s)	500
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	2 cut(s)	242, 474
ZraI	GACGTC	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.