Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008536

Physical Location & Seq

Genomic Coordinates Reverse (-)

5230836 .. 5234905

Gene Structure 4070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G102500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCGGGTTCCGATCCAAACAAGTTGATGGCCAAAGCCGATAAATTAACGAGGCTCAGTCTTACAAGGTGGAGTGCAGATTGGAAAAGCGCTACTCTTCTGTATGAACAAGCTGCTAATGGGTTTAGGATTGCCAAGGATTATGAGAAAGCAAAGGAAGCATTGGAAAAAGCATCAAAAGGACAAGAATTGATCTCTTCACCCTGGGATGCTGCAAAGCATATGGAGTCAGCTGCTGCTTTAGCAAAGGAGTTGGGAAAATGGAATGAAGTTGCTGATTTCTATAGAAGGGCATCTGAATTGTACGTTGTGTGTGGGAGATCACAACCTGCATCAGATGCTCTTGCGAAAGGGGCCCGAGCTCTGGAAGATTCTGTTCCTGATGAAGCTATTCAACTTTACACTGATGCTTGTGTTCTTCTTGAAGATGATGACAAGGATCAAATGGCCTTTGATCTATATCGTGCTGCCACTAGTGTTTATATAAAACTTGAGAAGTACACAGATGCTGCTGCTTTTCTGTTGAGATGGGGCTTAGCAGCTGATAAGTGTAATGCTACCAATAGCCAATGCAAGGCATATCTTAGTGCAATAATTGTTTACCTCTATGTTCATGACATCAAACAAGCAGAAAAATGCTACAATGATTGCTCCCAGGTTGACACCTTTTCGAGAAGTGATCAATGCCGTTTTGCAAGTAAACTTTTTTCTGCTTACACAGAAGGTGACGTTGAAGAAATTAAACGGCTTTCTCAGTCAAGCACGGTTAATAATCTTGATCACATGGTCATCAGGCTCGCCAGGAAACTGCCCACAGGTGATGTGAGTGCACTGAAGACACATGCTTCCGACGAGCAAGAACCACTGGACGAAGATGACCTTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019905 GO:0031090 GO:0031201 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNAP

Protein Analysis

296

Amino Acids

32.88

Weight (kDa)

5.06

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20410 AT4G20410
fragaria_vesca	FvH4_3g11520 FvH4_3g11520 FvH4_3g11520
malus_domestica	MD00G1097300.v1.1
prunus_persica	Prupe.4G102500_v2.0.a1 Prupe.4G102500_v2.0.a1
pyrus_communis	pycom05g24690 pycom10g20160
rosa_chinensis	RchiOBHm_Chr5g0018471
rosa_laevigata	RLG00000032368
rosa_multiflora	Rmu_sc0004464.1_g000015
rosa_roxburghii	Rroxscaffold_1G00059260
rosa_rugosa	Rorug05G0044300
rosa_samantha	Rh5AG135700 Rh5BG134400 Rh5CG146500 Rh5DG135600
rosa_wichuraiana	Rw5G011870 Rw5G011910 Rw5G011990 Rw5G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	8, 447
AcoI	YGGCCR	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	854
AfaI	GTAC	2 cut(s)	305, 500
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	364, 574
AgsI	TTSAA	3 cut(s)	395, 425, 734
AhlI	ACTAGT	1 cut(s)	473
AjnI	CCWGG	3 cut(s)	203, 654, 800
AluBI	AGCT	5 cut(s)	113, 233, 362, 389, 542
AluI	AGCT	5 cut(s)	113, 233, 362, 389, 542
Alw21I	GWGCWC	2 cut(s)	364, 832
Alw44I	GTGCAC	1 cut(s)	828
AlwI	GGATC	2 cut(s)	8, 447
AlwNI	CAGNNNCTG	2 cut(s)	236, 509
Ama87I	CYCGRG	1 cut(s)	357
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	3 cut(s)	30, 354, 447
ApaI	GGGCCC	1 cut(s)	358
ApaLI	GTGCAC	1 cut(s)	828
ApeKI	GCWGC	8 cut(s)	113, 212, 233, 236, 467, 509, 512, 539
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	354, 355
AsuHPI	GGTGA	3 cut(s)	192, 737, 830
AvaI	CYCGRG	1 cut(s)	357
BaeGI	GKGCMC	2 cut(s)	358, 832
BalI	TGGCCA	1 cut(s)	32
BanII	GRGCYC	2 cut(s)	358, 364
BbsI	GAAGAC	1 cut(s)	842
Bbv12I	GWGCWC	2 cut(s)	364, 832
BbvI	GCAGC	8 cut(s)	100, 199, 220, 223, 454, 496, 499, 551
BccI	CCATC	2 cut(s)	22, 522
BceAI	ACGGC	2 cut(s)	672, 761
BciT130I	CCWGG	3 cut(s)	205, 656, 802
BclI	TGATCA	2 cut(s)	679, 778
BcuI	ACTAGT	1 cut(s)	473
BfaI	CTAG	1 cut(s)	474
BfmI	CTRYAG	1 cut(s)	283
BfoI	RGCGCY	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	337
BisI	GCNGC	8 cut(s)	114, 213, 234, 237, 468, 510, 513, 540
BlpI	GCTNAGC	1 cut(s)	535
BlsI	GCNGC	8 cut(s)	115, 214, 235, 238, 469, 511, 514, 541
Bme1390I	CCNGG	3 cut(s)	205, 656, 802
BmeT110I	CYCGRG	1 cut(s)	357
BmgT120I	GGNCC	2 cut(s)	354, 355
BmiI	GGNNCC	3 cut(s)	10, 355, 356
BmrFI	CCNGG	3 cut(s)	205, 656, 802
BmsI	GCATC	7 cut(s)	182, 199, 302, 328, 341, 397, 496
BpiI	GAAGAC	1 cut(s)	842
Bpu1102I	GCTNAGC	1 cut(s)	535
BpuEI	CTTGAG	1 cut(s)	512
BsaBI	GATNNNNATC	1 cut(s)	459
BsaJI	CCNNGG	4 cut(s)	135, 203, 204, 654
Bsc4I	CCNNNNNNNGG	2 cut(s)	364, 574
Bse1I	ACTGG	1 cut(s)	870
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	3 cut(s)	205, 656, 802
BseDI	CCNNGG	4 cut(s)	135, 203, 204, 654
BseGI	GGATG	1 cut(s)	214
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	2 cut(s)	364, 574
BseMII	CTCAG	2 cut(s)	70, 767
BseNI	ACTGG	1 cut(s)	870
BseSI	GKGCMC	2 cut(s)	358, 832
BseXI	GCAGC	8 cut(s)	100, 199, 220, 223, 454, 496, 499, 551
BsgI	GTGCAG	1 cut(s)	96
BshFI	GGCC	3 cut(s)	32, 356, 449
BsiHKAI	GWGCWC	2 cut(s)	364, 832
BsiHKCI	CYCGRG	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	364, 574
BsnI	GGCC	3 cut(s)	32, 356, 449
BsoBI	CYCGRG	1 cut(s)	357
Bsp120I	GGGCCC	1 cut(s)	354
Bsp1286I	GDGCHC	3 cut(s)	358, 364, 832
Bsp143I	GATC	7 cut(s)	13, 192, 320, 439, 454, 679, 778
Bsp1720I	GCTNAGC	1 cut(s)	535
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	32, 356, 449
BspCNI	CTCAG	2 cut(s)	69, 766
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	3 cut(s)	10, 355, 356
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	2 cut(s)	8, 447
BsrI	ACTGG	1 cut(s)	870
BssECI	CCNNGG	4 cut(s)	135, 203, 204, 654
BssMI	GATC	7 cut(s)	13, 192, 320, 439, 454, 679, 778
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	3 cut(s)	205, 656, 802
Bst4CI	ACNGT	1 cut(s)	766
Bst6I	CTCTTC	2 cut(s)	102, 202
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	798
BstDEI	CTNAG	4 cut(s)	56, 535, 584, 753
BstF5I	GGATG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	7 cut(s)	16, 195, 323, 442, 457, 682, 781
BstMBI	GATC	7 cut(s)	13, 192, 320, 439, 454, 679, 778
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 242, 338, 353
BstNI	CCWGG	3 cut(s)	205, 656, 802
BstNSI	RCATGY	1 cut(s)	845
BstSCI	CCNGG	3 cut(s)	203, 654, 800
BstSFI	CTRYAG	1 cut(s)	283
BstSLI	GKGCMC	2 cut(s)	358, 832
BstV1I	GCAGC	8 cut(s)	100, 199, 220, 223, 454, 496, 499, 551
BstV2I	GAAGAC	1 cut(s)	842
BsuRI	GGCC	3 cut(s)	32, 356, 449
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	3 cut(s)	402, 830, 863
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	798
CaiI	CAGNNNCTG	2 cut(s)	236, 509
CciI	TCATGA	1 cut(s)	613
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	354, 355
Csp6I	GTAC	2 cut(s)	304, 499
CviAII	CATG	3 cut(s)	614, 784, 842
CviQI	GTAC	2 cut(s)	304, 499
DdeI	CTNAG	4 cut(s)	56, 535, 584, 753
DpnI	GATC	7 cut(s)	15, 194, 322, 441, 456, 681, 780
DpnII	GATC	7 cut(s)	13, 192, 320, 439, 454, 679, 778
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	102, 202
EarI	CTCTTC	2 cut(s)	102, 202
Ecl136II	GAGCTC	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	358, 364
Eco47III	AGCGCT	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	854
Eco88I	CYCGRG	1 cut(s)	357
EcoICRI	GAGCTC	1 cut(s)	362
EcoO109I	RGGNCCY	1 cut(s)	354
EcoRII	CCWGG	3 cut(s)	203, 654, 800
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	2 cut(s)	358, 364
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	3 cut(s)	617, 787, 845
FalI	AAGNNNNNCTT	1 cut(s)	864
FatI	CATG	3 cut(s)	613, 783, 841
FauNDI	CATATG	1 cut(s)	222
FbaI	TGATCA	2 cut(s)	679, 778
Fnu4HI	GCNGC	8 cut(s)	114, 213, 234, 237, 468, 510, 513, 540
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	2 cut(s)	358, 364
Fsp4HI	GCNGC	8 cut(s)	114, 213, 234, 237, 468, 510, 513, 540
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	8 cut(s)	114, 213, 234, 237, 468, 510, 513, 540
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	32, 356, 449
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	3 cut(s)	617, 787, 845
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HinfI	GANTC	2 cut(s)	227, 371
HphI	GGTGA	3 cut(s)	192, 737, 830
Hpy166II	GTNNAC	5 cut(s)	501, 601, 661, 701, 830
Hpy188I	TCNGA	4 cut(s)	13, 298, 337, 850
Hpy188III	TCNNGA	6 cut(s)	365, 380, 422, 614, 672, 776
Hpy8I	GTNNAC	5 cut(s)	501, 601, 661, 701, 830
Hpy99I	CGWCG	1 cut(s)	854
HpyAV	CCTTC	2 cut(s)	282, 716
HpyCH4III	ACNGT	1 cut(s)	766
HpyCH4IV	ACGT	2 cut(s)	306, 729
HpyCH4V	TGCA	7 cut(s)	77, 215, 332, 573, 590, 695, 830
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 242, 338, 353
HpyF3I	CTNAG	4 cut(s)	56, 535, 584, 753
HpySE526I	ACGT	2 cut(s)	306, 729
Hsp92II	CATG	3 cut(s)	617, 787, 845
HspAI	GCGC	1 cut(s)	90
Ksp22I	TGATCA	2 cut(s)	679, 778
Kzo9I	GATC	7 cut(s)	13, 192, 320, 439, 454, 679, 778
LmnI	GCTCC	1 cut(s)	656
Lsp1109I	GCAGC	8 cut(s)	100, 199, 220, 223, 454, 496, 499, 551
LweI	GCATC	7 cut(s)	182, 199, 302, 328, 341, 397, 496
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	2 cut(s)	306, 729
MaeIII	GTNAC	1 cut(s)	725
MalI	GATC	7 cut(s)	15, 194, 322, 441, 456, 681, 780
MboI	GATC	7 cut(s)	13, 192, 320, 439, 454, 679, 778
MboII	GAAGA	8 cut(s)	89, 189, 380, 410, 437, 746, 847, 884
MhlI	GDGCHC	3 cut(s)	358, 364, 832
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	5 cut(s)	44, 188, 299, 594, 738
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	873
MnlI	CCTC	2 cut(s)	45, 614
Mox20I	TGGCCA	1 cut(s)	32
MroXI	GAANNNNTTC	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	3 cut(s)	47, 741, 768
Msp20I	TGGCCA	1 cut(s)	32
MspA1I	CMGCKG	2 cut(s)	233, 542
MspR9I	CCNGG	3 cut(s)	205, 656, 802
MvaI	CCWGG	3 cut(s)	205, 656, 802
MwoI	GCNNNNNNNGC	4 cut(s)	158, 242, 338, 353
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	7 cut(s)	13, 192, 320, 439, 454, 679, 778
NlaIII	CATG	3 cut(s)	617, 787, 845
NlaIV	GGNNCC	3 cut(s)	10, 355, 356
NmuCI	GTSAC	1 cut(s)	725
NspI	RCATGY	1 cut(s)	845
PagI	TCATGA	1 cut(s)	613
PasI	CCCWGGG	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	8 cut(s)	115, 214, 235, 238, 469, 511, 514, 541
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
Psp124BI	GAGCTC	1 cut(s)	364
Psp6I	CCWGG	3 cut(s)	203, 654, 800
PspGI	CCWGG	3 cut(s)	203, 654, 800
PspN4I	GGNNCC	3 cut(s)	10, 355, 356
PspOMI	GGGCCC	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	354, 355
PstNI	CAGNNNCTG	2 cut(s)	236, 509
PvuII	CAGCTG	2 cut(s)	233, 542
RsaI	GTAC	2 cut(s)	305, 500
RsaNI	GTAC	2 cut(s)	304, 499
SacI	GAGCTC	1 cut(s)	364
SaqAI	TTAA	3 cut(s)	47, 741, 768
SatI	GCNGC	8 cut(s)	114, 213, 234, 237, 468, 510, 513, 540
Sau3AI	GATC	7 cut(s)	13, 192, 320, 439, 454, 679, 778
Sau96I	GGNCC	2 cut(s)	354, 355
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	3 cut(s)	205, 656, 802
SduI	GDGCHC	3 cut(s)	358, 364, 832
SfaNI	GCATC	7 cut(s)	182, 199, 302, 328, 341, 397, 496
SfcI	CTRYAG	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
SpeI	ACTAGT	1 cut(s)	473
Sse9I	AATT	5 cut(s)	44, 188, 299, 594, 738
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	474
SstI	GAGCTC	1 cut(s)	364
StyD4I	CCNGG	3 cut(s)	203, 654, 800
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	766
TaiI	ACGT	2 cut(s)	309, 732
TaqI	TCGA	1 cut(s)	671
TasI	AATT	5 cut(s)	44, 188, 299, 594, 738
TatI	WGTACW	1 cut(s)	498
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	3 cut(s)	47, 741, 768
Tru9I	TTAA	3 cut(s)	47, 741, 768
TscAI	CASTG	3 cut(s)	409, 837, 870
TseFI	GTSAC	1 cut(s)	725
TseI	GCWGC	8 cut(s)	113, 212, 233, 236, 467, 509, 512, 539
Tsp45I	GTSAC	1 cut(s)	725
TspDTI	ATGAA	4 cut(s)	120, 282, 399, 602
TspRI	CASTG	3 cut(s)	409, 837, 870
VneI	GTGCAC	1 cut(s)	828
XceI	RCATGY	1 cut(s)	845
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.