Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008536

Physical Location & Seq

Genomic Coordinates Forward (+)

81257187 .. 81261115

Gene Structure 3929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00059260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCGGGTTCCGATCCAAACAAGCTGATGGCCAAAGCAGATAAGCTAACGAAGCTCAGTTTTACAAGGTGGAATGCTGATTGGAAAAGTGCTACTCTTCTGTATGAGCAAGCGGCTAATGGGTTTAGGATTGCCAAGGATTATGAGAAAGCAAAGGACGCGCTGGAAAAAGCATCAAAAGGACAAGAGTTGATCTCCTCACCTTGGGATGCGGCAAAGCATATGGAGTCTGCTGCTGCTCTAGCAAAGGAATTAGGCAAGTGGAATGAAGTTGCTGATTTTTACAGAAGGGCATCTGAATTATACACTGTGTGCGGAAGAGCACAGCCTGCATCAGATGCTCTTGCAAAAGGAGCCCGTGCTCTTGAAGATCCTGTGCCCGAAGAAGCTATTCAACTTTACATTGAGGCGTGCACTATTCTTGAAGACGATGGCAAAGAGCAAATGGCCTTTGATCTATATCGAGATGTTACTAGTGCGTATATAAAACTACAGAAGTATACAGATGCTGCGGCTTTCCTGTTGAGATGGGGCTTAGCAGCTGATAAGTGCAATGCTACCCATAGCCAGTGCAAGGCATATCTCAGTGCAATTCTCATATACCTGTATATTCATGATGTCAAGCAAGCAGAAAAATGCTACAACGATTGCTCCCAGGTCGATGCTTTTTTGGGCAATGATCATGGCCGATGTGCTAGTAAACTTCTTTCCGCATACACAGAAGGTGATATTGAAGAAATCAAACGACTTGCTCAGTCAAGCACAGTTTCTCATCTTGATCACATGGTCATCAGACTCGCCAGGAAACTGCCTACAGGTGATGTCAGTGGACTAAAGACAAATGCGTCCAAGGAGCAAGAAGAAGAATTGGATGAAGATGACCTTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019905 GO:0031090 GO:0031201 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNAP

Protein Analysis

296

Amino Acids

32.91

Weight (kDa)

5.22

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	5 - 265	3.5e-24	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20410 AT4G20410
fragaria_vesca	FvH4_3g11520 FvH4_3g11520 FvH4_3g11520
malus_domestica	MD00G1097300.v1.1
prunus_persica	Prupe.4G102500_v2.0.a1 Prupe.4G102500_v2.0.a1
pyrus_communis	pycom05g24690 pycom10g20160
rosa_chinensis	RchiOBHm_Chr5g0018471
rosa_laevigata	RLG00000032368
rosa_multiflora	Rmu_sc0004464.1_g000015
rosa_roxburghii	Rroxscaffold_1G00059260
rosa_rugosa	Rorug05G0044300
rosa_samantha	Rh5AG135700 Rh5BG134400 Rh5CG146500 Rh5DG135600
rosa_wichuraiana	Rw5G011870 Rw5G011910 Rw5G011990 Rw5G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	844
AccI	GTMKAC	1 cut(s)	500
AccII	CGCG	1 cut(s)	161
AciI	CCGC	6 cut(s)	5, 113, 212, 315, 512, 711
AclWI	GGATC	2 cut(s)	8, 365
AcoI	YGGCCR	2 cut(s)	30, 685
AdeI	CACNNNGTG	1 cut(s)	312
AfiI	CCNNNNNNNGG	2 cut(s)	204, 574
AgsI	TTSAA	4 cut(s)	368, 395, 425, 734
AhlI	ACTAGT	1 cut(s)	473
AjnI	CCWGG	2 cut(s)	654, 800
AluBI	AGCT	5 cut(s)	25, 46, 55, 389, 542
AluI	AGCT	5 cut(s)	25, 46, 55, 389, 542
Alw21I	GWGCWC	3 cut(s)	325, 364, 416
Alw44I	GTGCAC	1 cut(s)	412
AlwI	GGATC	2 cut(s)	8, 365
AlwNI	CAGNNNCTG	1 cut(s)	509
AoxI	GGCC	3 cut(s)	30, 447, 685
ApaLI	GTGCAC	1 cut(s)	412
ApeKI	GCWGC	4 cut(s)	233, 236, 509, 539
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	163
AsuHPI	GGTGA	3 cut(s)	192, 737, 830
BaeGI	GKGCMC	2 cut(s)	381, 416
BalI	TGGCCA	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	3 cut(s)	325, 364, 416
BbvI	GCAGC	4 cut(s)	220, 223, 496, 551
BccI	CCATC	3 cut(s)	22, 425, 522
BciT130I	CCWGG	2 cut(s)	656, 802
BclI	TGATCA	2 cut(s)	679, 778
BcuI	ACTAGT	1 cut(s)	473
BfaI	CTAG	3 cut(s)	242, 474, 696
BfmI	CTRYAG	2 cut(s)	491, 813
BisI	GCNGC	7 cut(s)	114, 213, 234, 237, 510, 513, 540
BlpI	GCTNAGC	1 cut(s)	535
BlsI	GCNGC	7 cut(s)	115, 214, 235, 238, 511, 514, 541
Bme1390I	CCNGG	2 cut(s)	656, 802
BmiI	GGNNCC	2 cut(s)	10, 355
BmrFI	CCNGG	2 cut(s)	656, 802
BmsI	GCATC	7 cut(s)	182, 199, 302, 328, 341, 496, 652
BpiI	GAAGAC	1 cut(s)	432
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
Bpu1102I	GCTNAGC	1 cut(s)	535
BsaBI	GATNNNNATC	1 cut(s)	459
BsaJI	CCNNGG	4 cut(s)	135, 203, 654, 849
BsaXI	ACNNNNNCTCC	2 cut(s)	635, 665
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 574
Bse1I	ACTGG	1 cut(s)	568
Bse3DI	GCAATG	2 cut(s)	559, 682
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	2 cut(s)	656, 802
BseDI	CCNNGG	4 cut(s)	135, 203, 654, 849
BseGI	GGATG	2 cut(s)	214, 877
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	2 cut(s)	204, 574
BseMI	GCAATG	2 cut(s)	559, 682
BseMII	CTCAG	3 cut(s)	70, 598, 767
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	1 cut(s)	187
BseSI	GKGCMC	2 cut(s)	381, 416
BseXI	GCAGC	4 cut(s)	220, 223, 496, 551
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	3 cut(s)	32, 449, 687
BsiHKAI	GWGCWC	3 cut(s)	325, 364, 416
BslI	CCNNNNNNNGG	2 cut(s)	204, 574
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	3 cut(s)	32, 449, 687
Bsp1286I	GDGCHC	5 cut(s)	325, 358, 364, 381, 416
Bsp143I	GATC	6 cut(s)	13, 192, 370, 454, 679, 778
Bsp1720I	GCTNAGC	1 cut(s)	535
BspACI	CCGC	6 cut(s)	5, 113, 212, 315, 512, 711
BspANI	GGCC	3 cut(s)	32, 449, 687
BspCNI	CTCAG	3 cut(s)	69, 597, 766
BspFNI	CGCG	1 cut(s)	161
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	2 cut(s)	10, 355
BspPI	GGATC	2 cut(s)	8, 365
BspQI	GCTCTTC	1 cut(s)	313
BsrDI	GCAATG	2 cut(s)	559, 682
BsrI	ACTGG	1 cut(s)	568
BssECI	CCNNGG	4 cut(s)	135, 203, 654, 849
BssMI	GATC	6 cut(s)	13, 192, 370, 454, 679, 778
BssNAI	GTATAC	1 cut(s)	501
BssT1I	CCWWGG	3 cut(s)	135, 203, 849
Bst1107I	GTATAC	1 cut(s)	501
Bst2UI	CCWGG	2 cut(s)	656, 802
Bst4CI	ACNGT	2 cut(s)	310, 766
Bst6I	CTCTTC	2 cut(s)	102, 313
BstAPI	GCANNNNNTGC	2 cut(s)	329, 338
BstC8I	GCNNGC	4 cut(s)	111, 330, 412, 627
BstDEI	CTNAG	4 cut(s)	56, 535, 584, 753
BstF5I	GGATG	2 cut(s)	214, 877
BstFNI	CGCG	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	6 cut(s)	16, 195, 373, 457, 682, 781
BstMBI	GATC	6 cut(s)	13, 192, 370, 454, 679, 778
BstMWI	GCNNNNNNNGC	6 cut(s)	52, 158, 242, 329, 338, 353
BstNI	CCWGG	2 cut(s)	656, 802
BstSCI	CCNGG	2 cut(s)	654, 800
BstSFI	CTRYAG	2 cut(s)	491, 813
BstSLI	GKGCMC	2 cut(s)	381, 416
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	4 cut(s)	220, 223, 496, 551
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BstZ17I	GTATAC	1 cut(s)	501
BsuRI	GGCC	3 cut(s)	32, 449, 687
BtsCI	GGATG	2 cut(s)	214, 877
BtsIMutI	CAGTG	4 cut(s)	306, 575, 592, 832
Cac8I	GCNNGC	4 cut(s)	111, 330, 412, 627
CaiI	CAGNNNCTG	1 cut(s)	509
CciI	TCATGA	1 cut(s)	613
CfoI	GCGC	1 cut(s)	163
CseI	GACGC	2 cut(s)	167, 834
CviAII	CATG	3 cut(s)	614, 683, 784
DdeI	CTNAG	4 cut(s)	56, 535, 584, 753
DpnI	GATC	6 cut(s)	15, 194, 372, 456, 681, 780
DpnII	GATC	6 cut(s)	13, 192, 370, 454, 679, 778
DraIII	CACNNNGTG	1 cut(s)	312
DrdI	GACNNNNNNGTC	1 cut(s)	844
DseDI	GACNNNNNNGTC	1 cut(s)	844
EaeI	YGGCCR	2 cut(s)	30, 685
Eam1104I	CTCTTC	2 cut(s)	102, 313
EarI	CTCTTC	2 cut(s)	102, 313
Eco130I	CCWWGG	3 cut(s)	135, 203, 849
Eco24I	GRGCYC	1 cut(s)	358
EcoRII	CCWGG	2 cut(s)	654, 800
EcoT14I	CCWWGG	3 cut(s)	135, 203, 849
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	3 cut(s)	135, 203, 849
FaeI	CATG	3 cut(s)	617, 686, 787
FalI	AAGNNNNNCTT	1 cut(s)	867
FatI	CATG	3 cut(s)	613, 682, 783
FauNDI	CATATG	1 cut(s)	222
FbaI	TGATCA	2 cut(s)	679, 778
FblI	GTMKAC	1 cut(s)	500
Fnu4HI	GCNGC	7 cut(s)	114, 213, 234, 237, 510, 513, 540
FokI	GGATG	2 cut(s)	221, 884
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	7 cut(s)	114, 213, 234, 237, 510, 513, 540
FspBI	CTAG	3 cut(s)	242, 474, 696
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	7 cut(s)	114, 213, 234, 237, 510, 513, 540
HaeIII	GGCC	3 cut(s)	32, 449, 687
HgaI	GACGC	2 cut(s)	167, 834
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	3 cut(s)	617, 686, 787
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	2 cut(s)	227, 795
HphI	GGTGA	3 cut(s)	192, 737, 830
Hpy166II	GTNNAC	4 cut(s)	414, 501, 701, 830
Hpy188I	TCNGA	4 cut(s)	13, 298, 337, 794
Hpy188III	TCNNGA	5 cut(s)	365, 422, 464, 614, 776
Hpy8I	GTNNAC	4 cut(s)	414, 501, 701, 830
HpyAV	CCTTC	2 cut(s)	282, 716
HpyCH4III	ACNGT	2 cut(s)	310, 766
HpyCH4V	TGCA	6 cut(s)	332, 347, 414, 552, 573, 590
HpyF10VI	GCNNNNNNNGC	6 cut(s)	52, 158, 242, 329, 338, 353
HpyF3I	CTNAG	4 cut(s)	56, 535, 584, 753
Hsp92II	CATG	3 cut(s)	617, 686, 787
HspAI	GCGC	1 cut(s)	161
Ksp22I	TGATCA	2 cut(s)	679, 778
Kzo9I	GATC	6 cut(s)	13, 192, 370, 454, 679, 778
LguI	GCTCTTC	1 cut(s)	313
LmnI	GCTCC	3 cut(s)	353, 656, 853
Lsp1109I	GCAGC	4 cut(s)	220, 223, 496, 551
LweI	GCATC	7 cut(s)	182, 199, 302, 328, 341, 496, 652
MaeI	CTAG	3 cut(s)	242, 474, 696
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	6 cut(s)	15, 194, 372, 456, 681, 780
MboI	GATC	6 cut(s)	13, 192, 370, 454, 679, 778
MboII	GAAGA	9 cut(s)	89, 330, 380, 395, 437, 746, 872, 875, 887
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	5 cut(s)	325, 358, 364, 381, 416
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	4 cut(s)	251, 299, 591, 866
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	2 cut(s)	236, 789
MnlI	CCTC	2 cut(s)	208, 400
Mox20I	TGGCCA	1 cut(s)	32
MroXI	GAANNNNTTC	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	32
Msp20I	TGGCCA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	542
MspR9I	CCNGG	2 cut(s)	656, 802
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	2 cut(s)	656, 802
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	6 cut(s)	52, 158, 242, 329, 338, 353
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	6 cut(s)	13, 192, 370, 454, 679, 778
NlaIII	CATG	3 cut(s)	617, 686, 787
NlaIV	GGNNCC	2 cut(s)	10, 355
PagI	TCATGA	1 cut(s)	613
PciSI	GCTCTTC	1 cut(s)	313
PctI	GAATGC	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	390
PkrI	GCNGC	7 cut(s)	115, 214, 235, 238, 511, 514, 541
PleI	GAGTC	2 cut(s)	235, 789
PpsI	GAGTC	2 cut(s)	235, 789
Psp6I	CCWGG	2 cut(s)	654, 800
PspGI	CCWGG	2 cut(s)	654, 800
PspN4I	GGNNCC	2 cut(s)	10, 355
PstNI	CAGNNNCTG	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	542
SapI	GCTCTTC	1 cut(s)	313
SatI	GCNGC	7 cut(s)	114, 213, 234, 237, 510, 513, 540
Sau3AI	GATC	6 cut(s)	13, 192, 370, 454, 679, 778
SchI	GAGTC	2 cut(s)	236, 789
ScrFI	CCNGG	2 cut(s)	656, 802
SduI	GDGCHC	5 cut(s)	325, 358, 364, 381, 416
SfaNI	GCATC	7 cut(s)	182, 199, 302, 328, 341, 496, 652
SfcI	CTRYAG	2 cut(s)	491, 813
SpeI	ACTAGT	1 cut(s)	473
Sse9I	AATT	4 cut(s)	251, 299, 591, 866
SsiI	CCGC	6 cut(s)	5, 113, 212, 315, 512, 711
SspMI	CTAG	3 cut(s)	242, 474, 696
StyD4I	CCNGG	2 cut(s)	654, 800
StyI	CCWWGG	3 cut(s)	135, 203, 849
TaaI	ACNGT	2 cut(s)	310, 766
TaqI	TCGA	2 cut(s)	463, 660
TasI	AATT	4 cut(s)	251, 299, 591, 866
TauI	GCSGC	3 cut(s)	116, 215, 515
TscAI	CASTG	4 cut(s)	313, 575, 592, 832
TseI	GCWGC	4 cut(s)	233, 236, 509, 539
TspDTI	ATGAA	3 cut(s)	282, 602, 888
TspRI	CASTG	4 cut(s)	313, 575, 592, 832
VneI	GTGCAC	1 cut(s)	412
XmiI	GTMKAC	1 cut(s)	500
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	3 cut(s)	242, 474, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.