Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000110

Physical Location & Seq

Genomic Coordinates Reverse (-)

3902731 .. 3907629

Gene Structure 4899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0044300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGGAGAAGAAGAAGAGCAGCAACACCTATCCAATTCGCCTAACCCAGATACCGAAATTACGGAAAACCCAAGCCACCAGCAGCAAGAAGAAGAGTACTCATCATGGCCGGCGATTCGGTTCGATGTTCCTCCACAGAGAACCTACCACTTCTCCCAGCAGTTCAGAACTCCCTCAAAACCTAACAATTTTCTCAAGGCCGTCAAATGGTCGCCGGATGGTTCTTGCTTTCTCACCAGTTCTGAGGACAACACCCTCCGTGTTTTCGCAATACCGGAAAGTGGGAATGAATATGTTAACGGCTATTCTGCGCCTTCTGATGAAGACTCCTATGCTGCGAGCCTTGTTATCAATGAGGGAGAGTCGGTATATGACTATTGTTGGTACCCTTACATGTCTGCTTCAGACCCAGTTACCTGTGTTTTCGCAAGTACAGCTCGTGATCATCCGATTCATCTTTGGGATGCTTCTTCTGGTCAGCTACGTTGCACGTACCGTGCTTATGATGCTGTGGATGAAATCACAGCTGCCTTTTCAATTGCCTTTAATCCCAGTGGAACAAAGATTTTTGCTGGATACAACAAACTAGTCAGGGTGTTTGATTTACATCGCCCTGGTAGAGATTACAACCAGTATTCGACGGTTCAAGGAAATAAAGAAGGCCAAACAGGTATAATGTCTGCAATGGCTTTTTCTCCAACCCATAATGGAATGCTAGCTATAGGCTCTTACAGCAAGACTACTGCAATATATAGAGAAGATAATATGGAACTTTTATATGTATTACATGGACATGAAGGTGGGATTACACATGTCCAGTTCTCAAAGGATGGAAATTACTTGTATACTGGAGGTCGGAAGGATCCTTATATACTATGCTGGGATATACGCAAATCTGTTGATGTTGTCTACAAGTTATATAGGTCTGCAGAACATACCAACCAGCGGATTCTGTTTGATATTGAGCCACTTGGCCGCCATCTTTGTACAGGTGGTCAGGATGGTTTTGTTCATATATATGATCTTCAAACTGGACAATGGGTGTCCGGCTTCCAAGCTGCATTGGATACTGTTAATGGATTCTCTTTTCATCCCTTTCTGCCAATGGCTACAACTTCTTCGGGCCACCGAAGATTTCTTCCTCCTGATGATGGCATTGACGAATTGCATTTGAGTGGTCATGAAAATTGTGCTTCTGTGTGGAGTTTCTCTGTTGCTTCAATGGAAGAGAACGTTGTTGAAATTAATGGCGATGATCACAACAGCCAGAACCGGCTCCAGAATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019905 GO:0031090 GO:0031201 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNAP

Protein Analysis

429

Amino Acids

48.31

Weight (kDa)

5.0

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	65 - 299	6.2e-20	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	66 - 203	5.5e-06	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	135 - 299	2.9e-13	Echinoderm microtubule-associated protein second beta-propeller
EIF3I	PF24805	138 - 296	7.8e-06	EIF3I
WD40_Prp19	PF24814	140 - 369	1.3e-15	Prp19 WD40 domain
Beta-prop_EML	PF23409	142 - 296	2e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40_WDHD1_1st	PF24817	145 - 302	2.3e-08	WDHD1 first WD40 domain
WD40_CDC20-Fz	PF24807	148 - 313	5.6e-08	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	210 - 366	1.3e-14	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	221 - 374	9e-17	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	222 - 368	1.2e-10	CDC20/Fizzy WD40 domain
WDR55	PF24796	227 - 363	4.7e-09	WDR55
Beta-prop_TEP1_2nd	PF25047	240 - 354	5.4e-10	TEP-1 second beta-propeller
WD40	PF00400	257 - 295	6.3e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07040
fragaria_vesca	FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica	MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica	Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis	pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis	RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata	RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora	Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii	Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa	Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha	Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana	Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	384
AccB1I	GGYRCC	1 cut(s)	384
AccI	GTMKAC	2 cut(s)	845, 909
AciI	CCGC	2 cut(s)	946, 976
AclI	AACGTT	1 cut(s)	1233
AclWI	GGATC	2 cut(s)	857, 870
AcoI	YGGCCR	2 cut(s)	107, 973
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	5 cut(s)	98, 386, 433, 494, 988
AfiI	CCNNNNNNNGG	4 cut(s)	207, 281, 945, 1151
AflIII	ACRYGT	2 cut(s)	393, 811
AgsI	TTSAA	5 cut(s)	537, 647, 1028, 1221, 1241
AhlI	ACTAGT	1 cut(s)	586
AjnI	CCWGG	1 cut(s)	613
AluBI	AGCT	5 cut(s)	437, 481, 527, 719, 1058
AluI	AGCT	5 cut(s)	437, 481, 527, 719, 1058
AlwI	GGATC	2 cut(s)	857, 870
AlwNI	CAGNNNCTG	1 cut(s)	1285
AoxI	GGCC	5 cut(s)	107, 198, 661, 973, 1123
ApeKI	GCWGC	5 cut(s)	19, 82, 335, 527, 1058
AseI	ATTAAT	1 cut(s)	1245
Asp718I	GGTACC	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	1123
AsuHPI	GGTGA	1 cut(s)	226
AsuNHI	GCTAGC	1 cut(s)	715
BamHI	GGATCC	1 cut(s)	862
BanI	GGYRCC	1 cut(s)	384
BauI	CACGAG	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	330
BbvI	GCAGC	5 cut(s)	31, 94, 322, 514, 1045
BccI	CCATC	5 cut(s)	212, 824, 987, 995, 1145
BceAI	ACGGC	2 cut(s)	185, 316
BciT130I	CCWGG	1 cut(s)	615
BciVI	GTATCC	2 cut(s)	569, 1060
BclI	TGATCA	2 cut(s)	442, 1255
BcuI	ACTAGT	1 cut(s)	586
BfaI	CTAG	2 cut(s)	587, 716
BfmI	CTRYAG	3 cut(s)	720, 927, 1286
BfuI	GTATCC	2 cut(s)	569, 1060
BisI	GCNGC	6 cut(s)	20, 83, 336, 528, 976, 1059
BlsI	GCNGC	6 cut(s)	21, 84, 337, 529, 977, 1060
BmcAI	AGTACT	1 cut(s)	98
Bme1390I	CCNGG	1 cut(s)	615
BmgT120I	GGNCC	1 cut(s)	1123
BmiI	GGNNCC	3 cut(s)	386, 864, 1277
BmrFI	CCNGG	1 cut(s)	615
BmrI	ACTGGG	2 cut(s)	404, 546
BmsI	GCATC	2 cut(s)	454, 496
BmtI	GCTAGC	1 cut(s)	719
BmuI	ACTGGG	2 cut(s)	404, 546
BpiI	GAAGAC	1 cut(s)	330
BpmI	CTGGAG	2 cut(s)	870, 1262
BpuEI	CTTGAG	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	492
BsaBI	GATNNNNATC	1 cut(s)	606
BsaJI	CCNNGG	1 cut(s)	613
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 351, 381
Bsc4I	CCNNNNNNNGG	4 cut(s)	207, 281, 945, 1151
Bse118I	RCCGGY	2 cut(s)	109, 1272
Bse1I	ACTGG	7 cut(s)	237, 410, 552, 631, 817, 853, 1036
Bse3DI	GCAATG	1 cut(s)	690
Bse8I	GATNNNNATC	1 cut(s)	606
BseBI	CCWGG	1 cut(s)	615
BseDI	CCNNGG	1 cut(s)	613
BseGI	GGATG	7 cut(s)	223, 445, 469, 520, 835, 1006, 1090
BseJI	GATNNNNATC	1 cut(s)	606
BseLI	CCNNNNNNNGG	4 cut(s)	207, 281, 945, 1151
BseMI	GCAATG	1 cut(s)	690
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	7 cut(s)	237, 410, 552, 631, 817, 853, 1036
BseXI	GCAGC	5 cut(s)	31, 94, 322, 514, 1045
BseYI	CCCAGC	2 cut(s)	156, 879
BshFI	GGCC	5 cut(s)	109, 200, 663, 975, 1125
BshNI	GGYRCC	1 cut(s)	384
BsiSI	CCGG	5 cut(s)	110, 215, 275, 1047, 1273
BslI	CCNNNNNNNGG	4 cut(s)	207, 281, 945, 1151
BsmI	GAATGC	1 cut(s)	717
BsnI	GGCC	5 cut(s)	109, 200, 663, 975, 1125
Bsp1407I	TGTACA	1 cut(s)	986
Bsp143I	GATC	4 cut(s)	442, 862, 1021, 1255
BspACI	CCGC	2 cut(s)	946, 976
BspANI	GGCC	5 cut(s)	109, 200, 663, 975, 1125
BspCNI	CTCAG	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	1180
BspLI	GGNNCC	3 cut(s)	386, 864, 1277
BspMAI	CTGCAG	1 cut(s)	931
BspOI	GCTAGC	1 cut(s)	719
BspPI	GGATC	2 cut(s)	857, 870
BspQI	GCTCTTC	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	690
BsrFI	RCCGGY	2 cut(s)	109, 1272
BsrGI	TGTACA	1 cut(s)	986
BsrI	ACTGG	7 cut(s)	237, 410, 552, 631, 817, 853, 1036
BssAI	RCCGGY	2 cut(s)	109, 1272
BssECI	CCNNGG	1 cut(s)	613
BssMI	GATC	4 cut(s)	442, 862, 1021, 1255
BssNAI	GTATAC	1 cut(s)	846
BssSI	CACGAG	1 cut(s)	438
Bst1107I	GTATAC	1 cut(s)	846
Bst2BI	CACGAG	1 cut(s)	438
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	3 cut(s)	497, 643, 1072
Bst6I	CTCTTC	3 cut(s)	9, 87, 1221
BstAUI	TGTACA	1 cut(s)	986
BstBAI	YACGTR	1 cut(s)	492
BstC8I	GCNNGC	3 cut(s)	111, 340, 717
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	7 cut(s)	223, 445, 469, 520, 835, 1006, 1090
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	4 cut(s)	445, 865, 1024, 1258
BstMBI	GATC	4 cut(s)	442, 862, 1021, 1255
BstMWI	GCNNNNNNNGC	3 cut(s)	434, 506, 732
BstNI	CCWGG	1 cut(s)	615
BstNSI	RCATGY	2 cut(s)	397, 815
BstSCI	CCNGG	1 cut(s)	613
BstSFI	CTRYAG	3 cut(s)	720, 927, 1286
BstV1I	GCAGC	5 cut(s)	31, 94, 322, 514, 1045
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	862
BstZ17I	GTATAC	1 cut(s)	846
BsuI	GTATCC	2 cut(s)	569, 1060
BsuRI	GGCC	5 cut(s)	109, 200, 663, 975, 1125
BtgZI	GCGATG	2 cut(s)	593, 1266
BtsCI	GGATG	7 cut(s)	223, 445, 469, 520, 835, 1006, 1090
BtsIMutI	CAGTG	1 cut(s)	559
Cac8I	GCNNGC	3 cut(s)	111, 340, 717
CaiI	CAGNNNCTG	1 cut(s)	1285
CciI	TCATGA	1 cut(s)	1180
CfoI	GCGC	1 cut(s)	313
Cfr10I	RCCGGY	2 cut(s)	109, 1272
Cfr13I	GGNCC	1 cut(s)	1123
Csp6I	GTAC	5 cut(s)	97, 385, 432, 493, 987
CviAII	CATG	6 cut(s)	105, 394, 788, 794, 812, 1181
CviQI	GTAC	5 cut(s)	97, 385, 432, 493, 987
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	4 cut(s)	444, 864, 1023, 1257
DpnII	GATC	4 cut(s)	442, 862, 1021, 1255
EaeI	YGGCCR	2 cut(s)	107, 973
Eam1104I	CTCTTC	3 cut(s)	9, 87, 1221
EarI	CTCTTC	3 cut(s)	9, 87, 1221
Eco57I	CTGAAG	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	613
FaeI	CATG	6 cut(s)	108, 397, 791, 797, 815, 1184
FatI	CATG	6 cut(s)	104, 393, 787, 793, 811, 1180
FbaI	TGATCA	2 cut(s)	442, 1255
FblI	GTMKAC	2 cut(s)	845, 909
Fnu4HI	GCNGC	6 cut(s)	20, 83, 336, 528, 976, 1059
FokI	GGATG	7 cut(s)	230, 432, 476, 527, 842, 1013, 1077
Fsp4HI	GCNGC	6 cut(s)	20, 83, 336, 528, 976, 1059
FspBI	CTAG	2 cut(s)	587, 716
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	6 cut(s)	20, 83, 336, 528, 976, 1059
GsaI	CCCAGC	2 cut(s)	160, 883
GsuI	CTGGAG	2 cut(s)	870, 1262
HaeIII	GGCC	5 cut(s)	109, 200, 663, 975, 1125
HapII	CCGG	5 cut(s)	110, 215, 275, 1047, 1273
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	6 cut(s)	108, 397, 791, 797, 815, 1184
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	7 cut(s)	115, 326, 362, 451, 949, 1080, 1282
HpaI	GTTAAC	1 cut(s)	298
HpaII	CCGG	5 cut(s)	110, 215, 275, 1047, 1273
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	3 cut(s)	298, 846, 910
Hpy188I	TCNGA	6 cut(s)	167, 244, 319, 406, 450, 858
Hpy188III	TCNNGA	5 cut(s)	440, 998, 1145, 1181, 1279
Hpy8I	GTNNAC	3 cut(s)	298, 846, 910
Hpy99I	CGWCG	1 cut(s)	643
HpyAV	CCTTC	4 cut(s)	324, 653, 791, 853
HpyCH4III	ACNGT	3 cut(s)	497, 643, 1072
HpyCH4IV	ACGT	3 cut(s)	484, 491, 1233
HpyCH4V	TGCA	6 cut(s)	489, 683, 746, 929, 1061, 1168
HpyF10VI	GCNNNNNNNGC	3 cut(s)	434, 506, 732
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	3 cut(s)	484, 491, 1233
Hsp92II	CATG	6 cut(s)	108, 397, 791, 797, 815, 1184
HspAI	GCGC	1 cut(s)	311
KpnI	GGTACC	1 cut(s)	388
KroI	GCCGGC	1 cut(s)	109
KroNI	GCCGGC	1 cut(s)	111
Ksp22I	TGATCA	2 cut(s)	442, 1255
KspAI	GTTAAC	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	442, 862, 1021, 1255
LguI	GCTCTTC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	1281
Lsp1109I	GCAGC	5 cut(s)	31, 94, 322, 514, 1045
LweI	GCATC	2 cut(s)	454, 496
MaeI	CTAG	2 cut(s)	587, 716
MaeII	ACGT	3 cut(s)	484, 491, 1233
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	4 cut(s)	444, 864, 1023, 1257
MboI	GATC	4 cut(s)	442, 862, 1021, 1255
MfeI	CAATTG	1 cut(s)	537
MflI	RGATCY	1 cut(s)	862
MluCI	AATT	8 cut(s)	34, 57, 187, 537, 835, 1163, 1186, 1242
MlyI	GAGTC	2 cut(s)	320, 371
MmeI	TCCRAC	2 cut(s)	722, 836
MnlI	CCTC	7 cut(s)	141, 184, 238, 266, 349, 845, 1152
MroNI	GCCGGC	1 cut(s)	109
MseI	TTAA	4 cut(s)	297, 546, 1074, 1245
MslI	CAYNNNNRTG	4 cut(s)	792, 798, 1017, 1173
MspA1I	CMGCKG	2 cut(s)	527, 946
MspI	CCGG	5 cut(s)	110, 215, 275, 1047, 1273
MspR9I	CCNGG	1 cut(s)	615
MunI	CAATTG	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	717
MvaI	CCWGG	1 cut(s)	615
MwoI	GCNNNNNNNGC	3 cut(s)	434, 506, 732
NaeI	GCCGGC	1 cut(s)	111
NdeII	GATC	4 cut(s)	442, 862, 1021, 1255
NgoMIV	GCCGGC	1 cut(s)	109
NheI	GCTAGC	1 cut(s)	715
NlaIII	CATG	6 cut(s)	108, 397, 791, 797, 815, 1184
NlaIV	GGNNCC	3 cut(s)	386, 864, 1277
NspI	RCATGY	2 cut(s)	397, 815
PagI	TCATGA	1 cut(s)	1180
PciI	ACATGT	2 cut(s)	393, 811
PciSI	GCTCTTC	1 cut(s)	9
PctI	GAATGC	1 cut(s)	717
PdiI	GCCGGC	1 cut(s)	111
PfeI	GAWTC	5 cut(s)	115, 451, 949, 1080, 1282
PkrI	GCNGC	6 cut(s)	21, 84, 337, 529, 977, 1060
PleI	GAGTC	2 cut(s)	320, 370
PpsI	GAGTC	2 cut(s)	320, 370
Ppu21I	YACGTR	1 cut(s)	492
PscI	ACATGT	2 cut(s)	393, 811
PshBI	ATTAAT	1 cut(s)	1245
Psp1406I	AACGTT	1 cut(s)	1233
Psp6I	CCWGG	1 cut(s)	613
PspFI	CCCAGC	2 cut(s)	156, 879
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	3 cut(s)	386, 864, 1277
PspPI	GGNCC	1 cut(s)	1123
PstI	CTGCAG	1 cut(s)	931
PstNI	CAGNNNCTG	1 cut(s)	1285
PsuI	RGATCY	1 cut(s)	862
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	5 cut(s)	98, 386, 433, 494, 988
RsaNI	GTAC	5 cut(s)	97, 385, 432, 493, 987
RseI	CAYNNNNRTG	4 cut(s)	792, 798, 1017, 1173
SapI	GCTCTTC	1 cut(s)	9
SaqAI	TTAA	4 cut(s)	297, 546, 1074, 1245
SatI	GCNGC	6 cut(s)	20, 83, 336, 528, 976, 1059
Sau3AI	GATC	4 cut(s)	442, 862, 1021, 1255
Sau96I	GGNCC	1 cut(s)	1123
ScaI	AGTACT	1 cut(s)	98
SchI	GAGTC	2 cut(s)	320, 371
ScrFI	CCNGG	1 cut(s)	615
SfaNI	GCATC	2 cut(s)	454, 496
SfcI	CTRYAG	3 cut(s)	720, 927, 1286
SmiMI	CAYNNNNRTG	4 cut(s)	792, 798, 1017, 1173
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SpeI	ACTAGT	1 cut(s)	586
Sse9I	AATT	8 cut(s)	34, 57, 187, 537, 835, 1163, 1186, 1242
SsiI	CCGC	2 cut(s)	946, 976
SspMI	CTAG	2 cut(s)	587, 716
StyD4I	CCNGG	1 cut(s)	613
TaaI	ACNGT	3 cut(s)	497, 643, 1072
TaiI	ACGT	3 cut(s)	487, 494, 1236
TaqI	TCGA	2 cut(s)	123, 638
TasI	AATT	8 cut(s)	34, 57, 187, 537, 835, 1163, 1186, 1242
TatI	WGTACW	3 cut(s)	96, 431, 986
TauI	GCSGC	1 cut(s)	978
TfiI	GAWTC	5 cut(s)	115, 451, 949, 1080, 1282
Tru1I	TTAA	4 cut(s)	297, 546, 1074, 1245
Tru9I	TTAA	4 cut(s)	297, 546, 1074, 1245
TscAI	CASTG	1 cut(s)	559
TseI	GCWGC	5 cut(s)	19, 82, 335, 527, 1058
TspDTI	ATGAA	8 cut(s)	303, 336, 443, 531, 810, 1001, 1079, 1197
TspGWI	ACGGA	2 cut(s)	77, 248
TspRI	CASTG	1 cut(s)	559
VspI	ATTAAT	1 cut(s)	1245
XceI	RCATGY	2 cut(s)	397, 815
XmiI	GTMKAC	2 cut(s)	845, 909
XspI	CTAG	2 cut(s)	587, 716
ZrmI	AGTACT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.