Rh2BG381100

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
53827904 .. 53828710
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG381100.1

Sequence Viewer

Length: 807 bp
ATGTACCGTTACACTGATGATTTTCTTGGGTTTAGATTTGTCAAAGGGATAAGAGTACCGGTGGATGTTAGTCAATTAAATAAATTGCAAGTTTTGTCATGTGTTGAGGCAGAAGGAGACACTATTAGGCAGGTCGGTTGTATGACCCAACTTATAAGGATTGGAATTACTAATGTTAAAGAAAGTGACGAGATGCACCTGTGTGACAGCATTCAAAAGTTGCTGCTCCTTCACTACTTGTTTCTAATGTCAAGTGATGAAGAGGAGATTCTTCGAACAAATGCACTATGTTCACCTCCTCCCCTACTTCGAGTGGTTATTTTGGTTGGCCGACTGGAGAATGTACCACTTTGGTTTCATTCACTTTGGAGCCTCGCACATCTGTATCTGCATTGGTCTAAACTTGAAGAAAATTTAGTACCTCACATTGAAGCACTGCCGAATCTGGGATATCTTACCCTTGTTAATGCATATGTTGGGAAACAGCTGTATTTTCGCAGAGGCTTTGTAAAGCTAAAAAAGCTGGAATTATATAATCATCCCTTGTTGACAAAAATAACTATAGAAAATGGGGTGATGCCAAATCTCCATGACTTGCATGTTGAGAGCTGCATGTCATTAAAGACATTGCCACTGGGTCTTGAATACCTTGCTAATCTTCAAAAGTTGACATTAGAGACGGTTCCAAAAAAAATTATATTGCCCATTAGAAAAGGAGCTGTGGATCGTCGAAAAGTTCAACACATCCCTGAAATCCTCTATTTTTATGAAGAGTCATCTATGAGGTTCTATGAAATATTGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

268

Amino Acids

31.1

Weight (kDa)

7.69

Isoelectric Point (pI)

56.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 14 - 226 1.9e-20 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 155
Acc36I ACCTGC 1 cut(s) 121
AclWI GGATC 1 cut(s) 732
AcoI YGGCCR 1 cut(s) 328
AcsI RAATTY 1 cut(s) 412
AfaI GTAC 4 cut(s) 5, 57, 345, 420
AfiI CCNNNNNNNGG 1 cut(s) 446
AgeI ACCGGT 1 cut(s) 58
AgsI TTSAA 6 cut(s) 215, 407, 431, 644, 662, 740
AleI CACNNNNGTG 1 cut(s) 201
AluBI AGCT 5 cut(s) 487, 514, 523, 609, 719
AluI AGCT 5 cut(s) 487, 514, 523, 609, 719
Alw26I GTCTC 2 cut(s) 111, 671
AlwI GGATC 1 cut(s) 732
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 2 cut(s) 223, 609
ApoI RAATTY 1 cut(s) 412
AsiGI ACCGGT 1 cut(s) 58
AsuHPI GGTGA 2 cut(s) 285, 586
AsuII TTCGAA 1 cut(s) 274
BaeI ACNNNNGTAYC 2 cut(s) 368, 401
BbvI GCAGC 2 cut(s) 210, 596
BcoDI GTCTC 2 cut(s) 111, 671
BfaI CTAG 1 cut(s) 805
BfmI CTRYAG 1 cut(s) 561
BfuAI ACCTGC 1 cut(s) 121
BisI GCNGC 2 cut(s) 224, 610
BlsI GCNGC 2 cut(s) 225, 611
BmiI GGNNCC 2 cut(s) 371, 684
BmrI ACTGGG 1 cut(s) 644
BmsI GCATC 2 cut(s) 183, 567
BmuI ACTGGG 1 cut(s) 644
BpmI CTGGAG 1 cut(s) 356
Bpu14I TTCGAA 1 cut(s) 274
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 2 cut(s) 339, 639
Bse3DI GCAATG 1 cut(s) 626
BseGI GGATG 3 cut(s) 70, 538, 744
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMI GCAATG 1 cut(s) 626
BseNI ACTGG 2 cut(s) 339, 639
BseRI GAGGAG 2 cut(s) 278, 288
BseXI GCAGC 2 cut(s) 210, 596
BshFI GGCC 1 cut(s) 330
BshTI ACCGGT 1 cut(s) 58
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 2 cut(s) 111, 671
BsmBI CGTCTC 1 cut(s) 671
BsmI GAATGC 1 cut(s) 210
BsnI GGCC 1 cut(s) 330
Bsp119I TTCGAA 1 cut(s) 274
Bsp143I GATC 1 cut(s) 724
BspANI GGCC 1 cut(s) 330
BspLI GGNNCC 2 cut(s) 371, 684
BspMI ACCTGC 1 cut(s) 121
BspPI GGATC 1 cut(s) 732
BspT104I TTCGAA 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 626
BsrFI RCCGGY 1 cut(s) 58
BsrI ACTGG 2 cut(s) 339, 639
BssAI RCCGGY 1 cut(s) 58
BssMI GATC 1 cut(s) 724
Bst4CI ACNGT 2 cut(s) 8, 682
Bst6I CTCTTC 2 cut(s) 255, 765
BstBI TTCGAA 1 cut(s) 274
BstF5I GGATG 3 cut(s) 70, 538, 744
BstKTI GATC 1 cut(s) 727
BstMAI GTCTC 2 cut(s) 111, 671
BstMBI GATC 1 cut(s) 724
BstMWI GCNNNNNNNGC 1 cut(s) 520
BstNSI RCATGY 2 cut(s) 602, 616
BstSFI CTRYAG 1 cut(s) 561
BstV1I GCAGC 2 cut(s) 210, 596
BsuRI GGCC 1 cut(s) 330
BtsCI GGATG 3 cut(s) 70, 538, 744
BtsI GCAGTG 1 cut(s) 434
BtsIMutI CAGTG 3 cut(s) 12, 434, 632
BveI ACCTGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 58
Csp6I GTAC 4 cut(s) 4, 56, 344, 419
CspAI ACCGGT 1 cut(s) 58
CviAII CATG 4 cut(s) 99, 590, 599, 613
CviJI RGCY 8 cut(s) 330, 372, 487, 504, 514, 523, 609, 719
CviKI_1 RGCY 8 cut(s) 330, 372, 487, 504, 514, 523, 609, 719
CviQI GTAC 4 cut(s) 4, 56, 344, 419
DpnI GATC 1 cut(s) 726
DpnII GATC 1 cut(s) 724
EaeI YGGCCR 1 cut(s) 328
Eam1104I CTCTTC 2 cut(s) 255, 765
EarI CTCTTC 2 cut(s) 255, 765
Eco32I GATATC 1 cut(s) 452
EcoRV GATATC 1 cut(s) 452
EcoT22I ATGCAT 1 cut(s) 472
Esp3I CGTCTC 1 cut(s) 671
FaeI CATG 4 cut(s) 102, 593, 602, 616
FatI CATG 4 cut(s) 98, 589, 598, 612
FauNDI CATATG 1 cut(s) 472
Fnu4HI GCNGC 2 cut(s) 224, 610
FokI GGATG 3 cut(s) 77, 525, 731
Fsp4HI GCNGC 2 cut(s) 224, 610
FspBI CTAG 1 cut(s) 805
GluI GCNGC 2 cut(s) 224, 610
GsuI CTGGAG 1 cut(s) 356
HaeIII GGCC 1 cut(s) 330
HapII CCGG 1 cut(s) 59
Hin1II CATG 4 cut(s) 102, 593, 602, 616
HincII GTYRAC 2 cut(s) 549, 669
HindII GTYRAC 2 cut(s) 549, 669
HinfI GANTC 3 cut(s) 268, 442, 773
HpaII CCGG 1 cut(s) 59
HphI GGTGA 2 cut(s) 285, 586
Hpy166II GTNNAC 3 cut(s) 293, 549, 669
Hpy188III TCNNGA 1 cut(s) 641
Hpy8I GTNNAC 3 cut(s) 293, 549, 669
Hpy99I CGWCG 1 cut(s) 732
HpyAV CCTTC 2 cut(s) 107, 239
HpyCH4III ACNGT 2 cut(s) 8, 682
HpyCH4V TGCA 7 cut(s) 88, 196, 284, 391, 470, 598, 612
HpyF10VI GCNNNNNNNGC 1 cut(s) 520
Hsp92II CATG 4 cut(s) 102, 593, 602, 616
Kzo9I GATC 1 cut(s) 724
LmnI GCTCC 3 cut(s) 231, 369, 716
LpnPI CCDG 8 cut(s) 72, 116, 212, 320, 431, 509, 620, 762
Lsp1109I GCAGC 2 cut(s) 210, 596
LweI GCATC 2 cut(s) 183, 567
MaeI CTAG 1 cut(s) 805
MaeIII GTNAC 3 cut(s) 8, 185, 203
MalI GATC 1 cut(s) 726
MboI GATC 1 cut(s) 724
MboII GAAGA 5 cut(s) 263, 272, 419, 650, 782
MluCI AATT 6 cut(s) 74, 83, 165, 412, 527, 693
MlyI GAGTC 1 cut(s) 782
MnlI CCTC 9 cut(s) 100, 256, 306, 309, 383, 432, 494, 767, 777
Mph1103I ATGCAT 1 cut(s) 472
MseI TTAA 4 cut(s) 77, 177, 465, 620
MslI CAYNNNNRTG 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 487
MspI CCGG 1 cut(s) 59
Mva1269I GAATGC 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 520
NdeI CATATG 1 cut(s) 472
NdeII GATC 1 cut(s) 724
NlaIII CATG 4 cut(s) 102, 593, 602, 616
NlaIV GGNNCC 2 cut(s) 371, 684
NmuCI GTSAC 2 cut(s) 185, 203
NsiI ATGCAT 1 cut(s) 472
NspI RCATGY 2 cut(s) 602, 616
NspV TTCGAA 1 cut(s) 274
OliI CACNNNNGTG 1 cut(s) 201
PctI GAATGC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 268, 442
PinAI ACCGGT 1 cut(s) 58
PkrI GCNGC 2 cut(s) 225, 611
PleI GAGTC 1 cut(s) 781
PpsI GAGTC 1 cut(s) 781
PsiI TTATAA 1 cut(s) 155
PspN4I GGNNCC 2 cut(s) 371, 684
PvuII CAGCTG 1 cut(s) 487
RsaI GTAC 4 cut(s) 5, 57, 345, 420
RsaNI GTAC 4 cut(s) 4, 56, 344, 419
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 4 cut(s) 77, 177, 465, 620
SatI GCNGC 2 cut(s) 224, 610
Sau3AI GATC 1 cut(s) 724
SchI GAGTC 1 cut(s) 782
SfaNI GCATC 2 cut(s) 183, 567
SfcI CTRYAG 1 cut(s) 561
SfuI TTCGAA 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 6 cut(s) 74, 83, 165, 412, 527, 693
SspI AATATT 1 cut(s) 798
SspMI CTAG 1 cut(s) 805
TaaI ACNGT 2 cut(s) 8, 682
TaqI TCGA 3 cut(s) 274, 310, 730
TasI AATT 6 cut(s) 74, 83, 165, 412, 527, 693
TfiI GAWTC 2 cut(s) 268, 442
Tru1I TTAA 4 cut(s) 77, 177, 465, 620
Tru9I TTAA 4 cut(s) 77, 177, 465, 620
TscAI CASTG 3 cut(s) 19, 441, 639
TseFI GTSAC 2 cut(s) 185, 203
TseI GCWGC 2 cut(s) 223, 609
Tsp45I GTSAC 2 cut(s) 185, 203
TspDTI ATGAA 4 cut(s) 273, 347, 783, 807
TspRI CASTG 3 cut(s) 19, 441, 639
XapI RAATTY 1 cut(s) 412
XceI RCATGY 2 cut(s) 602, 616
XspI CTAG 1 cut(s) 805
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.