Rh5BG132100

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000110
Physical Location & Seq
Reverse (-)
13006766 .. 13007999
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG132100.1

Sequence Viewer

Length: 888 bp
ATGGCCTTTTCTGCAACGGATCTCTTAATTGGAAAACTTGTGACAATTCTTGAGAACGAAGGAACAACAATAGCTGGTGTTCGTGATGAAGTTGACAAGATTAAGCTGGAGCTTCTAAGCATGAAAGCTTTCCTGGAGGATGCGGAGGCCAACAAAGCAAAAACTGAAGGAGAGAAATTGTGGGTTGCAAGCATCAGAGACTTAGCCTATGGTGTTGAAGATATCATTGATGAATTCATGTATCACATGTATGAGAAGCAAAGTGGGAGAAGAGTACTATCAAGGAGGCTACACATGACCATTTGCATTCCAAAAACTCTTTGGTTTAGACGGAAAACTGCACAGAGGTTAAAAAAAATCACTGAAAAGATCAAAGACATTTCTGAGAGGAATCAAAGGTACGATGTTGGCCATGTAGGAGGAACAAGTACTTCTGAAGATATTCACAAATGGGTGCAGAACCAAGCCGACTCTTCTTTTTTCATTATGGAAGAGGAACTGGTTGGGATTGAAGGCCAGAAGCAAATACTAATGGGGTGGTTGATGGATGAAGTGCAACACCAAACTGTTATCTCTGTGGTTGGGATGGGAGGTTCTGGAAAGACAACTCTGGTTGCCAAGACCTTCACCAACGAAAGGGTAAAGAGACATTTCGATTGTTGTGCGTGGATTACCGTCTCCCAAACTTATGCTGTGGTAGACTTGCTTCGAAGCTTGATTATGGAACTCCACAAATCAAGAAAGGAAGGTTTCCCTGAAAATTTGAATGCGATGAGCCACAGAGAATTGCTAGAGTTACTGACGAACTACTTGGGGTCTAAAAAGTACCTTGTTGTTCTAGATGACGTGTGGGAGATAAGAGTTTGGAGAGAAATAAAGACCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

295

Amino Acids

34.0

Weight (kDa)

6.73

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 8 - 89 3.7e-23 Rx N-terminal domain
NB-ARC PF00931 173 - 293 5e-29 NB-ARC domain
AAA_16 PF13191 186 - 283 7.8e-06 AAA ATPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 699
AciI CCGC 1 cut(s) 143
AclWI GGATC 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 409
AcsI RAATTY 2 cut(s) 233, 760
AcuI CTGAAG 2 cut(s) 186, 456
AfaI GTAC 4 cut(s) 276, 401, 430, 827
AfiI CCNNNNNNNGG 1 cut(s) 636
AflIII ACRYGT 2 cut(s) 246, 846
AgsI TTSAA 3 cut(s) 218, 512, 766
AjiI CACGTC 1 cut(s) 847
AjnI CCWGG 1 cut(s) 132
AloI GAACNNNNNNTCC 2 cut(s) 577, 609
AluBI AGCT 5 cut(s) 74, 106, 112, 128, 714
AluI AGCT 5 cut(s) 74, 106, 112, 128, 714
Alw26I GTCTC 3 cut(s) 192, 640, 682
AlwI GGATC 1 cut(s) 27
AoxI GGCC 4 cut(s) 3, 147, 409, 514
ApoI RAATTY 2 cut(s) 233, 760
Asp700I GAANNNNTTC 2 cut(s) 128, 441
AsuHPI GGTGA 1 cut(s) 619
AsuII TTCGAA 1 cut(s) 709
BalI TGGCCA 1 cut(s) 411
BarI GAAGNNNNNNTAC 2 cut(s) 690, 722
BccI CCATC 2 cut(s) 538, 580
BcgI CGANNNNNNTGC 2 cut(s) 644, 678
BciT130I CCWGG 1 cut(s) 134
BcoDI GTCTC 3 cut(s) 192, 640, 682
BfaI CTAG 2 cut(s) 791, 839
BmcAI AGTACT 2 cut(s) 276, 430
Bme1390I CCNGG 1 cut(s) 134
BmgBI CACGTC 1 cut(s) 847
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 2 cut(s) 130, 201
BpmI CTGGAG 2 cut(s) 128, 155
Bpu14I TTCGAA 1 cut(s) 709
BpuEI CTTGAG 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 636
Bse1I ACTGG 1 cut(s) 504
BseBI CCWGG 1 cut(s) 134
BseGI GGATG 3 cut(s) 145, 553, 591
BseLI CCNNNNNNNGG 1 cut(s) 636
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 1 cut(s) 504
BsgI GTGCAG 2 cut(s) 324, 476
BshFI GGCC 4 cut(s) 5, 149, 411, 516
BslI CCNNNNNNNGG 1 cut(s) 636
BsmAI GTCTC 3 cut(s) 192, 640, 682
BsmBI CGTCTC 1 cut(s) 682
BsmI GAATGC 2 cut(s) 306, 772
BsnI GGCC 4 cut(s) 5, 149, 411, 516
Bsp119I TTCGAA 1 cut(s) 709
Bsp143I GATC 2 cut(s) 19, 369
BspACI CCGC 1 cut(s) 143
BspANI GGCC 4 cut(s) 5, 149, 411, 516
BspCNI CTCAG 1 cut(s) 376
BspPI GGATC 1 cut(s) 27
BspT104I TTCGAA 1 cut(s) 709
BsrI ACTGG 1 cut(s) 504
BssMI GATC 2 cut(s) 19, 369
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 2 cut(s) 568, 676
Bst6I CTCTTC 3 cut(s) 265, 478, 486
BstBI TTCGAA 1 cut(s) 709
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 3 cut(s) 116, 202, 384
BstF5I GGATG 3 cut(s) 145, 553, 591
BstKTI GATC 2 cut(s) 22, 372
BstMAI GTCTC 3 cut(s) 192, 640, 682
BstMBI GATC 2 cut(s) 19, 369
BstMWI GCNNNNNNNGC 2 cut(s) 11, 155
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 4 cut(s) 5, 149, 411, 516
BtgZI GCGATG 1 cut(s) 785
BtrI CACGTC 1 cut(s) 847
BtsCI GGATG 3 cut(s) 145, 553, 591
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 190
Csp6I GTAC 4 cut(s) 275, 400, 429, 826
CviAII CATG 5 cut(s) 121, 238, 247, 295, 413
CviQI GTAC 4 cut(s) 275, 400, 429, 826
DdeI CTNAG 3 cut(s) 116, 202, 384
DpnI GATC 2 cut(s) 21, 371
DpnII GATC 2 cut(s) 19, 369
EaeI YGGCCR 1 cut(s) 409
Eam1104I CTCTTC 3 cut(s) 265, 478, 486
EarI CTCTTC 3 cut(s) 265, 478, 486
Eco32I GATATC 1 cut(s) 223
Eco57I CTGAAG 2 cut(s) 186, 456
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 132
EcoRV GATATC 1 cut(s) 223
Esp3I CGTCTC 1 cut(s) 682
FaeI CATG 5 cut(s) 124, 241, 250, 298, 416
FatI CATG 5 cut(s) 120, 237, 246, 294, 412
FblI GTMKAC 1 cut(s) 699
FokI GGATG 3 cut(s) 152, 560, 598
FspBI CTAG 2 cut(s) 791, 839
GsuI CTGGAG 2 cut(s) 128, 155
HaeIII GGCC 4 cut(s) 5, 149, 411, 516
Hin1II CATG 5 cut(s) 124, 241, 250, 298, 416
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HindIII AAGCTT 2 cut(s) 126, 712
HinfI GANTC 2 cut(s) 391, 470
HphI GGTGA 1 cut(s) 619
Hpy166II GTNNAC 2 cut(s) 94, 700
Hpy188I TCNGA 3 cut(s) 197, 385, 436
Hpy188III TCNNGA 5 cut(s) 50, 83, 597, 738, 839
Hpy8I GTNNAC 2 cut(s) 94, 700
HpyAV CCTTC 5 cut(s) 53, 161, 506, 634, 740
HpyCH4III ACNGT 2 cut(s) 568, 676
HpyCH4IV ACGT 1 cut(s) 846
HpyCH4V TGCA 6 cut(s) 14, 188, 306, 341, 457, 556
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 155
HpyF3I CTNAG 3 cut(s) 116, 202, 384
HpySE526I ACGT 1 cut(s) 846
Hsp92II CATG 5 cut(s) 124, 241, 250, 298, 416
Kzo9I GATC 2 cut(s) 19, 369
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 9 cut(s) 60, 92, 119, 146, 485, 530, 582, 596, 768
LweI GCATC 2 cut(s) 130, 201
MaeI CTAG 2 cut(s) 791, 839
MaeII ACGT 1 cut(s) 846
MaeIII GTNAC 2 cut(s) 40, 795
MalI GATC 2 cut(s) 21, 371
MboI GATC 2 cut(s) 19, 369
MboII GAAGA 5 cut(s) 230, 282, 449, 465, 503
MflI RGATCY 1 cut(s) 19
MlsI TGGCCA 1 cut(s) 411
MluCI AATT 6 cut(s) 27, 45, 176, 233, 760, 785
MluNI TGGCCA 1 cut(s) 411
MlyI GAGTC 1 cut(s) 464
MnlI CCTC 8 cut(s) 130, 139, 279, 339, 381, 413, 487, 584
Mox20I TGGCCA 1 cut(s) 411
MroXI GAANNNNTTC 2 cut(s) 128, 441
MscI TGGCCA 1 cut(s) 411
MseI TTAA 3 cut(s) 26, 102, 350
MslI CAYNNNNRTG 1 cut(s) 249
Msp20I TGGCCA 1 cut(s) 411
MspR9I CCNGG 1 cut(s) 134
Mva1269I GAATGC 2 cut(s) 306, 772
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 2 cut(s) 11, 155
NdeII GATC 2 cut(s) 19, 369
NlaIII CATG 5 cut(s) 124, 241, 250, 298, 416
NmuCI GTSAC 1 cut(s) 40
NspI RCATGY 1 cut(s) 250
NspV TTCGAA 1 cut(s) 709
PciI ACATGT 1 cut(s) 246
PctI GAATGC 2 cut(s) 306, 772
PdmI GAANNNNTTC 2 cut(s) 128, 441
PfeI GAWTC 1 cut(s) 391
PfoI TCCNGGA 1 cut(s) 132
PleI GAGTC 1 cut(s) 464
PpsI GAGTC 1 cut(s) 464
PscI ACATGT 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PsuI RGATCY 1 cut(s) 19
RsaI GTAC 4 cut(s) 276, 401, 430, 827
RsaNI GTAC 4 cut(s) 275, 400, 429, 826
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 3 cut(s) 26, 102, 350
Sau3AI GATC 2 cut(s) 19, 369
ScaI AGTACT 2 cut(s) 276, 430
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 1 cut(s) 134
SfaNI GCATC 2 cut(s) 130, 201
SfuI TTCGAA 1 cut(s) 709
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 6 cut(s) 27, 45, 176, 233, 760, 785
SsiI CCGC 1 cut(s) 143
SspMI CTAG 2 cut(s) 791, 839
StyD4I CCNGG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 568, 676
TaiI ACGT 1 cut(s) 849
TaqI TCGA 2 cut(s) 654, 709
TasI AATT 6 cut(s) 27, 45, 176, 233, 760, 785
TatI WGTACW 2 cut(s) 274, 428
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 3 cut(s) 26, 102, 350
Tru9I TTAA 3 cut(s) 26, 102, 350
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 6 cut(s) 102, 137, 226, 246, 472, 564
TspGWI ACGGA 2 cut(s) 32, 346
TspRI CASTG 1 cut(s) 367
XapI RAATTY 2 cut(s) 233, 760
XbaI TCTAGA 1 cut(s) 838
XceI RCATGY 1 cut(s) 250
XcmI CCANNNNNNNNNTGG 1 cut(s) 318
XmiI GTMKAC 1 cut(s) 699
XmnI GAANNNNTTC 2 cut(s) 128, 441
XspI CTAG 2 cut(s) 791, 839
ZrmI AGTACT 2 cut(s) 276, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.