MD06G1155800.v1.1

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
29828805 .. 29833831
5027 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1155800.v1.1.491

Sequence Viewer

Length: 2703 bp
ATGGAGTCAGCTGCATCACTATTGGTTGGGAAAATTGCGGCCATTCTTGAGAACGAAGCATCTTCCATAGCGGCAGTCCGTGATGAAGTTGATGAGCTTAAGCTGGAGCTCATAAGCATGAAATCTTTCTTAATAGATGCTGAAGGCAAGGAACCACAAACAGAAGGAGAGAGAACGTGGGTTACAAGCGTCAGAGATTTGACCTGCGATGCTGAAAATGTCATTGATGAGTTCCTGTATCACATATATGACAAGCAAAGTGCGACTCCATTTGCAAAATTGCTCCACAGAACCATTTACTTTCCAAAGAATCTTTGGTATAGGCATCGAATAGCCAAAAAATTACAGAAAATCACGAAAAAGATCAAAGCCATTCCAGAGAGGAATGAGAGATATGGTGTCTCTACAATAGAAGGAACAAGTTCGGGTAGTGTTCCCAGATGGGTGAAGAACAAAGCCGAGTCTTCTCTTTATATTATGGAAGATGAATTAATCGGCATTGAAGACAAGAAGCAAACGTTAATGGGATTGTTGATGAATGGCGAGGAAAATGAAATGGTTGTGTCTGTGGTCGGGATGGGAGGATCAGGCAAGACAACTCTAGTTGCCAATATCTTCAACAACGAAAATGTAAAGCGGCATTTTGACTGTTATGCATGGATCACTGTTTCTCAAACTTTTGTGATCGAAGACTTATTCAAAAATCTGATCAAGCAATTCCACCAAGGAAGAAAGGAAGAGGTGACAGCACAATTGGATTCCATGAGTTACAAAGAATTGTTAGAGATGTTGTCGGCATACTTGAAGTCTAAAGAAATAAAGATACCACTTCTTAATAGGCATCATGGAAGTCGAATCATGCTTACAACTCGAAAGAAAGACATAGCATCCTATTCTTTTGAAGTTGAAAGTCGTCCTATTGAAATTGAACCCTTGGGAAACAATGAAGTTTGGGAGCTCTTTAGCAAGAAAGCATTCTCAACTTACGATAATAAATCTTGTCCACCAGAGCTTGAATCCTTAGCATGGAAACTTGTGGATAAGTGTGAAGGCCTACCTCTGGCAGTGGTAACTTTAGGTGGTCTAATGTCTTCCAAGAGGTCATCATCGGAATGGAGAAGTGTATATAACAGCTTAAATTGGCACTTGACTAACAATCCTATGCTAGAACCAATGAGCAGCATCTTGTTGCTTAGTTTCAACAATTTGCCCAACCGGTTGAAGCCCTGTTTCCTATATTGTGGCCTTTTCCCAGAAGATTATCTCATCAAAAGAAACAGGTTGATCAGGTTGTGGATAGCTGAAGGGTTTGTTGAACCAATTGATGGGGTCACACTAGAAGAAGTTGCAGAGGGCTATCTTGTGGAACTTATTGTTCGTAGCATGCTACAAGTTGAAAAGAATGAAGCTAGAGGACTAGGAGCATGTAAAATGCATGATCTTGTGCGTGAGCTTGCTTTGTCGACATCAAAAAAGGAAAAGTTTGGTGCTACGTATGTTGGCAGAGAAATAGTTGATAAAGCTGAAATCCGGCGATTGTCAATTCAAACAACTGAAAGAGAAATTAATTCTTGCACAGGTATGTCAGAGCTTCGCTCCTTTATTGTCTTTGGCGCGTTAAAGAAATTGCCTTCTGGATTCAAGTTGTTGAGAGTTCTAGATCTGGAGGGTGCCCCAATTGATAGATTTCCAGATGAACTAGTGTACTTGTTCAACTTAAGATATTTAAATTTGAAGGGAACTTTAATTGAGGAGCTTCCAGAATCCATCGGACGGCTTCGCAACCTTCAAACCTTGAACATCCGTGACAGTAAGATAAAGGCACTTCCGAAAGCAATCTGCAAGTTAGTAAACCTACGCCATCTAATCATGCATCGTTACACTGGTGATCATTATAGCTTTATATATGTCAATGGGACAAAACCAGCATCCGATCTAAGTAAATTACAGAAACTGCAATTTTTGCGATGTGTTGAATCAGAAGGAAAGATTATTAAAGGCATCAGGAATATGACCCAACTTACAAACCTCGGGATTACAAATGTGAAAGCAAGTGACGAGATGGACCTATGTGACTCCCTTCAAAAGTTAGAGCTCCTTCACTCTTTGATTTTAATGGCAAGTGATGAAGAGGAGTTTCTTCGAGTTAATGCACTACGTTTGCCTCCTCCATACCTTCAAAAGGTTTGTTTGGCCGGAAAACTAGAAAGGGTACCTCTTTGGTTTGGTTCACTCCAAAACCTGACGTGTATGATTCTATATTGGTCTAGACTTGAAGAAGATGTGCTACCTCACATTCAAGCATTGCCGAATCTTGAAGGGCTTGAGCTATATAATGCATATGTTGGCGAAAAATTATGTTTCTCCAGAGGCTTCATAAAGCTTAAGCGTTTGGAATTACTTGACTTCCCCTTATTGAATAGTATAGCTATAGAGAAAGGGGCGATGCCAAATCTCCAGGTCTTACGGATTAGGCGTTGCGCGGAGATGAAGACATTGCCGCAGGGCATCGAGTTCCTTGCTGACGTAGAACGCTTGATTCTGTTTTCTGTTCCAATGGAACTTATGGAGTCCGTAAAAGGAGGCATGGATCATCCAAAGGTACAACACATTCCTGAAATCAACATGTATTACGAGAGACAAAATAGGTGGTGTCATGAAAGCTTTTCTGGTAGAAGAATCAAGCCTCAGAAGCACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

901

Amino Acids

103.08

Weight (kDa)

8.14

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 87 5.6e-20 Rx N-terminal domain
NB-ARC PF00931 168 - 328 2.8e-31 NB-ARC domain
WHD_DRP PF23559 416 - 486 1.1e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 531 - 831 9.6e-46 Leucine-rich repeat region
LRR_8 PF13855 572 - 624 7.7e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 212
Acc65I GGTACC 1 cut(s) 2212
AccB1I GGYRCC 2 cut(s) 1670, 2212
AccB7I CCANNNNNTGG 1 cut(s) 1325
AccI GTMKAC 1 cut(s) 1463
AccII CGCG 2 cut(s) 1616, 2483
AciI CCGC 5 cut(s) 38, 71, 637, 2483, 2501
AclI AACGTT 1 cut(s) 518
AclWI GGATC 3 cut(s) 592, 668, 2598
AcoI YGGCCR 2 cut(s) 39, 2193
AcsI RAATTY 1 cut(s) 1729
AcuI CTGAAG 2 cut(s) 162, 1323
AfaI GTAC 3 cut(s) 1706, 2214, 2604
AfiI CCNNNNNNNGG 5 cut(s) 1026, 1060, 1325, 1773, 2182
AflII CTTAAG 3 cut(s) 98, 1717, 2384
AflIII ACRYGT 2 cut(s) 2246, 2625
AgeI ACCGGT 1 cut(s) 1215
AhlI ACTAGT 1 cut(s) 1699
AjiI CACGTC 1 cut(s) 2247
AjnI CCWGG 1 cut(s) 2457
Alw21I GWGCWC 3 cut(s) 111, 960, 2097
Alw26I GTCTC 2 cut(s) 406, 2632
AlwI GGATC 3 cut(s) 592, 668, 2598
AlwNI CAGNNNCTG 1 cut(s) 1954
Ama87I CYCGRG 1 cut(s) 2030
AoxI GGCC 4 cut(s) 39, 1051, 1243, 2193
ApeKI GCWGC 2 cut(s) 11, 1179
ApoI RAATTY 1 cut(s) 1729
AseI ATTAAT 2 cut(s) 491, 1566
AsiGI ACCGGT 1 cut(s) 1215
Asp700I GAANNNNTTC 3 cut(s) 125, 421, 974
Asp718I GGTACC 1 cut(s) 2212
AspLEI GCGC 2 cut(s) 1616, 2483
AspS9I GGNCC 1 cut(s) 2065
AsuHPI GGTGA 3 cut(s) 457, 754, 1898
AvaI CYCGRG 1 cut(s) 2030
AvaII GGWCC 1 cut(s) 2065
BaeGI GKGCMC 1 cut(s) 1675
BanI GGYRCC 2 cut(s) 1670, 2212
BanII GRGCYC 3 cut(s) 111, 960, 2097
BarI GAAGNNNNNNTAC 2 cut(s) 2271, 2303
BbsI GAAGAC 5 cut(s) 456, 510, 696, 1083, 2498
Bbv12I GWGCWC 3 cut(s) 111, 960, 2097
BbvI GCAGC 1 cut(s) 1191
BccI CCATC 6 cut(s) 435, 571, 1319, 1775, 1869, 2056
BceAI ACGGC 1 cut(s) 1790
BcgI CGANNNNNNTGC 2 cut(s) 2501, 2535
BciT130I CCWGG 1 cut(s) 2459
BclI TGATCA 3 cut(s) 708, 1284, 1888
BcoDI GTCTC 2 cut(s) 406, 2632
BcuI ACTAGT 1 cut(s) 1699
BfaI CTAG 9 cut(s) 602, 1166, 1337, 1410, 1418, 1658, 1700, 2204, 2268
BfmI CTRYAG 1 cut(s) 2430
BfrI CTTAAG 3 cut(s) 98, 1717, 2384
BfuAI ACCTGC 1 cut(s) 212
BglII AGATCT 1 cut(s) 1660
BisI GCNGC 6 cut(s) 12, 39, 72, 638, 1180, 2501
BlsI GCNGC 6 cut(s) 13, 40, 73, 639, 1181, 2502
Bme1390I CCNGG 1 cut(s) 2459
Bme18I GGWCC 1 cut(s) 2065
BmeT110I CYCGRG 1 cut(s) 2030
BmgBI CACGTC 1 cut(s) 2247
BmgT120I GGNCC 1 cut(s) 2065
BmiI GGNNCC 3 cut(s) 153, 1672, 2214
BmrFI CCNGG 1 cut(s) 2459
BpiI GAAGAC 5 cut(s) 456, 510, 696, 1083, 2498
BplI GAGNNNNNCTC 2 cut(s) 1580, 1612
BpmI CTGGAG 4 cut(s) 125, 1685, 2350, 2441
Bpu10I CCTNAGC 1 cut(s) 1021
BpuEI CTTGAG 2 cut(s) 68, 2345
BsaAI YACGTR 1 cut(s) 1494
BsaJI CCNNGG 3 cut(s) 724, 933, 2029
BsaWI WCCGGW 1 cut(s) 1215
Bsc4I CCNNNNNNNGG 5 cut(s) 1026, 1060, 1325, 1773, 2182
Bse118I RCCGGY 1 cut(s) 1215
Bse1I ACTGG 1 cut(s) 1888
Bse3DI GCAATG 2 cut(s) 2303, 2495
BseBI CCWGG 1 cut(s) 2459
BseDI CCNNGG 3 cut(s) 724, 933, 2029
BseGI GGATG 5 cut(s) 582, 887, 1800, 1928, 2593
BseLI CCNNNNNNNGG 5 cut(s) 1026, 1060, 1325, 1773, 2182
BseMI GCAATG 2 cut(s) 2303, 2495
BseMII CTCAG 1 cut(s) 2702
BseNI ACTGG 1 cut(s) 1888
BseRI GAGGAG 3 cut(s) 1766, 2147, 2157
BseSI GKGCMC 1 cut(s) 1675
BseXI GCAGC 1 cut(s) 1191
Bsh1236I CGCG 2 cut(s) 1616, 2483
BshFI GGCC 4 cut(s) 41, 1053, 1245, 2195
BshNI GGYRCC 2 cut(s) 1670, 2212
BshTI ACCGGT 1 cut(s) 1215
BsiHKAI GWGCWC 3 cut(s) 111, 960, 2097
BsiHKCI CYCGRG 1 cut(s) 2030
BsiSI CCGG 3 cut(s) 1216, 1531, 2196
BslFI GGGAC 1 cut(s) 1930
BslI CCNNNNNNNGG 5 cut(s) 1026, 1060, 1325, 1773, 2182
BsmAI GTCTC 2 cut(s) 406, 2632
BsmFI GGGAC 1 cut(s) 1930
BsmI GAATGC 1 cut(s) 974
BsnI GGCC 4 cut(s) 41, 1053, 1245, 2195
BsoBI CYCGRG 1 cut(s) 2030
Bsp1286I GDGCHC 4 cut(s) 111, 960, 1675, 2097
BspACI CCGC 5 cut(s) 38, 71, 637, 2483, 2501
BspANI GGCC 4 cut(s) 41, 1053, 1245, 2195
BspCNI CTCAG 1 cut(s) 2701
BspFNI CGCG 2 cut(s) 1616, 2483
BspHI TCATGA 1 cut(s) 2656
BspLI GGNNCC 3 cut(s) 153, 1672, 2214
BspMI ACCTGC 1 cut(s) 212
BspPI GGATC 3 cut(s) 592, 668, 2598
BspT107I GGYRCC 2 cut(s) 1670, 2212
BspTI CTTAAG 3 cut(s) 98, 1717, 2384
BsrDI GCAATG 2 cut(s) 2303, 2495
BsrFI RCCGGY 1 cut(s) 1215
BsrI ACTGG 1 cut(s) 1888
BssAI RCCGGY 1 cut(s) 1215
BssECI CCNNGG 3 cut(s) 724, 933, 2029
BssT1I CCWWGG 2 cut(s) 724, 933
Bst2UI CCWGG 1 cut(s) 2459
Bst4CI ACNGT 3 cut(s) 650, 667, 1811
Bst6I CTCTTC 2 cut(s) 732, 2124
BstAFI CTTAAG 3 cut(s) 98, 1717, 2384
BstAPI GCANNNNNTGC 1 cut(s) 1963
BstBAI YACGTR 1 cut(s) 1494
BstC8I GCNNGC 2 cut(s) 1385, 1455
BstDEI CTNAG 4 cut(s) 1021, 1193, 1937, 2688
BstENI CCTNNNNNAGG 1 cut(s) 2180
BstF5I GGATG 5 cut(s) 582, 887, 1800, 1928, 2593
BstFNI CGCG 2 cut(s) 1616, 2483
BstHHI GCGC 2 cut(s) 1616, 2483
BstMAI GTCTC 2 cut(s) 406, 2632
BstMWI GCNNNNNNNGC 2 cut(s) 1963, 2692
BstNI CCWGG 1 cut(s) 2459
BstNSI RCATGY 3 cut(s) 1387, 1428, 2629
BstSCI CCNGG 1 cut(s) 2457
BstSFI CTRYAG 1 cut(s) 2430
BstSLI GKGCMC 1 cut(s) 1675
BstSNI TACGTA 1 cut(s) 1494
BstUI CGCG 2 cut(s) 1616, 2483
BstV1I GCAGC 1 cut(s) 1191
BstV2I GAAGAC 5 cut(s) 456, 510, 696, 1083, 2498
BstX2I RGATCY 1 cut(s) 1660
BstYI RGATCY 1 cut(s) 1660
BsuRI GGCC 4 cut(s) 41, 1053, 1245, 2195
BtgZI GCGATG 3 cut(s) 222, 1981, 2459
BtrI CACGTC 1 cut(s) 2247
BtsCI GGATG 5 cut(s) 582, 887, 1800, 1928, 2593
BtsI GCAGTG 1 cut(s) 1071
BtsIMutI CAGTG 3 cut(s) 663, 1071, 1881
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 2 cut(s) 1385, 1455
CaiI CAGNNNCTG 1 cut(s) 1954
CciI TCATGA 1 cut(s) 2656
CfoI GCGC 2 cut(s) 1616, 2483
Cfr10I RCCGGY 1 cut(s) 1215
Cfr13I GGNCC 1 cut(s) 2065
CseI GACGC 1 cut(s) 178
Csp6I GTAC 3 cut(s) 1705, 2213, 2603
CspAI ACCGGT 1 cut(s) 1215
CspCI CAANNNNNGTGG 2 cut(s) 2630, 2665
CviQI GTAC 3 cut(s) 1705, 2213, 2603
DdeI CTNAG 4 cut(s) 1021, 1193, 1937, 2688
DraI TTTAAA 1 cut(s) 1728
EaeI YGGCCR 2 cut(s) 39, 2193
Eam1104I CTCTTC 2 cut(s) 732, 2124
EarI CTCTTC 2 cut(s) 732, 2124
Ecl136II GAGCTC 3 cut(s) 109, 958, 2095
Eco105I TACGTA 1 cut(s) 1494
Eco130I CCWWGG 2 cut(s) 724, 933
Eco147I AGGCCT 1 cut(s) 1053
Eco24I GRGCYC 3 cut(s) 111, 960, 2097
Eco47I GGWCC 1 cut(s) 2065
Eco53kI GAGCTC 3 cut(s) 109, 958, 2095
Eco57I CTGAAG 2 cut(s) 162, 1323
Eco88I CYCGRG 1 cut(s) 2030
EcoICRI GAGCTC 3 cut(s) 109, 958, 2095
EcoNI CCTNNNNNAGG 1 cut(s) 2180
EcoRII CCWGG 1 cut(s) 2457
EcoT14I CCWWGG 2 cut(s) 724, 933
EcoT22I ATGCAT 4 cut(s) 658, 1437, 1875, 2341
EcoT38I GRGCYC 3 cut(s) 111, 960, 2097
ErhI CCWWGG 2 cut(s) 724, 933
FaqI GGGAC 1 cut(s) 1930
FauNDI CATATG 1 cut(s) 2341
FbaI TGATCA 3 cut(s) 708, 1284, 1888
FblI GTMKAC 1 cut(s) 1463
Fnu4HI GCNGC 6 cut(s) 12, 39, 72, 638, 1180, 2501
FokI GGATG 5 cut(s) 589, 874, 1787, 1915, 2580
FriOI GRGCYC 3 cut(s) 111, 960, 2097
Fsp4HI GCNGC 6 cut(s) 12, 39, 72, 638, 1180, 2501
FspBI CTAG 9 cut(s) 602, 1166, 1337, 1410, 1418, 1658, 1700, 2204, 2268
GlaI GCGC 2 cut(s) 1615, 2482
GluI GCNGC 6 cut(s) 12, 39, 72, 638, 1180, 2501
GsuI CTGGAG 4 cut(s) 125, 1685, 2350, 2441
HaeIII GGCC 4 cut(s) 41, 1053, 1245, 2195
HapII CCGG 3 cut(s) 1216, 1531, 2196
HgaI GACGC 1 cut(s) 178
HhaI GCGC 2 cut(s) 1616, 2483
Hin6I GCGC 2 cut(s) 1614, 2481
HinP1I GCGC 2 cut(s) 1614, 2481
HincII GTYRAC 1 cut(s) 1464
HindII GTYRAC 1 cut(s) 1464
HindIII AAGCTT 2 cut(s) 2381, 2662
HpaII CCGG 3 cut(s) 1216, 1531, 2196
HphI GGTGA 3 cut(s) 457, 754, 1898
Hpy166II GTNNAC 5 cut(s) 1004, 1464, 1705, 1852, 2231
Hpy188I TCNGA 9 cut(s) 194, 708, 1111, 1588, 1772, 1830, 1933, 1981, 2691
Hpy8I GTNNAC 5 cut(s) 1004, 1464, 1705, 1852, 2231
HpyCH4III ACNGT 3 cut(s) 650, 667, 1811
HpyCH4IV ACGT 6 cut(s) 176, 518, 1493, 2158, 2246, 2526
HpyF10VI GCNNNNNNNGC 2 cut(s) 1963, 2692
HpyF3I CTNAG 4 cut(s) 1021, 1193, 1937, 2688
HpySE526I ACGT 6 cut(s) 176, 518, 1493, 2158, 2246, 2526
HspAI GCGC 2 cut(s) 1614, 2481
KpnI GGTACC 1 cut(s) 2216
Ksp22I TGATCA 3 cut(s) 708, 1284, 1888
LmnI GCTCC 7 cut(s) 106, 288, 955, 1421, 1601, 1753, 2100
Lsp1109I GCAGC 1 cut(s) 1191
MaeI CTAG 9 cut(s) 602, 1166, 1337, 1410, 1418, 1658, 1700, 2204, 2268
MaeII ACGT 6 cut(s) 176, 518, 1493, 2158, 2246, 2526
MaeIII GTNAC 9 cut(s) 181, 742, 767, 1069, 1330, 1805, 1877, 2054, 2072
MfeI CAATTG 3 cut(s) 752, 1320, 1677
MflI RGATCY 1 cut(s) 1660
MhlI GDGCHC 4 cut(s) 111, 960, 1675, 2097
MlyI GAGTC 5 cut(s) 14, 259, 470, 2069, 2579
Mph1103I ATGCAT 4 cut(s) 658, 1437, 1875, 2341
MroXI GAANNNNTTC 3 cut(s) 125, 421, 974
MslI CAYNNNNRTG 4 cut(s) 116, 246, 1111, 1580
MspA1I CMGCKG 1 cut(s) 11
MspCI CTTAAG 3 cut(s) 98, 1717, 2384
MspI CCGG 3 cut(s) 1216, 1531, 2196
MspR9I CCNGG 1 cut(s) 2459
MunI CAATTG 3 cut(s) 752, 1320, 1677
Mva1269I GAATGC 1 cut(s) 974
MvaI CCWGG 1 cut(s) 2459
MvnI CGCG 2 cut(s) 1616, 2483
MwoI GCNNNNNNNGC 2 cut(s) 1963, 2692
NdeI CATATG 1 cut(s) 2341
NlaIV GGNNCC 3 cut(s) 153, 1672, 2214
NmeAIII GCCGAG 1 cut(s) 484
NmuCI GTSAC 5 cut(s) 742, 1330, 1805, 2054, 2072
NsiI ATGCAT 4 cut(s) 658, 1437, 1875, 2341
NspI RCATGY 3 cut(s) 1387, 1428, 2629
PaeI GCATGC 1 cut(s) 1387
PagI TCATGA 1 cut(s) 2656
PceI AGGCCT 1 cut(s) 1053
PciI ACATGT 1 cut(s) 2625
PcsI WCGNNNNNNNCGW 1 cut(s) 2473
PctI GAATGC 1 cut(s) 974
PdmI GAANNNNTTC 3 cut(s) 125, 421, 974
PflMI CCANNNNNTGG 1 cut(s) 1325
PinAI ACCGGT 1 cut(s) 1215
PkrI GCNGC 6 cut(s) 13, 40, 73, 639, 1181, 2502
PleI GAGTC 5 cut(s) 13, 259, 469, 2069, 2578
PpsI GAGTC 5 cut(s) 13, 259, 469, 2069, 2578
Ppu21I YACGTR 1 cut(s) 1494
PscI ACATGT 1 cut(s) 2625
PshBI ATTAAT 2 cut(s) 491, 1566
Psp124BI GAGCTC 3 cut(s) 111, 960, 2097
Psp1406I AACGTT 1 cut(s) 518
Psp6I CCWGG 1 cut(s) 2457
PspGI CCWGG 1 cut(s) 2457
PspN4I GGNNCC 3 cut(s) 153, 1672, 2214
PspPI GGNCC 1 cut(s) 2065
PsrI GAACNNNNNNTAC 2 cut(s) 166, 198
PstNI CAGNNNCTG 1 cut(s) 1954
PsuI RGATCY 1 cut(s) 1660
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 3 cut(s) 1706, 2214, 2604
RsaNI GTAC 3 cut(s) 1705, 2213, 2603
RseI CAYNNNNRTG 4 cut(s) 116, 246, 1111, 1580
SacI GAGCTC 3 cut(s) 111, 960, 2097
SalI GTCGAC 1 cut(s) 1462
SatI GCNGC 6 cut(s) 12, 39, 72, 638, 1180, 2501
Sau96I GGNCC 1 cut(s) 2065
SchI GAGTC 5 cut(s) 14, 259, 470, 2069, 2579
ScrFI CCNGG 1 cut(s) 2459
SduI GDGCHC 4 cut(s) 111, 960, 1675, 2097
SfcI CTRYAG 1 cut(s) 2430
SinI GGWCC 1 cut(s) 2065
SmiI ATTTAAAT 1 cut(s) 1728
SmiMI CAYNNNNRTG 4 cut(s) 116, 246, 1111, 1580
SmlI CTYRAG 5 cut(s) 47, 98, 1717, 2324, 2384
SmoI CTYRAG 5 cut(s) 47, 98, 1717, 2324, 2384
SnaBI TACGTA 1 cut(s) 1494
SpeI ACTAGT 1 cut(s) 1699
SphI GCATGC 1 cut(s) 1387
SseBI AGGCCT 1 cut(s) 1053
SsiI CCGC 5 cut(s) 38, 71, 637, 2483, 2501
SspMI CTAG 9 cut(s) 602, 1166, 1337, 1410, 1418, 1658, 1700, 2204, 2268
SstI GAGCTC 3 cut(s) 111, 960, 2097
StuI AGGCCT 1 cut(s) 1053
StyD4I CCNGG 1 cut(s) 2457
StyI CCWWGG 2 cut(s) 724, 933
SwaI ATTTAAAT 1 cut(s) 1728
TaaI ACNGT 3 cut(s) 650, 667, 1811
TaiI ACGT 6 cut(s) 179, 521, 1496, 2161, 2249, 2529
TaqI TCGA 7 cut(s) 328, 687, 853, 871, 1463, 2143, 2511
TatI WGTACW 1 cut(s) 1704
TauI GCSGC 4 cut(s) 41, 74, 640, 2503
TscAI CASTG 3 cut(s) 670, 1071, 1888
TseFI GTSAC 5 cut(s) 742, 1330, 1805, 2054, 2072
TseI GCWGC 2 cut(s) 11, 1179
Tsp45I GTSAC 5 cut(s) 742, 1330, 1805, 2054, 2072
TspGWI ACGGA 4 cut(s) 68, 1793, 2482, 2563
TspRI CASTG 3 cut(s) 670, 1071, 1888
Van91I CCANNNNNTGG 1 cut(s) 1325
Vha464I CTTAAG 3 cut(s) 98, 1717, 2384
VpaK11BI GGWCC 1 cut(s) 2065
VspI ATTAAT 2 cut(s) 491, 1566
XagI CCTNNNNNAGG 1 cut(s) 2180
XapI RAATTY 1 cut(s) 1729
XbaI TCTAGA 2 cut(s) 1657, 2267
XceI RCATGY 3 cut(s) 1387, 1428, 2629
XcmI CCANNNNNNNNNTGG 1 cut(s) 312
XmiI GTMKAC 1 cut(s) 1463
XmnI GAANNNNTTC 3 cut(s) 125, 421, 974
XspI CTAG 9 cut(s) 602, 1166, 1337, 1410, 1418, 1658, 1700, 2204, 2268
Zsp2I ATGCAT 4 cut(s) 658, 1437, 1875, 2341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.