MD06G1152000.v1.1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000110
Physical Location & Seq
Forward (+)
29584388 .. 29586536
2149 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1152000.v1.1.491

Sequence Viewer

Length: 2106 bp
ATGGAAGACGAACTAATCGGGATTGAAGACAAGAAGCAAAGGTTAATGGGGTTATTGATGAATGGAGAGGAAAATGAAATGGTTGTGTCTATAGTCGGGATGGGAGGATCAGGCAAGACAACTCTTGTTGCCAATACCTTCAACAACGAAAATGTAAAGCGGCATTTTGACTGTTATGCATGGATCACTGTTTCTCAAACTTTTGTGATCGAAGACTTATTAAAAAATCTGATCAAGCAATTCCACCAAGGAAGAAAGGAAGAGATGACTGCACAATTGGATTCCATGAGTTACAAAGAATTGTTAGAGATGTTGTCGACATACTTGAAGTCTAAAAGGTACCTAGTTGTATTGGATGATGTGTGGGACATTAAACTTTGGCAAGAAATAAGGATACCACTTCTTAATAGACATCATGGAAGTCGAATCATGCTTACAACTAGAAAGAAAGACATAGCATTCTATTCTTTTGAAGTTGAAAGTCGTCCTATTGAAATTGAACCCTTGGGAAACAATGAAGCTTGGGAGCTCTTTAGCAAGAAAGCATTCTCAACTTACGATAATAAATCTTGTCCACCAGAGCTTGAATCCTTAGCATGGAAACTTGTGGATAAGTGTGAAGGCCTACCTCTGGCAGTGGTAACTTTAGGTGGTCTAATGTCTTCCAAGAGGTCATCATCGGAATGGAGAAGCGTATATAACAGCTTAAATTGGCACTTGACTAACCATCCTATGCTGGAACCAATGAGCAGCATCTTGTTGCTTAGTTTCAACAATTTGCCCAACCGGTTGAAGCCATGTTTCTTATATTGTGCCCTTTTCCCAGAAGATTATCTCATCAAAAGAAAAAGGTTGATCAGGTTGTGGATAGCTGAAGGGTTTGTTGAACCAATTGATGGGGTCACACCAGAAGAAGTTGCAGAGGGTTATCTTGTGGAACTGATTGTTCGTAGCATTCTACAAGTTGAAAAGCATGAAGCTGTAGGACTAAGAGCATGTAAGATGCATGATCTTGTGCGTGAGCTTGCTTTGTCGATATCAAAGAAGGAAAATTTCGGTGCTACGTGTGTTGGCAGAGAAATAATAGATAAAGCTGAAATCCGCCGATTGTCAATTCAAACAACTGAAAGAGAAATTAATTCTTGCACAGGTATGTCAGAGCTTCGCTCCTTTCTTGTCTTTGGCGCGTTAGAGAAATTGCCTTCTGGATTCAAGTTGTTGAGAGTTCTAGATGTGCAGGATGCTCCAATTGATAGATTTCCAGATGAACTAGTGTACTTGTTCAACTTAAGATATTTAAATTTGAAGAAAACTTTGATTGAGGAGCTTCCAGAATCCATCGGACGGCTTCACAATCTTCAAACGTTGAACATTTGTGACAGTAAGATAAAGGCACTTCCAAAAGCAATCTCCAAGTTAGTAAACCTACGCCATCTAATCATGTATTGTTACATTGGTGATTTGGCGGTCTTTAGACATGTCAGTGGGACAAAAACAGCATCGGATCTAAGTAAATTACAGAAACTGCAAGTTTTGGATTCTGTTGAATCAGAAGGAAAGATTATTAAAGTCATCAGGAATATGACCCAACTTACAAGCCTCGGTATTACAAATGTGAAAGCAAGTGACGAGATGGACCTCTGTGACTCCCTTCAAAAGTTAGAGCTCCTTCACACTTTGCTTTTAGTGGCAAGTGATGAAGAGGAGTTTCTTCGAGTTAATGCACTACGTTCGCCTCCTCTAGACCTTCAAAACATTTTATTGGCCGGAAAACTAGAAAGGTTACCTCTTTGGTTAGGTTCACTCAATAACCTGACACGTATGTATCTACGTTGGTCTAGACTGGAAGAAGATGTGCTACCTCACATTCAAGCATTGCCGAATCTTGAAACGCTTGGGCTATTTAATGCATATGTTGGCAAAAAATTGTGTTTCTCCAGAGGCTTCATAAAGCTTAAGGATTTGGTGTTGAGCAGCTTCCCGGTATTGAATAGTATAGCTATAGAGAAAGGGGCGATGCCAAATCTCCAGCTCTTATCCATTGCGTACTGCCTGGAGTTAAAGGCATTGCCGCAGGGCATTGAGTTCCTTGCTAACAGTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

702

Amino Acids

79.91

Weight (kDa)

6.55

Isoelectric Point (pI)

54.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 9 - 185 5.1e-48 NB-ARC domain
WHD_DRP PF23559 273 - 343 6.1e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 388 - 683 2.4e-40 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 339
AccB1I GGYRCC 1 cut(s) 339
AccB7I CCANNNNNTGG 1 cut(s) 896
AccI GTMKAC 1 cut(s) 317
AccII CGCG 1 cut(s) 1187
AciI CCGC 4 cut(s) 160, 1102, 1466, 2072
AclI AACGTT 1 cut(s) 1364
AclWI GGATC 3 cut(s) 115, 191, 1512
AcoI YGGCCR 1 cut(s) 1764
AcsI RAATTY 2 cut(s) 1051, 1300
AcuI CTGAAG 1 cut(s) 894
AfaI GTAC 3 cut(s) 341, 1277, 2048
AfiI CCNNNNNNNGG 4 cut(s) 597, 631, 896, 1344
AflII CTTAAG 2 cut(s) 1288, 1955
AflIII ACRYGT 3 cut(s) 1064, 1477, 1817
AgeI ACCGGT 1 cut(s) 786
AhlI ACTAGT 1 cut(s) 1270
AjnI CCWGG 1 cut(s) 2052
Alw21I GWGCWC 2 cut(s) 531, 1668
AlwI GGATC 3 cut(s) 115, 191, 1512
AlwNI CAGNNNCTG 1 cut(s) 1525
AoxI GGCC 2 cut(s) 622, 1764
ApeKI GCWGC 2 cut(s) 750, 1974
ApoI RAATTY 2 cut(s) 1051, 1300
AseI ATTAAT 1 cut(s) 1137
AsiGI ACCGGT 1 cut(s) 786
Asp700I GAANNNNTTC 1 cut(s) 545
Asp718I GGTACC 1 cut(s) 339
AspLEI GCGC 1 cut(s) 1187
AspS9I GGNCC 1 cut(s) 1636
AsuC2I CCSGG 1 cut(s) 1982
AsuHPI GGTGA 1 cut(s) 1469
AvaII GGWCC 1 cut(s) 1636
BaeGI GKGCMC 1 cut(s) 817
BaeI ACNNNNGTAYC 2 cut(s) 1808, 1841
BanI GGYRCC 1 cut(s) 339
BanII GRGCYC 2 cut(s) 531, 1668
BarI GAAGNNNNNNTAC 2 cut(s) 1842, 1874
BbsI GAAGAC 4 cut(s) 12, 33, 219, 654
Bbv12I GWGCWC 2 cut(s) 531, 1668
BbvI GCAGC 2 cut(s) 762, 1986
BccI CCATC 6 cut(s) 94, 735, 890, 1346, 1440, 1627
BceAI ACGGC 1 cut(s) 1361
BcgI CGANNNNNNTGC 2 cut(s) 1713, 1747
BciT130I CCWGG 1 cut(s) 2054
BciVI GTATCC 1 cut(s) 387
BclI TGATCA 2 cut(s) 231, 855
BcnI CCSGG 1 cut(s) 1982
BcuI ACTAGT 1 cut(s) 1270
BfaI CTAG 7 cut(s) 344, 441, 1229, 1271, 1742, 1775, 1839
BfmI CTRYAG 3 cut(s) 90, 981, 2001
BfrI CTTAAG 2 cut(s) 1288, 1955
BfuI GTATCC 1 cut(s) 387
BisI GCNGC 4 cut(s) 161, 751, 1975, 2072
BlsI GCNGC 4 cut(s) 162, 752, 1976, 2073
Bme1390I CCNGG 2 cut(s) 1982, 2054
Bme18I GGWCC 1 cut(s) 1636
BmgT120I GGNCC 1 cut(s) 1636
BmiI GGNNCC 2 cut(s) 341, 741
BmrFI CCNGG 2 cut(s) 1982, 2054
BmsI GCATC 5 cut(s) 762, 993, 1231, 1508, 2007
BpiI GAAGAC 4 cut(s) 12, 33, 219, 654
BplI GAGNNNNNCTC 2 cut(s) 1151, 1183
BpmI CTGGAG 3 cut(s) 1921, 2012, 2075
Bpu10I CCTNAGC 1 cut(s) 592
BpuMI CCSGG 1 cut(s) 1982
BsaAI YACGTR 2 cut(s) 1065, 1820
BsaJI CCNNGG 3 cut(s) 247, 504, 1600
BsaWI WCCGGW 1 cut(s) 786
Bsc4I CCNNNNNNNGG 4 cut(s) 597, 631, 896, 1344
Bse118I RCCGGY 1 cut(s) 786
Bse1I ACTGG 1 cut(s) 1848
Bse3DI GCAATG 3 cut(s) 1874, 2040, 2066
BseBI CCWGG 1 cut(s) 2054
BseDI CCNNGG 3 cut(s) 247, 504, 1600
BseGI GGATG 4 cut(s) 105, 361, 727, 1246
BseLI CCNNNNNNNGG 4 cut(s) 597, 631, 896, 1344
BseMI GCAATG 3 cut(s) 1874, 2040, 2066
BseNI ACTGG 1 cut(s) 1848
BseRI GAGGAG 3 cut(s) 1337, 1718, 1728
BseSI GKGCMC 1 cut(s) 817
BseXI GCAGC 2 cut(s) 762, 1986
BsgI GTGCAG 2 cut(s) 255, 1256
Bsh1236I CGCG 1 cut(s) 1187
BshFI GGCC 2 cut(s) 624, 1766
BshNI GGYRCC 1 cut(s) 339
BshTI ACCGGT 1 cut(s) 786
BsiHKAI GWGCWC 2 cut(s) 531, 1668
BsiSI CCGG 3 cut(s) 787, 1767, 1982
BslFI GGGAC 2 cut(s) 380, 1501
BslI CCNNNNNNNGG 4 cut(s) 597, 631, 896, 1344
BsmFI GGGAC 2 cut(s) 380, 1501
BsmI GAATGC 3 cut(s) 458, 545, 954
BsnI GGCC 2 cut(s) 624, 1766
Bsp1286I GDGCHC 3 cut(s) 531, 817, 1668
Bsp143I GATC 7 cut(s) 107, 183, 207, 231, 855, 1009, 1504
BspACI CCGC 4 cut(s) 160, 1102, 1466, 2072
BspANI GGCC 2 cut(s) 624, 1766
BspFNI CGCG 1 cut(s) 1187
BspLI GGNNCC 2 cut(s) 341, 741
BspPI GGATC 3 cut(s) 115, 191, 1512
BspT107I GGYRCC 1 cut(s) 339
BspTI CTTAAG 2 cut(s) 1288, 1955
BsrDI GCAATG 3 cut(s) 1874, 2040, 2066
BsrFI RCCGGY 1 cut(s) 786
BsrI ACTGG 1 cut(s) 1848
BssAI RCCGGY 1 cut(s) 786
BssECI CCNNGG 3 cut(s) 247, 504, 1600
BssMI GATC 7 cut(s) 107, 183, 207, 231, 855, 1009, 1504
BssT1I CCWWGG 2 cut(s) 247, 504
Bst2UI CCWGG 1 cut(s) 2054
Bst4CI ACNGT 4 cut(s) 173, 190, 1382, 2099
Bst6I CTCTTC 2 cut(s) 255, 1695
BstAFI CTTAAG 2 cut(s) 1288, 1955
BstBAI YACGTR 2 cut(s) 1065, 1820
BstC8I GCNNGC 1 cut(s) 1026
BstDEI CTNAG 4 cut(s) 592, 764, 989, 1508
BstEII GGTNACC 1 cut(s) 1782
BstF5I GGATG 4 cut(s) 105, 361, 727, 1246
BstFNI CGCG 1 cut(s) 1187
BstHHI GCGC 1 cut(s) 1187
BstKTI GATC 7 cut(s) 110, 186, 210, 234, 858, 1012, 1507
BstMBI GATC 7 cut(s) 107, 183, 207, 231, 855, 1009, 1504
BstNI CCWGG 1 cut(s) 2054
BstNSI RCATGY 2 cut(s) 999, 1481
BstPI GGTNACC 1 cut(s) 1782
BstSCI CCNGG 2 cut(s) 1980, 2052
BstSFI CTRYAG 3 cut(s) 90, 981, 2001
BstSLI GKGCMC 1 cut(s) 817
BstUI CGCG 1 cut(s) 1187
BstV1I GCAGC 2 cut(s) 762, 1986
BstV2I GAAGAC 4 cut(s) 12, 33, 219, 654
BstX2I RGATCY 1 cut(s) 1504
BstYI RGATCY 1 cut(s) 1504
BsuI GTATCC 1 cut(s) 387
BsuRI GGCC 2 cut(s) 624, 1766
BtgZI GCGATG 1 cut(s) 2030
BtsCI GGATG 4 cut(s) 105, 361, 727, 1246
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 3 cut(s) 186, 642, 1489
Cac8I GCNNGC 1 cut(s) 1026
CaiI CAGNNNCTG 1 cut(s) 1525
CfoI GCGC 1 cut(s) 1187
Cfr10I RCCGGY 1 cut(s) 786
Cfr13I GGNCC 1 cut(s) 1636
Csp6I GTAC 3 cut(s) 340, 1276, 2047
CspAI ACCGGT 1 cut(s) 786
CviQI GTAC 3 cut(s) 340, 1276, 2047
DdeI CTNAG 4 cut(s) 592, 764, 989, 1508
DpnI GATC 7 cut(s) 109, 185, 209, 233, 857, 1011, 1506
DpnII GATC 7 cut(s) 107, 183, 207, 231, 855, 1009, 1504
DraI TTTAAA 1 cut(s) 1299
EaeI YGGCCR 1 cut(s) 1764
Eam1104I CTCTTC 2 cut(s) 255, 1695
EarI CTCTTC 2 cut(s) 255, 1695
EciI GGCGGA 1 cut(s) 1091
Ecl136II GAGCTC 2 cut(s) 529, 1666
Eco130I CCWWGG 2 cut(s) 247, 504
Eco147I AGGCCT 1 cut(s) 624
Eco24I GRGCYC 2 cut(s) 531, 1668
Eco32I GATATC 1 cut(s) 1038
Eco47I GGWCC 1 cut(s) 1636
Eco53kI GAGCTC 2 cut(s) 529, 1666
Eco57I CTGAAG 1 cut(s) 894
Eco91I GGTNACC 1 cut(s) 1782
EcoICRI GAGCTC 2 cut(s) 529, 1666
EcoO65I GGTNACC 1 cut(s) 1782
EcoRII CCWGG 1 cut(s) 2052
EcoRV GATATC 1 cut(s) 1038
EcoT14I CCWWGG 2 cut(s) 247, 504
EcoT22I ATGCAT 3 cut(s) 181, 1008, 1912
EcoT38I GRGCYC 2 cut(s) 531, 1668
ErhI CCWWGG 2 cut(s) 247, 504
FaqI GGGAC 2 cut(s) 380, 1501
FauNDI CATATG 1 cut(s) 1912
FbaI TGATCA 2 cut(s) 231, 855
FblI GTMKAC 1 cut(s) 317
Fnu4HI GCNGC 4 cut(s) 161, 751, 1975, 2072
FokI GGATG 4 cut(s) 112, 368, 714, 1253
FriOI GRGCYC 2 cut(s) 531, 1668
Fsp4HI GCNGC 4 cut(s) 161, 751, 1975, 2072
FspBI CTAG 7 cut(s) 344, 441, 1229, 1271, 1742, 1775, 1839
GlaI GCGC 1 cut(s) 1186
GluI GCNGC 4 cut(s) 161, 751, 1975, 2072
GsuI CTGGAG 3 cut(s) 1921, 2012, 2075
HaeIII GGCC 2 cut(s) 624, 1766
HapII CCGG 3 cut(s) 787, 1767, 1982
HhaI GCGC 1 cut(s) 1187
Hin6I GCGC 1 cut(s) 1185
HinP1I GCGC 1 cut(s) 1185
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HindIII AAGCTT 2 cut(s) 519, 1952
HinfI GANTC 9 cut(s) 281, 426, 587, 1209, 1334, 1538, 1547, 1646, 1882
HpaII CCGG 3 cut(s) 787, 1767, 1982
HphI GGTGA 1 cut(s) 1469
Hpy166II GTNNAC 5 cut(s) 318, 575, 1276, 1423, 1802
Hpy188I TCNGA 6 cut(s) 231, 682, 1159, 1343, 1504, 1552
Hpy8I GTNNAC 5 cut(s) 318, 575, 1276, 1423, 1802
HpyAV CCTTC 9 cut(s) 148, 614, 869, 1039, 1212, 1547, 1661, 1679, 1757
HpyCH4III ACNGT 4 cut(s) 173, 190, 1382, 2099
HpyCH4IV ACGT 5 cut(s) 1064, 1364, 1729, 1819, 1831
HpyCH4V TGCA 9 cut(s) 179, 272, 920, 1006, 1146, 1237, 1528, 1724, 1910
HpyF3I CTNAG 4 cut(s) 592, 764, 989, 1508
HpySE526I ACGT 5 cut(s) 1064, 1364, 1729, 1819, 1831
HspAI GCGC 1 cut(s) 1185
KpnI GGTACC 1 cut(s) 343
Ksp22I TGATCA 2 cut(s) 231, 855
Kzo9I GATC 7 cut(s) 107, 183, 207, 231, 855, 1009, 1504
LmnI GCTCC 5 cut(s) 526, 1172, 1249, 1324, 1671
Lsp1109I GCAGC 2 cut(s) 762, 1986
LweI GCATC 5 cut(s) 762, 993, 1231, 1508, 2007
MaeI CTAG 7 cut(s) 344, 441, 1229, 1271, 1742, 1775, 1839
MaeII ACGT 5 cut(s) 1064, 1364, 1729, 1819, 1831
MaeIII GTNAC 8 cut(s) 290, 640, 901, 1376, 1448, 1625, 1643, 1782
MalI GATC 7 cut(s) 109, 185, 209, 233, 857, 1011, 1506
MboI GATC 7 cut(s) 107, 183, 207, 231, 855, 1009, 1504
MfeI CAATTG 3 cut(s) 275, 891, 1248
MflI RGATCY 1 cut(s) 1504
MhlI GDGCHC 3 cut(s) 531, 817, 1668
MlyI GAGTC 1 cut(s) 1640
Mph1103I ATGCAT 3 cut(s) 181, 1008, 1912
MroXI GAANNNNTTC 1 cut(s) 545
MslI CAYNNNNRTG 3 cut(s) 682, 1151, 1482
MspCI CTTAAG 2 cut(s) 1288, 1955
MspI CCGG 3 cut(s) 787, 1767, 1982
MspR9I CCNGG 2 cut(s) 1982, 2054
MunI CAATTG 3 cut(s) 275, 891, 1248
Mva1269I GAATGC 3 cut(s) 458, 545, 954
MvaI CCWGG 1 cut(s) 2054
MvnI CGCG 1 cut(s) 1187
NciI CCSGG 1 cut(s) 1982
NdeI CATATG 1 cut(s) 1912
NdeII GATC 7 cut(s) 107, 183, 207, 231, 855, 1009, 1504
NlaIV GGNNCC 2 cut(s) 341, 741
NmuCI GTSAC 4 cut(s) 901, 1376, 1625, 1643
NsiI ATGCAT 3 cut(s) 181, 1008, 1912
NspI RCATGY 2 cut(s) 999, 1481
PceI AGGCCT 1 cut(s) 624
PciI ACATGT 1 cut(s) 1477
PctI GAATGC 3 cut(s) 458, 545, 954
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 8 cut(s) 281, 426, 587, 1209, 1334, 1538, 1547, 1882
PflMI CCANNNNNTGG 1 cut(s) 896
PinAI ACCGGT 1 cut(s) 786
PkrI GCNGC 4 cut(s) 162, 752, 1976, 2073
PleI GAGTC 1 cut(s) 1640
PpsI GAGTC 1 cut(s) 1640
Ppu21I YACGTR 2 cut(s) 1065, 1820
PscI ACATGT 1 cut(s) 1477
PshBI ATTAAT 1 cut(s) 1137
Psp124BI GAGCTC 2 cut(s) 531, 1668
Psp1406I AACGTT 1 cut(s) 1364
Psp6I CCWGG 1 cut(s) 2052
PspEI GGTNACC 1 cut(s) 1782
PspGI CCWGG 1 cut(s) 2052
PspN4I GGNNCC 2 cut(s) 341, 741
PspPI GGNCC 1 cut(s) 1636
PstNI CAGNNNCTG 1 cut(s) 1525
PsuI RGATCY 1 cut(s) 1504
RsaI GTAC 3 cut(s) 341, 1277, 2048
RsaNI GTAC 3 cut(s) 340, 1276, 2047
RseI CAYNNNNRTG 3 cut(s) 682, 1151, 1482
SacI GAGCTC 2 cut(s) 531, 1668
SalI GTCGAC 1 cut(s) 316
SatI GCNGC 4 cut(s) 161, 751, 1975, 2072
Sau3AI GATC 7 cut(s) 107, 183, 207, 231, 855, 1009, 1504
Sau96I GGNCC 1 cut(s) 1636
SchI GAGTC 1 cut(s) 1640
ScrFI CCNGG 2 cut(s) 1982, 2054
SduI GDGCHC 3 cut(s) 531, 817, 1668
SfaNI GCATC 5 cut(s) 762, 993, 1231, 1508, 2007
SfcI CTRYAG 3 cut(s) 90, 981, 2001
SinI GGWCC 1 cut(s) 1636
SmiI ATTTAAAT 1 cut(s) 1299
SmiMI CAYNNNNRTG 3 cut(s) 682, 1151, 1482
SmlI CTYRAG 2 cut(s) 1288, 1955
SmoI CTYRAG 2 cut(s) 1288, 1955
SpeI ACTAGT 1 cut(s) 1270
SseBI AGGCCT 1 cut(s) 624
SsiI CCGC 4 cut(s) 160, 1102, 1466, 2072
SspMI CTAG 7 cut(s) 344, 441, 1229, 1271, 1742, 1775, 1839
SstI GAGCTC 2 cut(s) 531, 1668
StuI AGGCCT 1 cut(s) 624
StyD4I CCNGG 2 cut(s) 1980, 2052
StyI CCWWGG 2 cut(s) 247, 504
SwaI ATTTAAAT 1 cut(s) 1299
TaaI ACNGT 4 cut(s) 173, 190, 1382, 2099
TaiI ACGT 5 cut(s) 1067, 1367, 1732, 1822, 1834
TaqI TCGA 5 cut(s) 210, 317, 424, 1034, 1714
TatI WGTACW 1 cut(s) 1275
TauI GCSGC 2 cut(s) 163, 2074
TfiI GAWTC 8 cut(s) 281, 426, 587, 1209, 1334, 1538, 1547, 1882
TscAI CASTG 3 cut(s) 193, 642, 1489
TseFI GTSAC 4 cut(s) 901, 1376, 1625, 1643
TseI GCWGC 2 cut(s) 750, 1974
Tsp45I GTSAC 4 cut(s) 901, 1376, 1625, 1643
TspDTI ATGAA 7 cut(s) 74, 90, 531, 990, 1281, 1713, 1936
TspGWI ACGGA 1 cut(s) 2091
TspRI CASTG 3 cut(s) 193, 642, 1489
Van91I CCANNNNNTGG 1 cut(s) 896
Vha464I CTTAAG 2 cut(s) 1288, 1955
VpaK11BI GGWCC 1 cut(s) 1636
VspI ATTAAT 1 cut(s) 1137
XapI RAATTY 2 cut(s) 1051, 1300
XbaI TCTAGA 3 cut(s) 1228, 1741, 1838
XceI RCATGY 2 cut(s) 999, 1481
XmiI GTMKAC 1 cut(s) 317
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 7 cut(s) 344, 441, 1229, 1271, 1742, 1775, 1839
Zsp2I ATGCAT 3 cut(s) 181, 1008, 1912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.