Rroxscaffold_2G00109280

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000110
Physical Location & Seq
Reverse (-)
33425476 .. 33428300
2825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109280.1

Sequence Viewer

Length: 996 bp
ATGAAGTTGAAGATATCATTGATGAATTCACATATCGCATCTATAAGCGAGGGACGTGGAGTTCGAGTTGCAAGGTGTCTTCACCAAACATTTTATATTCCAAAGAATTTTTGGTATAGGCGTCAAATCGCTAAAAAATTAGACAAAATCAAAGGAACCATTAAAGCCATTTCGGAGAGGAATCGGACATATGGTGTTAGTGTTGTTCTTGCTCTAGAAGGAACGAGTACTTCTCATGATCATATTCAAAAATGGATGAGGAACCGAGCAGAGGCTTCTCTCTTTACCAATGAAGATGGGCTTGTCGGGATTGAAGCCCCGAAAAGAGTATTAATGAAACATATAGTGAATGAACTGCAAAGCCAAAGCATAGTCTCCGTGGTTGGGATGGGAGGATCCGGGAAGACCACTCTTGTTGCAAAGATCTTTAACAATGACATTGTAAAGAGACATTTCAATTGCTATGCATGGGTTACGATTACCCAAACTTATGTGATTGAAGACTTATTTAGAAGCTTGATCAAGCAATTCCATGAAGCTAGGAAGGAGGAGGTTCCAAGAGACATTGATATGATGAGCTTTAGAGAATTGGTAGAGATTCTTGTGAACTACTTGAACTCGAAAAAGTATCTAGTTGTGCTGGATGATGTATGGGATATAAATCTTTGGGCACAAATAAGGGTGTCACTTCAAGATAGACAACTTGGAAGTCGAGTTGTACTCACCACTCGAAATGATGATATAGCAAGCTATGCTTTTGGAGTTGCAAGCCATGTTCACCATATTCAACCCCTAGGAAAGAAGAACACTTGGGAGCTTTTTTGCAAGGAGACATTCTCTACTCATCCTAATAAATCTTGTCCACTTGAACTTGAGCCATTTGCTCGGGAACTTGTGGGGAAGTGTAATGGCCTTCCTCTAGCAATTGTAGCATTAGGTGGTCTCATGTCATCCAAAAAGTCACGTTCGAGTGGAGCAATGTTTGCAACAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

331

Amino Acids

37.52

Weight (kDa)

9.63

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 108 - 280 3.4e-46 NB-ARC domain
nSTAND6 PF25201 111 - 215 4.9e-07 Novel STAND NTPase 6
AAA_16 PF13191 121 - 217 5.7e-06 AAA ATPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 390, 403
AcsI RAATTY 2 cut(s) 25, 106
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 2 cut(s) 229, 720
AfiI CCNNNNNNNGG 2 cut(s) 271, 384
AgsI TTSAA 9 cut(s) 10, 248, 314, 457, 500, 616, 692, 788, 869
AjiI CACGTC 1 cut(s) 56
AloI GAACNNNNNNTCC 2 cut(s) 45, 77
AluBI AGCT 6 cut(s) 516, 539, 579, 750, 817, 992
AluI AGCT 6 cut(s) 516, 539, 579, 750, 817, 992
Alw26I GTCTC 5 cut(s) 379, 442, 555, 824, 947
AlwI GGATC 2 cut(s) 390, 403
Ama87I CYCGRG 1 cut(s) 885
AoxI GGCC 1 cut(s) 910
ApoI RAATTY 2 cut(s) 25, 106
ArsI GACNNNNNNTTYG 2 cut(s) 45, 77
AseI ATTAAT 1 cut(s) 332
AspA2I CCTAGG 1 cut(s) 793
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 3 cut(s) 74, 715, 770
AvaI CYCGRG 1 cut(s) 885
AvrII CCTAGG 1 cut(s) 793
BaeGI GKGCMC 1 cut(s) 673
BamHI GGATCC 1 cut(s) 395
BbsI GAAGAC 3 cut(s) 71, 410, 507
BccI CCATC 2 cut(s) 290, 382
BclI TGATCA 2 cut(s) 238, 519
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 5 cut(s) 379, 442, 555, 824, 947
BfaI CTAG 5 cut(s) 215, 540, 632, 794, 920
BglII AGATCT 1 cut(s) 423
BlnI CCTAGG 1 cut(s) 793
BmcAI AGTACT 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 885
BmgBI CACGTC 1 cut(s) 56
BmiI GGNNCC 4 cut(s) 157, 263, 397, 555
BmrFI CCNGG 1 cut(s) 400
BmsI GCATC 1 cut(s) 47
BpiI GAAGAC 3 cut(s) 71, 410, 507
BplI GAGNNNNNCTC 6 cut(s) 217, 249, 705, 737, 821, 853
BpuEI CTTGAG 1 cut(s) 893
BpuMI CCSGG 1 cut(s) 400
BsaBI GATNNNNATC 1 cut(s) 660
BsaHI GRCGYC 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 947
BsaJI CCNNGG 2 cut(s) 378, 793
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 384
Bse3DI GCAATG 1 cut(s) 984
Bse8I GATNNNNATC 1 cut(s) 660
BseDI CCNNGG 2 cut(s) 378, 793
BseGI GGATG 5 cut(s) 261, 393, 649, 844, 950
BseJI GATNNNNATC 1 cut(s) 660
BseLI CCNNNNNNNGG 2 cut(s) 271, 384
BseMI GCAATG 1 cut(s) 984
BseRI GAGGAG 1 cut(s) 563
BseSI GKGCMC 1 cut(s) 673
BshFI GGCC 1 cut(s) 912
BsiHKCI CYCGRG 1 cut(s) 885
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 2 cut(s) 271, 384
BsmAI GTCTC 5 cut(s) 379, 442, 555, 824, 947
BsmFI GGGAC 1 cut(s) 66
BsnI GGCC 1 cut(s) 912
Bso31I GGTCTC 1 cut(s) 947
BsoBI CYCGRG 1 cut(s) 885
Bsp1286I GDGCHC 1 cut(s) 673
Bsp143I GATC 4 cut(s) 238, 395, 423, 519
BspANI GGCC 1 cut(s) 912
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 4 cut(s) 157, 263, 397, 555
BspPI GGATC 2 cut(s) 390, 403
BspTNI GGTCTC 1 cut(s) 947
BsrDI GCAATG 1 cut(s) 984
BssECI CCNNGG 2 cut(s) 378, 793
BssMI GATC 4 cut(s) 238, 395, 423, 519
BssNI GRCGYC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 793
BstACI GRCGYC 1 cut(s) 121
BstAPI GCANNNNNTGC 2 cut(s) 752, 983
BstC8I GCNNGC 2 cut(s) 748, 769
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 5 cut(s) 261, 393, 649, 844, 950
BstKTI GATC 4 cut(s) 241, 398, 426, 522
BstMAI GTCTC 5 cut(s) 379, 442, 555, 824, 947
BstMBI GATC 4 cut(s) 238, 395, 423, 519
BstMWI GCNNNNNNNGC 3 cut(s) 752, 929, 983
BstSCI CCNGG 1 cut(s) 398
BstSLI GKGCMC 1 cut(s) 673
BstV2I GAAGAC 3 cut(s) 71, 410, 507
BstX2I RGATCY 2 cut(s) 395, 423
BstYI RGATCY 2 cut(s) 395, 423
BsuRI GGCC 1 cut(s) 912
BtgI CCRYGG 1 cut(s) 378
BtrI CACGTC 1 cut(s) 56
BtsCI GGATG 5 cut(s) 261, 393, 649, 844, 950
Cac8I GCNNGC 2 cut(s) 748, 769
CciI TCATGA 1 cut(s) 235
CseI GACGC 1 cut(s) 110
Csp6I GTAC 2 cut(s) 228, 719
CspCI CAANNNNNGTGG 2 cut(s) 397, 432
CviAII CATG 5 cut(s) 236, 468, 533, 773, 946
CviQI GTAC 2 cut(s) 228, 719
DpnI GATC 4 cut(s) 240, 397, 425, 521
DpnII GATC 4 cut(s) 238, 395, 423, 519
Eco130I CCWWGG 1 cut(s) 793
Eco31I GGTCTC 1 cut(s) 947
Eco32I GATATC 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 885
EcoRI GAATTC 1 cut(s) 25
EcoRV GATATC 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 793
EcoT22I ATGCAT 1 cut(s) 469
ErhI CCWWGG 1 cut(s) 793
FaeI CATG 5 cut(s) 239, 471, 536, 776, 949
FalI AAGNNNNNCTT 4 cut(s) 285, 317, 739, 771
FaqI GGGAC 1 cut(s) 66
FatI CATG 5 cut(s) 235, 467, 532, 772, 945
FauNDI CATATG 1 cut(s) 190
FbaI TGATCA 2 cut(s) 238, 519
FokI GGATG 5 cut(s) 268, 400, 656, 831, 937
FspBI CTAG 5 cut(s) 215, 540, 632, 794, 920
HaeIII GGCC 1 cut(s) 912
HapII CCGG 1 cut(s) 399
HgaI GACGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 5 cut(s) 239, 471, 536, 776, 949
HindIII AAGCTT 1 cut(s) 514
HinfI GANTC 2 cut(s) 181, 598
HpaII CCGG 1 cut(s) 399
HphI GGTGA 3 cut(s) 74, 715, 770
Hpy166II GTNNAC 3 cut(s) 607, 778, 863
Hpy188I TCNGA 2 cut(s) 175, 186
Hpy188III TCNNGA 5 cut(s) 215, 236, 307, 692, 887
Hpy8I GTNNAC 3 cut(s) 607, 778, 863
HpyAV CCTTC 3 cut(s) 212, 538, 923
HpyCH4IV ACGT 2 cut(s) 55, 964
HpyCH4V TGCA 7 cut(s) 71, 358, 419, 467, 767, 825, 986
HpyF10VI GCNNNNNNNGC 3 cut(s) 752, 929, 983
HpySE526I ACGT 2 cut(s) 55, 964
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 5 cut(s) 239, 471, 536, 776, 949
Ksp22I TGATCA 2 cut(s) 238, 519
Kzo9I GATC 4 cut(s) 238, 395, 423, 519
LmnI GCTCC 2 cut(s) 814, 974
LpnPI CCDG 2 cut(s) 412, 626
LweI GCATC 1 cut(s) 47
MaeI CTAG 5 cut(s) 215, 540, 632, 794, 920
MaeII ACGT 2 cut(s) 55, 964
MaeIII GTNAC 3 cut(s) 472, 684, 960
MalI GATC 4 cut(s) 240, 397, 425, 521
MboI GATC 4 cut(s) 238, 395, 423, 519
MboII GAAGA 6 cut(s) 22, 71, 305, 415, 512, 814
MfeI CAATTG 2 cut(s) 457, 924
MflI RGATCY 2 cut(s) 395, 423
MhlI GDGCHC 1 cut(s) 673
MluCI AATT 7 cut(s) 25, 106, 137, 457, 527, 587, 924
MnlI CCTC 8 cut(s) 43, 171, 252, 265, 386, 541, 544, 927
Mph1103I ATGCAT 1 cut(s) 469
MseI TTAA 4 cut(s) 162, 332, 429, 994
MslI CAYNNNNRTG 1 cut(s) 569
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 1 cut(s) 400
MunI CAATTG 2 cut(s) 457, 924
MwoI GCNNNNNNNGC 3 cut(s) 752, 929, 983
NciI CCSGG 1 cut(s) 400
NdeI CATATG 1 cut(s) 190
NdeII GATC 4 cut(s) 238, 395, 423, 519
NlaIII CATG 5 cut(s) 239, 471, 536, 776, 949
NlaIV GGNNCC 4 cut(s) 157, 263, 397, 555
NmuCI GTSAC 2 cut(s) 684, 960
NsiI ATGCAT 1 cut(s) 469
PagI TCATGA 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PfeI GAWTC 2 cut(s) 181, 598
PfoI TCCNGGA 1 cut(s) 398
PshBI ATTAAT 1 cut(s) 332
PspN4I GGNNCC 4 cut(s) 157, 263, 397, 555
PsuI RGATCY 2 cut(s) 395, 423
RsaI GTAC 2 cut(s) 229, 720
RsaNI GTAC 2 cut(s) 228, 719
RseI CAYNNNNRTG 1 cut(s) 569
SaqAI TTAA 4 cut(s) 162, 332, 429, 994
Sau3AI GATC 4 cut(s) 238, 395, 423, 519
ScaI AGTACT 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 400
SduI GDGCHC 1 cut(s) 673
SfaNI GCATC 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 569
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
Sse9I AATT 7 cut(s) 25, 106, 137, 457, 527, 587, 924
SspMI CTAG 5 cut(s) 215, 540, 632, 794, 920
StyD4I CCNGG 1 cut(s) 398
StyI CCWWGG 1 cut(s) 793
TaiI ACGT 2 cut(s) 58, 967
TaqI TCGA 5 cut(s) 64, 620, 712, 730, 968
TasI AATT 7 cut(s) 25, 106, 137, 457, 527, 587, 924
TatI WGTACW 2 cut(s) 227, 718
TfiI GAWTC 2 cut(s) 181, 598
Tru1I TTAA 4 cut(s) 162, 332, 429, 994
Tru9I TTAA 4 cut(s) 162, 332, 429, 994
TseFI GTSAC 2 cut(s) 684, 960
Tsp45I GTSAC 2 cut(s) 684, 960
TspDTI ATGAA 6 cut(s) 17, 38, 306, 350, 366, 549
TspGWI ACGGA 1 cut(s) 367
VspI ATTAAT 1 cut(s) 332
XapI RAATTY 2 cut(s) 25, 106
XbaI TCTAGA 1 cut(s) 214
XcmI CCANNNNNNNNNTGG 1 cut(s) 108
XmaJI CCTAGG 1 cut(s) 793
XspI CTAG 5 cut(s) 215, 540, 632, 794, 920
ZrmI AGTACT 1 cut(s) 229
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.