RchiOBHm_Chr4g0410551

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000110
Physical Location & Seq
Forward (+)
34347493 .. 34351506
4014 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38145

Sequence Viewer

Length: 2775 bp
ATGGCCTCATCTGTCACAGACCTCTTAATTGGAAAAATTGTGGCAATTCTTGAGAACGAAGGAACAACCATAGCCAGTGTTCGTGATGAAGTTGATAGCATTAAGGAGGAGCTTCGAAGCATGAAAGCTTTCTTAGTGGATGCAGAGGCCAGCACAGCAAAAACTGAAGGAGAGAAATTGCGGGTTGAAAGCATCAGAGACTTAGCCTATGATGTTGAAGATATCATTGATGAATTCATGTATCACATGTATGAGAAGCAAAGTGGGAGTCGATTTTCAAGGAGGCTACACAAAACCATTTGCTTTCCAAAATGTCTTTGGTTTAGACGTAAAACTGCAAAGAGGTTACAGAAAATCACTAAAAAGATCAAAGACATTCCAGGGAGGAATCAAAGGTACGGTGTTGGCCTTGTAGCAGGAGCAACTACATCTGAAGATATTCACAAATTGGTGCAGAACCAAGCTGAGTCTTCGTTTTTCATTATGGAAAACGAACTGGTTGGGATTGAAGGCAAGAAGCAAATACTAATGGGATGGCTCATGGATGAAGAGCAACACCAAACTGTTATATCTGTGGTTGGTATGGGAGGTTCTGGAAAGACAACTCTAGTTGCCAAGACCTTCAACAATGAAAGGGTGAAGAGACATTTTGATTGTTATGCATGGATTACCGTTTCCCAAACGTATGCTGTGGTAGACTTGTTTCGAAGCTTGATCATGGAATTCCACAAATCTAGGAAGGAAGATTTCCCTGCAAATTTGAATGCCATGAGCCGCAAGGAATTGCTAGAGTTACTAGTTAACTACTTGGAGTCCAAAAAATACCTGGTTGTTCTAGATGACGTGTGGGATATAAAAATTTGGAGAGAAATAAAGGTATCACTTCAAGAGAGGCAACTCGGAAGTCGAATTATAGTTACAACTCGAAAAGAAGATGTAGCATCCAATTCTTTTGGAGTTAGAAGCCATGTTCACCATATTCAACCCCTGCTAAAGAATGAGGCTTGGGAGCTCTTCTGCAAAAAATCATTCTCATCTAATGAGCACAAAACTTGTCCACCTGATTTTGCGTCATTAGCTTGCCAACTTGTGGAGAAGTGTGAAGGCCTTCCTCTGGCTATTGTGGCTTTAGGGGGTCTTATGTCTTCCAAGAAGTTGCTGGATCAATGGCAGCAAGTCTGCAACAGCTTGAATTGGCATCTAGATAACAATCCATTGCTAGACCATGTGAAACACATCTTGTTGCTGAGTTTCAATGATTTGCCATCTCAATTGAAACATTGCTTCCTCTATTGTTCTCTTTTCCCAGAAGATTTTTCAATTAAGAGAAAAAGGCTTATTAGATTGTGGATAGCCGAAGGATTTGTTGAAAATGTGAAAGGGATCACGCCCGAAGAAGTTGCAGATGGCTATCTCTGGGAACTCTGCTTCCGTAGCATGTTACAAGTTGTTGAGAGAAATGGAACAGGAAGGCCAAAAGAAGTTAAGATGCATGATCTGATGCGAGATCTTGCTTTGTTGACTGCCGAGAAGGAAAAGTTTGGTCTTGTATACGACGGGAGAGAAGTAATGGAAGACATCTCAACCCGTCGCTTGTCAATTCACAAATTGGAAGGAGAATTTAAATCATGGCCGGGTATGTCAAAGATTCGTTCTCTTCTTGGCTTTGCAACTGACATGTCCTCATTGACTTTCTCAAACACACTGGTTTGTCAATTCAAATTGTTGAGGACTCTAGACTTGGAGGATGTCCAAATTGGTAAACTGCCAGGTGCAGTTGTTTACTTGTTCAACTTGAGATACTTAAATCTGAAGGGCACTTTAATCGAGGAACTTCCAAAGTCTATAGGGCGTCTCCGCAACCTTCAATTTTTGAACCTGTGGCGTACTAAGATAGAGTCACTTCCACCAGCAATTGCAAAGTTGCTGAACCTGCGCCATCTAATTGTGTATCGCTTCACTGGAAACCATCTGGACTTCACTGAAAACCGTCTGGCCTTCAAACTTGCGAGTGGGACAAGAGCGCCATCAAATATTTGTAAGTTGCAGAAATTGCAATGTTTATCAATTATTGAATCAGAAGGGGACACTGGTAGACTTATCGGCAACATGACTCAACTTAGGAGCATCGGCATATCGAATGTGAAAGAAAGAGATGAGATTGACCTTTGGGTCTCAATTGAAAAGTTGAATCTGCTTCAAAGTTTGATTTTAATGGCAAGTAATGAAGAGGAAATTCTTCCGGTGAAAGCACAATGTCCCCCTCTTCCGCACCTTCAAAAGCTTTATTTGATTGGCAAACTGCAAAACGTAATACCTTGGTTTTCTTCATTGCATAGCCTCACAACTCTGCTTTTGCATTGGTCTAGACTTGAAGAGGATTTACTACTTCAAATTGAAGCACTGCCTAATCTAACAAAGCTTTATCTTCGTAATGCATATGTTGGGGACGAGTTGTGTTTCCGCAGAGGATTTGTAAAGCTGGAGAGGTTGGAGTTGTTCAATTTTGCCTCATTGAAAAATATAACTATAGATGAAGGGGTGATGCCAAATCTTCGGTACTTATGGGTTGACAGCTGCATGCAGTTGAAGACAGTGCCATTGGGCCTTGAATACCTTTCTAATTTACAAACTTTGGGTCTGGAAAATGTTCCCATGGAAGTTATAAGGCCTATTCGGAAAGGAGGTGTAAATCGCTCTAAGGTACAACACATCCCTGAGATCAAACATTTTTTCCTACGATCATCCAAGAGGGTATATGAAAACTTGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

924

Amino Acids

106.17

Weight (kDa)

8.81

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 8 - 94 1e-20 Rx N-terminal domain
NB-ARC PF00931 172 - 347 6.9e-47 NB-ARC domain
WHD_DRP PF23559 434 - 505 2.4e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 549 - 879 5.9e-38 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2666
AasI GACNNNNNNGTC 1 cut(s) 2171
Acc36I ACCTGC 1 cut(s) 1941
AccB7I CCANNNNNTGG 1 cut(s) 1090
AccI GTMKAC 3 cut(s) 696, 1551, 2095
AciI CCGC 5 cut(s) 181, 775, 1858, 2270, 2464
AclWI GGATC 2 cut(s) 1170, 1391
AcoI YGGCCR 1 cut(s) 1631
AcsI RAATTY 6 cut(s) 233, 722, 757, 858, 1619, 2235
AcuI CTGAAG 3 cut(s) 186, 453, 1832
AcyI GRCGYC 1 cut(s) 1852
AfaI GTAC 4 cut(s) 398, 1888, 2561, 2706
AfiI CCNNNNNNNGG 2 cut(s) 1090, 1114
AflIII ACRYGT 3 cut(s) 246, 843, 1677
AhlI ACTAGT 1 cut(s) 796
AjiI CACGTC 1 cut(s) 844
AjnI CCWGG 3 cut(s) 379, 825, 1768
AloI GAACNNNNNNTCC 2 cut(s) 1413, 1445
Alw21I GWGCWC 2 cut(s) 1014, 1047
Alw26I GTCTC 4 cut(s) 192, 637, 1859, 2179
AlwI GGATC 2 cut(s) 1170, 1391
ApeKI GCWGC 2 cut(s) 1171, 2577
ApoI RAATTY 6 cut(s) 233, 722, 757, 858, 1619, 2235
ArsI GACNNNNNNTTYG 4 cut(s) 253, 285, 2623, 2655
Asp700I GAANNNNTTC 5 cut(s) 128, 438, 1107, 2238, 2649
AspLEI GCGC 2 cut(s) 1938, 2026
AspS9I GGNCC 1 cut(s) 2605
AsuC2I CCSGG 1 cut(s) 1635
AsuHPI GGTGA 4 cut(s) 649, 965, 2257, 2554
AsuII TTCGAA 2 cut(s) 115, 706
BaeGI GKGCMC 1 cut(s) 1820
BanII GRGCYC 1 cut(s) 1014
BarI GAAGNNNNNNTAC 2 cut(s) 2367, 2399
BbsI GAAGAC 4 cut(s) 462, 1137, 1581, 2597
Bbv12I GWGCWC 2 cut(s) 1014, 1047
BbvI GCAGC 2 cut(s) 1183, 2564
BccI CCATC 6 cut(s) 528, 1273, 1400, 1947, 1977, 2035
BcgI CGANNNNNNTGC 4 cut(s) 1382, 1416, 1807, 1841
BciT130I CCWGG 3 cut(s) 381, 827, 1770
BclI TGATCA 1 cut(s) 714
BcnI CCSGG 1 cut(s) 1635
BcoDI GTCTC 4 cut(s) 192, 637, 1859, 2179
BcuI ACTAGT 1 cut(s) 796
BfmI CTRYAG 2 cut(s) 1845, 2529
BfoI RGCGCY 1 cut(s) 2027
BfuAI ACCTGC 1 cut(s) 1941
BglII AGATCT 1 cut(s) 1507
BisI GCNGC 3 cut(s) 775, 1172, 2578
BlsI GCNGC 3 cut(s) 776, 1173, 2579
Bme1390I CCNGG 4 cut(s) 381, 827, 1635, 1770
BmgBI CACGTC 1 cut(s) 844
BmgT120I GGNCC 1 cut(s) 2605
BmrFI CCNGG 4 cut(s) 381, 827, 1635, 1770
BmsI GCATC 8 cut(s) 130, 201, 950, 1207, 1479, 1491, 2136, 2535
BpiI GAAGAC 4 cut(s) 462, 1137, 1581, 2597
BpmI CTGGAG 1 cut(s) 2504
Bpu14I TTCGAA 2 cut(s) 115, 706
BpuEI CTTGAG 2 cut(s) 71, 1816
BpuMI CCSGG 1 cut(s) 1635
BsaBI GATNNNNATC 2 cut(s) 1209, 1410
BsaHI GRCGYC 1 cut(s) 1852
BsaI GGTCTC 1 cut(s) 2179
BsaJI CCNNGG 3 cut(s) 380, 2318, 2655
BsaWI WCCGGW 1 cut(s) 2242
Bsc4I CCNNNNNNNGG 2 cut(s) 1090, 1114
Bse1I ACTGG 5 cut(s) 75, 501, 1710, 1966, 2095
Bse3DI GCAATG 4 cut(s) 1214, 1279, 2063, 2330
Bse8I GATNNNNATC 2 cut(s) 1209, 1410
BseBI CCWGG 3 cut(s) 381, 827, 1770
BseDI CCNNGG 3 cut(s) 380, 2318, 2655
BseGI GGATG 7 cut(s) 145, 539, 550, 941, 1753, 2712, 2744
BseJI GATNNNNATC 2 cut(s) 1209, 1410
BseLI CCNNNNNNNGG 2 cut(s) 1090, 1114
BseMI GCAATG 4 cut(s) 1214, 1279, 2063, 2330
BseMII CTCAG 3 cut(s) 456, 1238, 2709
BseNI ACTGG 5 cut(s) 75, 501, 1710, 1966, 2095
BseRI GAGGAG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 1820
BseXI GCAGC 2 cut(s) 1183, 2564
BsgI GTGCAG 2 cut(s) 473, 1794
BsiHKAI GWGCWC 2 cut(s) 1014, 1047
BsiSI CCGG 2 cut(s) 1634, 2243
BslFI GGGAC 4 cut(s) 2029, 2099, 2244, 2462
BslI CCNNNNNNNGG 2 cut(s) 1090, 1114
BsmAI GTCTC 4 cut(s) 192, 637, 1859, 2179
BsmBI CGTCTC 1 cut(s) 1859
BsmFI GGGAC 4 cut(s) 2029, 2099, 2244, 2462
BsmI GAATGC 1 cut(s) 769
Bso31I GGTCTC 1 cut(s) 2179
Bsp119I TTCGAA 2 cut(s) 115, 706
Bsp1286I GDGCHC 3 cut(s) 1014, 1047, 1820
Bsp143I GATC 8 cut(s) 366, 714, 1162, 1383, 1495, 1507, 2721, 2741
Bsp19I CCATGG 1 cut(s) 2655
BspACI CCGC 5 cut(s) 181, 775, 1858, 2270, 2464
BspCNI CTCAG 3 cut(s) 457, 1239, 2710
BspMI ACCTGC 1 cut(s) 1941
BspPI GGATC 2 cut(s) 1170, 1391
BspQI GCTCTTC 2 cut(s) 543, 1019
BspT104I TTCGAA 2 cut(s) 115, 706
BspTNI GGTCTC 1 cut(s) 2179
BsrDI GCAATG 4 cut(s) 1214, 1279, 2063, 2330
BsrI ACTGG 5 cut(s) 75, 501, 1710, 1966, 2095
BssECI CCNNGG 3 cut(s) 380, 2318, 2655
BssMI GATC 8 cut(s) 366, 714, 1162, 1383, 1495, 1507, 2721, 2741
BssNAI GTATAC 1 cut(s) 1552
BssNI GRCGYC 1 cut(s) 1852
BssT1I CCWWGG 2 cut(s) 2318, 2655
Bst1107I GTATAC 1 cut(s) 1552
Bst2UI CCWGG 3 cut(s) 381, 827, 1770
Bst4CI ACNGT 5 cut(s) 401, 565, 673, 1991, 2596
Bst6I CTCTTC 7 cut(s) 543, 635, 1019, 1662, 2223, 2271, 2370
BstACI GRCGYC 1 cut(s) 1852
BstAPI GCANNNNNTGC 1 cut(s) 2053
BstBI TTCGAA 2 cut(s) 115, 706
BstC8I GCNNGC 3 cut(s) 151, 1081, 2582
BstDEI CTNAG 8 cut(s) 133, 202, 465, 1247, 1890, 2120, 2700, 2718
BstDSI CCRYGG 1 cut(s) 2655
BstF5I GGATG 7 cut(s) 145, 539, 550, 941, 1753, 2712, 2744
BstH2I RGCGCY 1 cut(s) 2027
BstHHI GCGC 2 cut(s) 1938, 2026
BstKTI GATC 8 cut(s) 369, 717, 1165, 1386, 1498, 1510, 2724, 2744
BstMAI GTCTC 4 cut(s) 192, 637, 1859, 2179
BstMBI GATC 8 cut(s) 366, 714, 1162, 1383, 1495, 1507, 2721, 2741
BstMWI GCNNNNNNNGC 6 cut(s) 155, 1076, 1124, 1434, 1933, 2053
BstNI CCWGG 3 cut(s) 381, 827, 1770
BstNSI RCATGY 4 cut(s) 250, 1441, 1681, 2584
BstSCI CCNGG 4 cut(s) 379, 825, 1633, 1768
BstSFI CTRYAG 2 cut(s) 1845, 2529
BstSLI GKGCMC 1 cut(s) 1820
BstV1I GCAGC 2 cut(s) 1183, 2564
BstV2I GAAGAC 4 cut(s) 462, 1137, 1581, 2597
BstX2I RGATCY 1 cut(s) 1507
BstYI RGATCY 1 cut(s) 1507
BstZ17I GTATAC 1 cut(s) 1552
BtgI CCRYGG 1 cut(s) 2655
BtrI CACGTC 1 cut(s) 844
BtsCI GGATG 7 cut(s) 145, 539, 550, 941, 1753, 2712, 2744
BtsI GCAGTG 1 cut(s) 2402
BtsIMutI CAGTG 7 cut(s) 82, 1703, 1959, 1980, 2088, 2402, 2601
BveI ACCTGC 1 cut(s) 1941
Cac8I GCNNGC 3 cut(s) 151, 1081, 2582
CfoI GCGC 2 cut(s) 1938, 2026
Cfr13I GGNCC 1 cut(s) 2605
CseI GACGC 2 cut(s) 1059, 1841
CsiI ACCWGGT 1 cut(s) 825
Csp6I GTAC 4 cut(s) 397, 1887, 2560, 2705
CviQI GTAC 4 cut(s) 397, 1887, 2560, 2705
DdeI CTNAG 8 cut(s) 133, 202, 465, 1247, 1890, 2120, 2700, 2718
DpnI GATC 8 cut(s) 368, 716, 1164, 1385, 1497, 1509, 2723, 2743
DpnII GATC 8 cut(s) 366, 714, 1162, 1383, 1495, 1507, 2721, 2741
DraI TTTAAA 1 cut(s) 1624
DrdI GACNNNNNNGTC 1 cut(s) 2171
DseDI GACNNNNNNGTC 1 cut(s) 2171
EaeI YGGCCR 1 cut(s) 1631
Eam1104I CTCTTC 7 cut(s) 543, 635, 1019, 1662, 2223, 2271, 2370
EarI CTCTTC 7 cut(s) 543, 635, 1019, 1662, 2223, 2271, 2370
Ecl136II GAGCTC 1 cut(s) 1012
Eco130I CCWWGG 2 cut(s) 2318, 2655
Eco147I AGGCCT 2 cut(s) 1107, 2671
Eco24I GRGCYC 1 cut(s) 1014
Eco31I GGTCTC 1 cut(s) 2179
Eco32I GATATC 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 1012
Eco57I CTGAAG 3 cut(s) 186, 453, 1832
EcoICRI GAGCTC 1 cut(s) 1012
EcoRI GAATTC 2 cut(s) 233, 722
EcoRII CCWGG 3 cut(s) 379, 825, 1768
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 2 cut(s) 2318, 2655
EcoT22I ATGCAT 3 cut(s) 664, 1494, 2440
EcoT38I GRGCYC 1 cut(s) 1014
ErhI CCWWGG 2 cut(s) 2318, 2655
Esp3I CGTCTC 1 cut(s) 1859
FaqI GGGAC 4 cut(s) 2029, 2099, 2244, 2462
FauI CCCGC 1 cut(s) 174
FauNDI CATATG 1 cut(s) 2440
FbaI TGATCA 1 cut(s) 714
FblI GTMKAC 3 cut(s) 696, 1551, 2095
Fnu4HI GCNGC 3 cut(s) 775, 1172, 2578
FokI GGATG 7 cut(s) 152, 546, 557, 928, 1760, 2699, 2731
FriOI GRGCYC 1 cut(s) 1014
Fsp4HI GCNGC 3 cut(s) 775, 1172, 2578
GlaI GCGC 2 cut(s) 1937, 2025
GluI GCNGC 3 cut(s) 775, 1172, 2578
GsuI CTGGAG 1 cut(s) 2504
HaeII RGCGCY 1 cut(s) 2027
HapII CCGG 2 cut(s) 1634, 2243
HgaI GACGC 2 cut(s) 1059, 1841
HhaI GCGC 2 cut(s) 1938, 2026
Hin1I GRCGYC 1 cut(s) 1852
Hin6I GCGC 2 cut(s) 1936, 2024
HinP1I GCGC 2 cut(s) 1936, 2024
HincII GTYRAC 3 cut(s) 802, 1521, 2572
HindII GTYRAC 3 cut(s) 802, 1521, 2572
HindIII AAGCTT 4 cut(s) 126, 709, 2282, 2420
HpaI GTTAAC 1 cut(s) 802
HpaII CCGG 2 cut(s) 1634, 2243
HphI GGTGA 4 cut(s) 649, 965, 2257, 2554
Hpy188I TCNGA 7 cut(s) 197, 433, 902, 1500, 1812, 2080, 2679
Hpy99I CGWCG 2 cut(s) 1559, 1593
HpyCH4III ACNGT 5 cut(s) 401, 565, 673, 1991, 2596
HpyCH4IV ACGT 4 cut(s) 328, 683, 843, 2310
HpyF10VI GCNNNNNNNGC 6 cut(s) 155, 1076, 1124, 1434, 1933, 2053
HpyF3I CTNAG 8 cut(s) 133, 202, 465, 1247, 1890, 2120, 2700, 2718
HpySE526I ACGT 4 cut(s) 328, 683, 843, 2310
Hsp92I GRCGYC 1 cut(s) 1852
HspAI GCGC 2 cut(s) 1936, 2024
Ksp22I TGATCA 1 cut(s) 714
KspAI GTTAAC 1 cut(s) 802
Kzo9I GATC 8 cut(s) 366, 714, 1162, 1383, 1495, 1507, 2721, 2741
LguI GCTCTTC 2 cut(s) 543, 1019
LmnI GCTCC 4 cut(s) 109, 419, 1009, 2124
Lsp1109I GCAGC 2 cut(s) 1183, 2564
LweI GCATC 8 cut(s) 130, 201, 950, 1207, 1479, 1491, 2136, 2535
MabI ACCWGGT 1 cut(s) 825
MaeII ACGT 4 cut(s) 328, 683, 843, 2310
MaeIII GTNAC 6 cut(s) 13, 345, 792, 916, 1440, 1899
MalI GATC 8 cut(s) 368, 716, 1164, 1385, 1497, 1509, 2723, 2743
MboI GATC 8 cut(s) 366, 714, 1162, 1383, 1495, 1507, 2721, 2741
MfeI CAATTG 3 cut(s) 1271, 1914, 2178
MflI RGATCY 1 cut(s) 1507
MhlI GDGCHC 3 cut(s) 1014, 1047, 1820
MlyI GAGTC 6 cut(s) 277, 476, 821, 1726, 1907, 2107
MmeI TCCRAC 1 cut(s) 2472
Mph1103I ATGCAT 3 cut(s) 664, 1494, 2440
MroXI GAANNNNTTC 5 cut(s) 128, 438, 1107, 2238, 2649
MseI TTAA 9 cut(s) 26, 102, 801, 1323, 1485, 1623, 1805, 1823, 2213
MslI CAYNNNNRTG 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 2577
MspI CCGG 2 cut(s) 1634, 2243
MspR9I CCNGG 4 cut(s) 381, 827, 1635, 1770
MunI CAATTG 3 cut(s) 1271, 1914, 2178
Mva1269I GAATGC 1 cut(s) 769
MvaI CCWGG 3 cut(s) 381, 827, 1770
MwoI GCNNNNNNNGC 6 cut(s) 155, 1076, 1124, 1434, 1933, 2053
NciI CCSGG 1 cut(s) 1635
NcoI CCATGG 1 cut(s) 2655
NdeI CATATG 1 cut(s) 2440
NdeII GATC 8 cut(s) 366, 714, 1162, 1383, 1495, 1507, 2721, 2741
NmeAIII GCCGAG 1 cut(s) 1552
NmuCI GTSAC 2 cut(s) 13, 1899
NsiI ATGCAT 3 cut(s) 664, 1494, 2440
NspI RCATGY 4 cut(s) 250, 1441, 1681, 2584
NspV TTCGAA 2 cut(s) 115, 706
PaeI GCATGC 1 cut(s) 2584
PceI AGGCCT 2 cut(s) 1107, 2671
PciI ACATGT 2 cut(s) 246, 1677
PciSI GCTCTTC 2 cut(s) 543, 1019
PctI GAATGC 1 cut(s) 769
PdmI GAANNNNTTC 5 cut(s) 128, 438, 1107, 2238, 2649
PfeI GAWTC 4 cut(s) 388, 1648, 2075, 2191
PflMI CCANNNNNTGG 1 cut(s) 1090
PkrI GCNGC 3 cut(s) 776, 1173, 2579
PleI GAGTC 6 cut(s) 276, 475, 820, 1726, 1906, 2107
PpsI GAGTC 6 cut(s) 276, 475, 820, 1726, 1906, 2107
PscI ACATGT 2 cut(s) 246, 1677
PsiI TTATAA 1 cut(s) 2666
Psp124BI GAGCTC 1 cut(s) 1014
Psp6I CCWGG 3 cut(s) 379, 825, 1768
PspGI CCWGG 3 cut(s) 379, 825, 1768
PspPI GGNCC 1 cut(s) 2605
PsrI GAACNNNNNNTAC 2 cut(s) 574, 606
PsuI RGATCY 1 cut(s) 1507
PvuII CAGCTG 1 cut(s) 2577
RsaI GTAC 4 cut(s) 398, 1888, 2561, 2706
RsaNI GTAC 4 cut(s) 397, 1887, 2560, 2705
RseI CAYNNNNRTG 1 cut(s) 249
SacI GAGCTC 1 cut(s) 1014
SapI GCTCTTC 2 cut(s) 543, 1019
SaqAI TTAA 9 cut(s) 26, 102, 801, 1323, 1485, 1623, 1805, 1823, 2213
SatI GCNGC 3 cut(s) 775, 1172, 2578
Sau3AI GATC 8 cut(s) 366, 714, 1162, 1383, 1495, 1507, 2721, 2741
Sau96I GGNCC 1 cut(s) 2605
SchI GAGTC 6 cut(s) 277, 476, 821, 1726, 1907, 2107
ScrFI CCNGG 4 cut(s) 381, 827, 1635, 1770
SduI GDGCHC 3 cut(s) 1014, 1047, 1820
SexAI ACCWGGT 1 cut(s) 825
SfaNI GCATC 8 cut(s) 130, 201, 950, 1207, 1479, 1491, 2136, 2535
SfcI CTRYAG 2 cut(s) 1845, 2529
SfuI TTCGAA 2 cut(s) 115, 706
SmiI ATTTAAAT 1 cut(s) 1624
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 2 cut(s) 50, 1795
SmoI CTYRAG 2 cut(s) 50, 1795
SpeI ACTAGT 1 cut(s) 796
SphI GCATGC 1 cut(s) 2584
SseBI AGGCCT 2 cut(s) 1107, 2671
SsiI CCGC 5 cut(s) 181, 775, 1858, 2270, 2464
SspI AATATT 1 cut(s) 2035
SstI GAGCTC 1 cut(s) 1014
StuI AGGCCT 2 cut(s) 1107, 2671
StyD4I CCNGG 4 cut(s) 379, 825, 1633, 1768
StyI CCWWGG 2 cut(s) 2318, 2655
SwaI ATTTAAAT 1 cut(s) 1624
TaaI ACNGT 5 cut(s) 401, 565, 673, 1991, 2596
TaiI ACGT 4 cut(s) 331, 686, 846, 2313
TaqI TCGA 7 cut(s) 115, 271, 706, 907, 925, 1827, 2138
TauI GCSGC 1 cut(s) 777
TfiI GAWTC 4 cut(s) 388, 1648, 2075, 2191
Tru1I TTAA 9 cut(s) 26, 102, 801, 1323, 1485, 1623, 1805, 1823, 2213
Tru9I TTAA 9 cut(s) 26, 102, 801, 1323, 1485, 1623, 1805, 1823, 2213
TscAI CASTG 7 cut(s) 82, 1710, 1966, 1987, 2095, 2409, 2601
TseFI GTSAC 2 cut(s) 13, 1899
TseI GCWGC 2 cut(s) 1171, 2577
Tsp45I GTSAC 2 cut(s) 13, 1899
TspGWI ACGGA 1 cut(s) 1421
TspRI CASTG 7 cut(s) 82, 1710, 1966, 1987, 2095, 2409, 2601
Van91I CCANNNNNTGG 1 cut(s) 1090
XapI RAATTY 6 cut(s) 233, 722, 757, 858, 1619, 2235
XbaI TCTAGA 4 cut(s) 835, 1201, 1735, 2366
XceI RCATGY 4 cut(s) 250, 1441, 1681, 2584
XcmI CCANNNNNNNNNTGG 3 cut(s) 315, 823, 1156
XmiI GTMKAC 3 cut(s) 696, 1551, 2095
XmnI GAANNNNTTC 5 cut(s) 128, 438, 1107, 2238, 2649
Zsp2I ATGCAT 3 cut(s) 664, 1494, 2440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.