Rh5BG134200

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000110
Physical Location & Seq
Forward (+)
13346151 .. 13348892
2742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG134200.1

Sequence Viewer

Length: 2742 bp
ATGGCCTCATCTGTAACAGACCTCTTAATTGGAAAACTTGCGACGATTCTTGAGAACGAAGGAACAGCCATAGCTGGTGTTCGTGATGAAGTTGATAAGGTTAAGGAGGAGCTTCAAAGCATGAAAGCATTCCTAGTGGATGCGGAGGCCAACACAGCAAAAACTAAAGGAGAGGAATTGTGGGTTGCAAGAATCAGAGACTTAGCCCATGATATTGAAGATATCATTGATGAATTCATGTATTACATGTATGAGAAGCAAAGTGGGGGTCAACTTACAAGGTGGGTACGCACTTTCTTACGCGCTCTACGTAATCTTTGGTTCAGGCGTGAAATTGCAAAGAAGTTGCAGAAAATTACTGAAACGATCAAAGAAAATACACAGAGGAATCAAAGATACGGTGTTGGCCCCGTAGGAGGAGCAACTACATCTGAACATATTCACAAATTGGCGCAGAGCCAAGCTGAGTCTTCTTTTTTCATTATGGAAGACGAGTTAGTGGGGATTGAAGGCAAGAAGAAAATACTAATGGGATGGCTCATGGATGAAGATCAACACCAAACGGTTATATCTGTGCTTGGCATGGGAGGTTCTGGAAAGACAACTCTAGCTGCCAAGACCTTCAACAATGAAAGGGTGAAGAGACATTTTCATTGTTGTGCGTGGATTACCGTTTCCCAAACTTCTGATGCGGTACACTTGTTTCGAAGCTTGATCATGGAATTCTACAAATCAAGAAAGGAAGATGTCCCTGAAAATTTGAATACCATGAGCAGCAGAGAATTGATAGAGTTACTAGTTAACTACTTGAAGTCCAAAAGATACCTGGTTGTTCTAGATGACGTGTGGGATATAAAAGTTTGGAGCGAAATAAAGGTATCACTTCAAAATAGGCAACTCGGAAGTCGAATCATAGTTACAACTCGAAAAGAAGATGTAGCATCCAATTCTTTTGGAGTTAAAAGCCATGTTCACTATATTCAACCCCTGCTAAAGAAAGAGGCTTGGGAGCTCTTCTGCAAAAAGGCATTCTCATCTGATGAGCACAAAACTTGTCCTCCTGATTTTGTGTCATTAGCTGGCCAACTGGTGGAAAAGTGTGAAGGCCTTCCTTTGGCACTTGTGGCTTTAGGTGGTCTTATGTCTTCCAAGAAGTCCCTGGATCAATGGCAACCAGTCTGCAGAAGCTTGAATCGGCATCTAAATAAGCTAGACCGTGTGGAAAAAATCTTGTTGCTGAGTTTCAGTGATTTGCCATCTCAATTGAAACATTGCTTCCTCTATTGTTCTCTTTTCCCAGAAGATTTTGTAATTAAGAGAAAAAGGCTCATTAGATTGTGGATAGCCGAAGGATTTGTTGAAAATGCGAAAGGGATCACGCCCGAAGAAGTTGCAGATGGTTATCTTTGGGAACTCTGCTTCCGTAGCATGTTACAAGTTGTTAAGAGAAACGTAACAGGAAGGCCGAAACAAGTTAAGATGCATGATCTGATGCGAGAGCTTGGTTTGTCGACAGCCGAGAAGGAAAAGTTTGGTCATGTATATGATGGGAGAGAAGTAATGGAAGAGATCTCAACCCGTCGCTTGTCAATTCACAAAATGGAAGGAGAAATTAAATCATGGCCGGGTATGTCAAAGATTCGTTCTCTTCTTGTATTTGCAACTGACATGTCCTCATCGTCTTTCTCAAATGCACTGGTTTCTCAATTCAAATTGTTGAGGACTCTAGACTTGGAGGGTGTTCAAATTGATAAACTGCCGGATGCAGTTGTTGACTTGTTCAACTTGAGATATTTAAATTTGCAGGACACTTCAATCAAAGAACTTCCAGAGTCCATAGGGCATCTCCGCAACCTTCAATTTCTGAACCTGAGGCGTACTAAGATAAAGGCACTTCCACAAGGAATTGCAGAGTTGCTAAACCTGCGCCTTCTAATTATGTATCGCTTCTCTGGAAACTATATTGACTTCAAACATTTTAGTGGGACAAAAGCGCCATCAAATATTTGTCAGTTGCTGAAATTGCAATGTTTAAAAATGATTGAATCAGAAGGAGGCACTATTAGACTTTTCGGCAACATGACTCAACTCAGGAGCATCGGCATATCGAATGTGAAAGAAACAGATGAGATTGACCTTTGGGATTCAATTAAGAAGATGACTCTGCTTCAAACTTTGGTTTTAATGGCAAGTAATGAAGAGGAAATCCTTCCGGTGAAAGCACAATTTTCATCTCTTCCGCACCTTAAAAAGCTTGAATTGTTTGGCAGACTGCAAAACGTACCTTGGTTTTCTTCACTGCATAGCCTCACATCTCTGTATCTGCATTGGTCAAGACTTGAAGACGATGTACTACCTCAAATTGAAGCACTGCCCAATCTGACATGGCTTCATCTTTGTAATGCATATGTTGGGGAAGAGTTGTGTTTCTGCAGAGGCTTTGTAAAGCTGGAGACGTTGAATTTGTTGAATTTTGCCTCGGTGACAAAGATTACTATAGAAAAAGGGGTGATGCCAAATCTCCAGATCTTATGGGTTAAACAGTGCATGGAATTGAAGACATTGCCACTAGGCCTTGAATACCTTTCTAATCTACAACTTTTGCTCCTAGATGATGTCCCTATGGAAGTTATAAAGCCCATTCGGAAAGAAGGTGCGGATCGGTCTAAGGTTCAACACATCCCCGAGATCTTACATGGTTTCGAACAGTCATCCAAGTGGGTCTACGAAAACTTGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

913

Amino Acids

104.64

Weight (kDa)

8.39

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 8 - 89 1.1e-21 Rx N-terminal domain
NB-ARC PF00931 172 - 347 9.9e-46 NB-ARC domain
WHD_DRP PF23559 431 - 501 1.8e-21 Disease resistance protein Winged helix domain
LRR_14 PF23598 546 - 866 7.2e-40 Leucine-rich repeat region
LRR_8 PF13855 573 - 629 4.2e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2633
Acc36I ACCTGC 1 cut(s) 1932
AccB7I CCANNNNNTGG 1 cut(s) 1090
AccI GTMKAC 2 cut(s) 1511, 2724
AccII CGCG 1 cut(s) 303
AciI CCGC 5 cut(s) 143, 692, 1849, 2240, 2657
AclWI GGATC 3 cut(s) 1170, 1382, 2667
AcoI YGGCCR 2 cut(s) 1081, 1622
AcsI RAATTY 6 cut(s) 233, 722, 757, 1798, 2461, 2470
AfaI GTAC 5 cut(s) 288, 696, 1879, 2283, 2352
AfiI CCNNNNNNNGG 3 cut(s) 416, 1090, 1114
AflIII ACRYGT 3 cut(s) 246, 843, 1668
AhlI ACTAGT 1 cut(s) 796
AjiI CACGTC 1 cut(s) 844
AjnI CCWGG 2 cut(s) 825, 1158
AloI GAACNNNNNNTCC 2 cut(s) 1404, 1436
Alw21I GWGCWC 2 cut(s) 1014, 1047
Alw26I GTCTC 3 cut(s) 192, 637, 2447
AlwI GGATC 3 cut(s) 1170, 1382, 2667
AlwNI CAGNNNCTG 1 cut(s) 2017
Ama87I CYCGRG 1 cut(s) 2684
AoxI GGCC 8 cut(s) 3, 147, 406, 1081, 1105, 1463, 1622, 2572
ApeKI GCWGC 2 cut(s) 611, 774
ApoI RAATTY 6 cut(s) 233, 722, 757, 1798, 2461, 2470
ArsI GACNNNNNNTTYG 4 cut(s) 253, 285, 2446, 2478
Asp700I GAANNNNTTC 4 cut(s) 128, 438, 1107, 2208
AspLEI GCGC 4 cut(s) 305, 454, 1929, 1996
AspS9I GGNCC 1 cut(s) 407
AsuC2I CCSGG 1 cut(s) 1626
AsuHPI GGTGA 4 cut(s) 649, 2227, 2494, 2521
AsuII TTCGAA 2 cut(s) 706, 2703
AvaI CYCGRG 1 cut(s) 2684
AxyI CCTNAGG 1 cut(s) 1871
BaeI ACNNNNGTAYC 2 cut(s) 686, 719
BalI TGGCCA 1 cut(s) 1083
BanII GRGCYC 1 cut(s) 1014
BarI GAAGNNNNNNTAC 2 cut(s) 2334, 2366
BbsI GAAGAC 5 cut(s) 462, 495, 1137, 2349, 2564
Bbv12I GWGCWC 2 cut(s) 1014, 1047
BbvI GCAGC 2 cut(s) 598, 786
BccI CCATC 5 cut(s) 528, 1264, 1391, 1541, 2005
BcgI CGANNNNNNTGC 2 cut(s) 1373, 1407
BciT130I CCWGG 2 cut(s) 827, 1160
BclI TGATCA 1 cut(s) 714
BcnI CCSGG 1 cut(s) 1626
BcoDI GTCTC 3 cut(s) 192, 637, 2447
BcuI ACTAGT 1 cut(s) 796
BfaI CTAG 8 cut(s) 134, 608, 797, 836, 1211, 1727, 2570, 2609
BfmI CTRYAG 3 cut(s) 1180, 2431, 2496
BfoI RGCGCY 1 cut(s) 1997
BfuAI ACCTGC 1 cut(s) 1932
BglII AGATCT 3 cut(s) 1569, 2526, 2688
BisI GCNGC 2 cut(s) 612, 775
BlsI GCNGC 2 cut(s) 613, 776
Bme1390I CCNGG 3 cut(s) 827, 1160, 1626
BmeT110I CYCGRG 1 cut(s) 2684
BmgBI CACGTC 1 cut(s) 844
BmgT120I GGNCC 1 cut(s) 407
BmiI GGNNCC 1 cut(s) 409
BmrFI CCNGG 3 cut(s) 827, 1160, 1626
BpiI GAAGAC 5 cut(s) 462, 495, 1137, 2349, 2564
BpmI CTGGAG 2 cut(s) 2471, 2507
Bpu14I TTCGAA 2 cut(s) 706, 2703
BpuEI CTTGAG 2 cut(s) 71, 1807
BpuMI CCSGG 1 cut(s) 1626
BsaAI YACGTR 1 cut(s) 311
BsaBI GATNNNNATC 2 cut(s) 549, 1401
BsaJI CCNNGG 3 cut(s) 1158, 2285, 2478
BsaWI WCCGGW 1 cut(s) 2212
BsaXI ACNNNNNCTCC 4 cut(s) 1042, 1072, 2589, 2619
Bsc4I CCNNNNNNNGG 3 cut(s) 416, 1090, 1114
Bse1I ACTGG 3 cut(s) 1092, 1175, 1701
Bse21I CCTNAGG 1 cut(s) 1871
Bse3DI GCAATG 3 cut(s) 1270, 2033, 2561
Bse8I GATNNNNATC 2 cut(s) 549, 1401
BseBI CCWGG 2 cut(s) 827, 1160
BseDI CCNNGG 3 cut(s) 1158, 2285, 2478
BseGI GGATG 7 cut(s) 145, 539, 550, 941, 1768, 2679, 2711
BseJI GATNNNNATC 2 cut(s) 549, 1401
BseLI CCNNNNNNNGG 3 cut(s) 416, 1090, 1114
BseMI GCAATG 3 cut(s) 1270, 2033, 2561
BseMII CTCAG 4 cut(s) 456, 1229, 1862, 2104
BseNI ACTGG 3 cut(s) 1092, 1175, 1701
BseRI GAGGAG 2 cut(s) 122, 432
BseXI GCAGC 2 cut(s) 598, 786
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 8 cut(s) 5, 149, 408, 1083, 1107, 1465, 1624, 2574
BsiHKAI GWGCWC 2 cut(s) 1014, 1047
BsiHKCI CYCGRG 1 cut(s) 2684
BsiSI CCGG 3 cut(s) 1625, 1760, 2213
BslFI GGGAC 4 cut(s) 734, 1141, 1999, 2603
BslI CCNNNNNNNGG 3 cut(s) 416, 1090, 1114
BsmAI GTCTC 3 cut(s) 192, 637, 2447
BsmBI CGTCTC 1 cut(s) 2447
BsmFI GGGAC 4 cut(s) 734, 1141, 1999, 2603
BsmI GAATGC 2 cut(s) 128, 1028
BsnI GGCC 8 cut(s) 5, 149, 408, 1083, 1107, 1465, 1624, 2574
BsoBI CYCGRG 1 cut(s) 2684
Bsp119I TTCGAA 2 cut(s) 706, 2703
Bsp1286I GDGCHC 2 cut(s) 1014, 1047
BspACI CCGC 5 cut(s) 143, 692, 1849, 2240, 2657
BspANI GGCC 8 cut(s) 5, 149, 408, 1083, 1107, 1465, 1624, 2574
BspCNI CTCAG 4 cut(s) 457, 1230, 1863, 2103
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 409
BspMAI CTGCAG 2 cut(s) 1184, 2435
BspMI ACCTGC 1 cut(s) 1932
BspPI GGATC 3 cut(s) 1170, 1382, 2667
BspQI GCTCTTC 1 cut(s) 1019
BspT104I TTCGAA 2 cut(s) 706, 2703
BsrDI GCAATG 3 cut(s) 1270, 2033, 2561
BsrI ACTGG 3 cut(s) 1092, 1175, 1701
BssECI CCNNGG 3 cut(s) 1158, 2285, 2478
BssT1I CCWWGG 1 cut(s) 2285
Bst2UI CCWGG 2 cut(s) 827, 1160
Bst4CI ACNGT 6 cut(s) 401, 565, 673, 1217, 2544, 2709
Bst6I CTCTTC 7 cut(s) 635, 1019, 1560, 1653, 2193, 2241, 2412
BstBAI YACGTR 1 cut(s) 311
BstBI TTCGAA 2 cut(s) 706, 2703
BstC8I GCNNGC 1 cut(s) 1081
BstDEI CTNAG 7 cut(s) 202, 465, 1238, 1871, 1881, 2090, 2667
BstF5I GGATG 7 cut(s) 145, 539, 550, 941, 1768, 2679, 2711
BstFNI CGCG 1 cut(s) 303
BstH2I RGCGCY 1 cut(s) 1997
BstHHI GCGC 4 cut(s) 305, 454, 1929, 1996
BstMAI GTCTC 3 cut(s) 192, 637, 2447
BstMWI GCNNNNNNNGC 5 cut(s) 155, 1124, 1425, 1924, 2023
BstNI CCWGG 2 cut(s) 827, 1160
BstNSI RCATGY 3 cut(s) 250, 1432, 1672
BstSCI CCNGG 3 cut(s) 825, 1158, 1624
BstSFI CTRYAG 3 cut(s) 1180, 2431, 2496
BstSNI TACGTA 1 cut(s) 311
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 2 cut(s) 598, 786
BstV2I GAAGAC 5 cut(s) 462, 495, 1137, 2349, 2564
BstX2I RGATCY 3 cut(s) 1569, 2526, 2688
BstYI RGATCY 3 cut(s) 1569, 2526, 2688
Bsu36I CCTNAGG 1 cut(s) 1871
BsuRI GGCC 8 cut(s) 5, 149, 408, 1083, 1107, 1465, 1624, 2574
BtrI CACGTC 1 cut(s) 844
BtsCI GGATG 7 cut(s) 145, 539, 550, 941, 1768, 2679, 2711
BtsI GCAGTG 2 cut(s) 2297, 2369
BtsIMutI CAGTG 5 cut(s) 1252, 1694, 2297, 2369, 2549
BveI ACCTGC 1 cut(s) 1932
Cac8I GCNNGC 1 cut(s) 1081
CaiI CAGNNNCTG 1 cut(s) 2017
CfoI GCGC 4 cut(s) 305, 454, 1929, 1996
Cfr13I GGNCC 1 cut(s) 407
CsiI ACCWGGT 1 cut(s) 825
Csp6I GTAC 5 cut(s) 287, 695, 1878, 2282, 2351
CviQI GTAC 5 cut(s) 287, 695, 1878, 2282, 2351
DdeI CTNAG 7 cut(s) 202, 465, 1238, 1871, 1881, 2090, 2667
DraI TTTAAA 2 cut(s) 1797, 2034
EaeI YGGCCR 2 cut(s) 1081, 1622
Eam1104I CTCTTC 7 cut(s) 635, 1019, 1560, 1653, 2193, 2241, 2412
EarI CTCTTC 7 cut(s) 635, 1019, 1560, 1653, 2193, 2241, 2412
Ecl136II GAGCTC 1 cut(s) 1012
Eco105I TACGTA 1 cut(s) 311
Eco130I CCWWGG 1 cut(s) 2285
Eco147I AGGCCT 2 cut(s) 1107, 2574
Eco24I GRGCYC 1 cut(s) 1014
Eco32I GATATC 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 1012
Eco81I CCTNAGG 1 cut(s) 1871
Eco88I CYCGRG 1 cut(s) 2684
EcoICRI GAGCTC 1 cut(s) 1012
EcoRI GAATTC 2 cut(s) 233, 722
EcoRII CCWGG 2 cut(s) 825, 1158
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 2285
EcoT22I ATGCAT 2 cut(s) 1485, 2407
EcoT38I GRGCYC 1 cut(s) 1014
ErhI CCWWGG 1 cut(s) 2285
Esp3I CGTCTC 1 cut(s) 2447
FaqI GGGAC 4 cut(s) 734, 1141, 1999, 2603
FauNDI CATATG 1 cut(s) 2407
FbaI TGATCA 1 cut(s) 714
FblI GTMKAC 2 cut(s) 1511, 2724
Fnu4HI GCNGC 2 cut(s) 612, 775
FokI GGATG 7 cut(s) 152, 546, 557, 928, 1775, 2666, 2698
FriOI GRGCYC 1 cut(s) 1014
Fsp4HI GCNGC 2 cut(s) 612, 775
FspBI CTAG 8 cut(s) 134, 608, 797, 836, 1211, 1727, 2570, 2609
GlaI GCGC 4 cut(s) 304, 453, 1928, 1995
GluI GCNGC 2 cut(s) 612, 775
GsuI CTGGAG 2 cut(s) 2471, 2507
HaeII RGCGCY 1 cut(s) 1997
HaeIII GGCC 8 cut(s) 5, 149, 408, 1083, 1107, 1465, 1624, 2574
HapII CCGG 3 cut(s) 1625, 1760, 2213
HhaI GCGC 4 cut(s) 305, 454, 1929, 1996
Hin6I GCGC 4 cut(s) 303, 452, 1927, 1994
HinP1I GCGC 4 cut(s) 303, 452, 1927, 1994
HincII GTYRAC 4 cut(s) 272, 802, 1512, 1774
HindII GTYRAC 4 cut(s) 272, 802, 1512, 1774
HindIII AAGCTT 3 cut(s) 709, 1186, 2252
HpaI GTTAAC 1 cut(s) 802
HpaII CCGG 3 cut(s) 1625, 1760, 2213
HphI GGTGA 4 cut(s) 649, 2227, 2494, 2521
Hpy166II GTNNAC 7 cut(s) 272, 697, 802, 973, 1512, 1774, 2725
Hpy8I GTNNAC 7 cut(s) 272, 697, 802, 973, 1512, 1774, 2725
Hpy99I CGWCG 2 cut(s) 46, 1584
HpyCH4III ACNGT 6 cut(s) 401, 565, 673, 1217, 2544, 2709
HpyCH4IV ACGT 5 cut(s) 310, 843, 1452, 2280, 2456
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 1124, 1425, 1924, 2023
HpyF3I CTNAG 7 cut(s) 202, 465, 1238, 1871, 1881, 2090, 2667
HpySE526I ACGT 5 cut(s) 310, 843, 1452, 2280, 2456
HspAI GCGC 4 cut(s) 303, 452, 1927, 1994
Ksp22I TGATCA 1 cut(s) 714
KspAI GTTAAC 1 cut(s) 802
LguI GCTCTTC 1 cut(s) 1019
LmnI GCTCC 6 cut(s) 109, 419, 864, 1009, 2094, 2610
Lsp1109I GCAGC 2 cut(s) 598, 786
MabI ACCWGGT 1 cut(s) 825
MaeI CTAG 8 cut(s) 134, 608, 797, 836, 1211, 1727, 2570, 2609
MaeII ACGT 5 cut(s) 310, 843, 1452, 2280, 2456
MaeIII GTNAC 6 cut(s) 13, 792, 916, 1431, 1453, 2482
MfeI CAATTG 1 cut(s) 1262
MflI RGATCY 3 cut(s) 1569, 2526, 2688
MhlI GDGCHC 2 cut(s) 1014, 1047
MlsI TGGCCA 1 cut(s) 1083
MluNI TGGCCA 1 cut(s) 1083
MlyI GAGTC 5 cut(s) 476, 1717, 1841, 2077, 2155
Mox20I TGGCCA 1 cut(s) 1083
Mph1103I ATGCAT 2 cut(s) 1485, 2407
MroXI GAANNNNTTC 4 cut(s) 128, 438, 1107, 2208
MscI TGGCCA 1 cut(s) 1083
MslI CAYNNNNRTG 4 cut(s) 657, 1542, 1980, 2716
Msp20I TGGCCA 1 cut(s) 1083
MspI CCGG 3 cut(s) 1625, 1760, 2213
MspR9I CCNGG 3 cut(s) 827, 1160, 1626
MunI CAATTG 1 cut(s) 1262
Mva1269I GAATGC 2 cut(s) 128, 1028
MvaI CCWGG 2 cut(s) 827, 1160
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 5 cut(s) 155, 1124, 1425, 1924, 2023
NciI CCSGG 1 cut(s) 1626
NdeI CATATG 1 cut(s) 2407
NlaIV GGNNCC 1 cut(s) 409
NmeAIII GCCGAG 1 cut(s) 1543
NmuCI GTSAC 1 cut(s) 2482
NsiI ATGCAT 2 cut(s) 1485, 2407
NspI RCATGY 3 cut(s) 250, 1432, 1672
NspV TTCGAA 2 cut(s) 706, 2703
PceI AGGCCT 2 cut(s) 1107, 2574
PciI ACATGT 2 cut(s) 246, 1668
PciSI GCTCTTC 1 cut(s) 1019
PcsI WCGNNNNNNNCGW 1 cut(s) 307
PctI GAATGC 2 cut(s) 128, 1028
PdmI GAANNNNTTC 4 cut(s) 128, 438, 1107, 2208
PfeI GAWTC 8 cut(s) 46, 192, 388, 909, 1192, 1639, 2045, 2144
PflMI CCANNNNNTGG 1 cut(s) 1090
PkrI GCNGC 2 cut(s) 613, 776
PleI GAGTC 5 cut(s) 475, 1717, 1840, 2077, 2155
PpsI GAGTC 5 cut(s) 475, 1717, 1840, 2077, 2155
Ppu21I YACGTR 1 cut(s) 311
PscI ACATGT 2 cut(s) 246, 1668
PsiI TTATAA 1 cut(s) 2633
Psp124BI GAGCTC 1 cut(s) 1014
Psp6I CCWGG 2 cut(s) 825, 1158
PspGI CCWGG 2 cut(s) 825, 1158
PspN4I GGNNCC 1 cut(s) 409
PspPI GGNCC 1 cut(s) 407
PstI CTGCAG 2 cut(s) 1184, 2435
PstNI CAGNNNCTG 1 cut(s) 2017
PsuI RGATCY 3 cut(s) 1569, 2526, 2688
RsaI GTAC 5 cut(s) 288, 696, 1879, 2283, 2352
RsaNI GTAC 5 cut(s) 287, 695, 1878, 2282, 2351
RseI CAYNNNNRTG 4 cut(s) 657, 1542, 1980, 2716
SacI GAGCTC 1 cut(s) 1014
SalI GTCGAC 1 cut(s) 1510
SapI GCTCTTC 1 cut(s) 1019
SatI GCNGC 2 cut(s) 612, 775
Sau96I GGNCC 1 cut(s) 407
SchI GAGTC 5 cut(s) 476, 1717, 1841, 2077, 2155
ScrFI CCNGG 3 cut(s) 827, 1160, 1626
SduI GDGCHC 2 cut(s) 1014, 1047
SexAI ACCWGGT 1 cut(s) 825
SfcI CTRYAG 3 cut(s) 1180, 2431, 2496
SfuI TTCGAA 2 cut(s) 706, 2703
SmiI ATTTAAAT 1 cut(s) 1797
SmiMI CAYNNNNRTG 4 cut(s) 657, 1542, 1980, 2716
SmlI CTYRAG 2 cut(s) 50, 1786
SmoI CTYRAG 2 cut(s) 50, 1786
SnaBI TACGTA 1 cut(s) 311
SpeI ACTAGT 1 cut(s) 796
SseBI AGGCCT 2 cut(s) 1107, 2574
SsiI CCGC 5 cut(s) 143, 692, 1849, 2240, 2657
SspI AATATT 1 cut(s) 2005
SspMI CTAG 8 cut(s) 134, 608, 797, 836, 1211, 1727, 2570, 2609
SstI GAGCTC 1 cut(s) 1014
StuI AGGCCT 2 cut(s) 1107, 2574
StyD4I CCNGG 3 cut(s) 825, 1158, 1624
StyI CCWWGG 1 cut(s) 2285
SwaI ATTTAAAT 1 cut(s) 1797
TaaI ACNGT 6 cut(s) 401, 565, 673, 1217, 2544, 2709
TaiI ACGT 5 cut(s) 313, 846, 1455, 2283, 2459
TaqI TCGA 6 cut(s) 706, 907, 925, 1511, 2108, 2703
TaqII GACCGA 1 cut(s) 2652
TatI WGTACW 1 cut(s) 2350
TfiI GAWTC 8 cut(s) 46, 192, 388, 909, 1192, 1639, 2045, 2144
TscAI CASTG 5 cut(s) 1252, 1701, 2304, 2376, 2549
TseFI GTSAC 1 cut(s) 2482
TseI GCWGC 2 cut(s) 611, 774
Tsp45I GTSAC 1 cut(s) 2482
TspGWI ACGGA 1 cut(s) 1412
TspRI CASTG 5 cut(s) 1252, 1701, 2304, 2376, 2549
Van91I CCANNNNNTGG 1 cut(s) 1090
XapI RAATTY 6 cut(s) 233, 722, 757, 1798, 2461, 2470
XbaI TCTAGA 2 cut(s) 835, 1726
XceI RCATGY 3 cut(s) 250, 1432, 1672
XcmI CCANNNNNNNNNTGG 2 cut(s) 823, 1156
XmiI GTMKAC 2 cut(s) 1511, 2724
XmnI GAANNNNTTC 4 cut(s) 128, 438, 1107, 2208
XspI CTAG 8 cut(s) 134, 608, 797, 836, 1211, 1727, 2570, 2609
Zsp2I ATGCAT 2 cut(s) 1485, 2407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.