Rh6BG010300

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
1594637 .. 1594969
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG010300.1

Sequence Viewer

Length: 333 bp
ATGCATTGGTCTAGACTTGAAGAAGATTTACTACCTCTGGTTGAAGCACTAACCTGTCTCAGAAGGCTTAGCATTATTAATGCCTGTGCTGGAAGTGAGTTGTGTTTCAGAAGAGGCTTTACAATGCTTCAACAGTTGCAGTGGGGTGGTGCCCAGTTCTTATCCTGGGATAGCTGCAAGGAATTAAAGACATTGCCACATGGTCTTGAATACCATACTCAACTAGAAACACTGAGATTGAACTCTGTTCCTGTGAAACTTATAGAGTCCATACGAGATGGAGGTGTGGATCGCCAAAGATACATAACTTTATCTTATTTTTGCACTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

12.72

Weight (kDa)

6.81

Isoelectric Point (pI)

65.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 149
AclWI GGATC 1 cut(s) 297
AgsI TTSAA 5 cut(s) 20, 44, 131, 209, 241
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 1 cut(s) 174
AluI AGCT 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 174
AseI ATTAAT 1 cut(s) 78
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 149
BarI GAAGNNNNNNTAC 6 cut(s) 12, 15, 44, 47, 103, 135
BbvI GCAGC 1 cut(s) 161
BccI CCATC 1 cut(s) 272
BciT130I CCWGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 2 cut(s) 12, 224
BisI GCNGC 1 cut(s) 175
BlpI GCTNAGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 166
BmrI ACTGGG 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 148
Bpu1102I GCTNAGC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 165
BseMI GCAATG 1 cut(s) 191
BseMII CTCAG 2 cut(s) 73, 224
BseNI ACTGG 1 cut(s) 154
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 1 cut(s) 161
BshNI GGYRCC 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 289
Bsp1720I GCTNAGC 1 cut(s) 68
BspCNI CTCAG 2 cut(s) 72, 225
BspLI GGNNCC 1 cut(s) 151
BspPI GGATC 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 191
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 135
Bst6I CTCTTC 1 cut(s) 106
BstDEI CTNAG 3 cut(s) 59, 68, 233
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 1 cut(s) 289
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 161
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 2 cut(s) 146, 230
CviAII CATG 1 cut(s) 200
CviJI RGCY 3 cut(s) 67, 117, 174
CviKI_1 RGCY 3 cut(s) 67, 117, 174
DdeI CTNAG 3 cut(s) 59, 68, 233
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 164
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 203
FaiI YATR 5 cut(s) 201, 216, 263, 272, 305
FatI CATG 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 175
FspBI CTAG 2 cut(s) 12, 224
GluI GCNGC 1 cut(s) 175
Hin1II CATG 1 cut(s) 203
HinfI GANTC 1 cut(s) 266
Hpy188I TCNGA 2 cut(s) 62, 110
Hpy188III TCNNGA 2 cut(s) 12, 206
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4V TGCA 4 cut(s) 4, 139, 177, 324
HpyF3I CTNAG 3 cut(s) 59, 68, 233
Hsp92II CATG 1 cut(s) 203
Kzo9I GATC 1 cut(s) 289
LpnPI CCDG 8 cut(s) 23, 67, 75, 97, 151, 167, 178, 264
Lsp1109I GCAGC 1 cut(s) 161
MaeI CTAG 2 cut(s) 12, 224
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 3 cut(s) 32, 35, 123
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 1 cut(s) 182
MlyI GAGTC 1 cut(s) 275
MnlI CCTC 3 cut(s) 45, 107, 275
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 78, 185, 331
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
NdeII GATC 1 cut(s) 289
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 1 cut(s) 151
NsiI ATGCAT 1 cut(s) 6
PkrI GCNGC 1 cut(s) 176
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PshBI ATTAAT 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 151
SaqAI TTAA 3 cut(s) 78, 185, 331
SatI GCNGC 1 cut(s) 175
Sau3AI GATC 1 cut(s) 289
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 154
SetI ASST 4 cut(s) 37, 56, 176, 286
Sse9I AATT 1 cut(s) 182
SspMI CTAG 2 cut(s) 12, 224
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 135
TasI AATT 1 cut(s) 182
Tru1I TTAA 3 cut(s) 78, 185, 331
Tru9I TTAA 3 cut(s) 78, 185, 331
TscAI CASTG 2 cut(s) 146, 237
TseI GCWGC 1 cut(s) 174
TspRI CASTG 2 cut(s) 146, 237
VspI ATTAAT 1 cut(s) 78
XbaI TCTAGA 1 cut(s) 11
XspI CTAG 2 cut(s) 12, 224
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.