Rorug05G0043400

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
3827387 .. 3828351
965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0043400.1

Sequence Viewer

Length: 357 bp
ATGGAAGTTCTGTCCTTGGTGGCTCCTCCGGGTTGGAGTAAGAAAGTAAAGTTGTCACAACTTATAGTTGAGTTCCGAGTGTTCCTCTTACTGTGGTCGCAGGAGAAAAAGGCAAAGACCAAAGCCAACATCCTAGATCAAATCCAACACCTACTGGCTCAAACCATCCATCATCTTCATGACATTGTTAAGATCATAGCAACTAGGTTTGGCAAATTTGAAACTTGTGTGGAGACTGTAAGCATTGTTAAGATTATTGCAAGCAAGTTATCGATTGAAAGTCCTGGTTGTGATGGTCCCCTTTCTTTTGGGATTGTGGATGTATACTTAACATTCCAAATAAGCTATCACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.31

Weight (kDa)

9.17

Isoelectric Point (pI)

31.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 324
AcsI RAATTY 1 cut(s) 215
AgsI TTSAA 2 cut(s) 221, 278
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 1 cut(s) 345
AluI AGCT 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 296
AsuC2I CCSGG 1 cut(s) 30
AvaII GGWCC 1 cut(s) 296
BccI CCATC 3 cut(s) 173, 177, 287
BciT130I CCWGG 1 cut(s) 285
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 2 cut(s) 134, 204
Bme1390I CCNGG 2 cut(s) 30, 285
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 2 cut(s) 24, 298
BmrFI CCNGG 2 cut(s) 30, 285
BplI GAGNNNNNCTC 2 cut(s) 69, 101
BpuMI CCSGG 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 285
BseCI ATCGAT 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 3 cut(s) 129, 165, 325
BseNI ACTGG 1 cut(s) 159
BseRI GAGGAG 1 cut(s) 15
BshVI ATCGAT 1 cut(s) 272
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 282
Bsp143I GATC 2 cut(s) 136, 192
BspDI ATCGAT 1 cut(s) 272
BspHI TCATGA 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 24, 298
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 2 cut(s) 136, 192
BssNAI GTATAC 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 15
Bst1107I GTATAC 1 cut(s) 325
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 2 cut(s) 93, 238
BstC8I GCNNGC 1 cut(s) 262
BstF5I GGATG 3 cut(s) 129, 165, 325
BstKTI GATC 2 cut(s) 139, 195
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 2 cut(s) 136, 192
BstNI CCWGG 1 cut(s) 285
BstSCI CCNGG 2 cut(s) 28, 283
BstZ17I GTATAC 1 cut(s) 325
Bsu15I ATCGAT 1 cut(s) 272
BsuTUI ATCGAT 1 cut(s) 272
BtsCI GGATG 3 cut(s) 129, 165, 325
Cac8I GCNNGC 1 cut(s) 262
CciI TCATGA 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 296
ClaI ATCGAT 1 cut(s) 272
CviAII CATG 1 cut(s) 179
CviJI RGCY 4 cut(s) 23, 125, 158, 345
CviKI_1 RGCY 4 cut(s) 23, 125, 158, 345
DpnI GATC 2 cut(s) 138, 194
DpnII GATC 2 cut(s) 136, 192
Eco130I CCWWGG 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 1 cut(s) 182
FaiI YATR 4 cut(s) 65, 180, 197, 325
FaqI GGGAC 1 cut(s) 282
FatI CATG 1 cut(s) 178
FblI GTMKAC 1 cut(s) 324
FokI GGATG 3 cut(s) 116, 152, 332
FspBI CTAG 2 cut(s) 134, 204
HapII CCGG 1 cut(s) 29
Hin1II CATG 1 cut(s) 182
HpaII CCGG 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 1 cut(s) 77
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 1 cut(s) 325
HpyCH4III ACNGT 2 cut(s) 93, 238
HpyCH4V TGCA 1 cut(s) 260
Hsp92II CATG 1 cut(s) 182
Kzo9I GATC 2 cut(s) 136, 192
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 5 cut(s) 42, 86, 140, 270, 297
MaeI CTAG 2 cut(s) 134, 204
MaeIII GTNAC 1 cut(s) 54
MalI GATC 2 cut(s) 138, 194
MboI GATC 2 cut(s) 136, 192
MboII GAAGA 1 cut(s) 167
MluCI AATT 1 cut(s) 215
MmeI TCCRAC 2 cut(s) 14, 169
MnlI CCTC 2 cut(s) 36, 95
MseI TTAA 3 cut(s) 189, 249, 329
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 2 cut(s) 30, 285
MvaI CCWGG 1 cut(s) 285
NciI CCSGG 1 cut(s) 30
NdeII GATC 2 cut(s) 136, 192
NlaIII CATG 1 cut(s) 182
NlaIV GGNNCC 2 cut(s) 24, 298
NmuCI GTSAC 1 cut(s) 54
PagI TCATGA 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 2 cut(s) 24, 298
PspPI GGNCC 1 cut(s) 296
RseI CAYNNNNRTG 1 cut(s) 177
SaqAI TTAA 3 cut(s) 189, 249, 329
Sau3AI GATC 2 cut(s) 136, 192
Sau96I GGNCC 1 cut(s) 296
ScrFI CCNGG 2 cut(s) 30, 285
SetI ASST 3 cut(s) 153, 209, 347
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 177
Sse9I AATT 1 cut(s) 215
SspMI CTAG 2 cut(s) 134, 204
StyD4I CCNGG 2 cut(s) 28, 283
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 2 cut(s) 93, 238
TaqI TCGA 1 cut(s) 272
TasI AATT 1 cut(s) 215
Tru1I TTAA 3 cut(s) 189, 249, 329
Tru9I TTAA 3 cut(s) 189, 249, 329
TseFI GTSAC 1 cut(s) 54
Tsp45I GTSAC 1 cut(s) 54
TspDTI ATGAA 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 296
XapI RAATTY 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 324
XspI CTAG 2 cut(s) 134, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.