Rh6DG223000

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
39868622 .. 39869585
964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG223000.1

Sequence Viewer

Length: 873 bp
ATGGCCATGGCTTCAGCTGCAATAGACCTTTTGCTTGGGAAAATAGTGTCATTTCTTGACGACCAATTGTCACTGTTAGGAGGAGTTCATGATGAACTTGAAGAAATCAAGCGCGAGCTTATAGTCATGAAAGACTTCTTGGAGGATGCAGAAAGAACCGGTGTTGTCAGTGAAGTGGAGAAAACATGGGTGGCGAATGTGAGGGACGTTTCCGTAAACGTTGAAGACTTCATTGACGAGTTCACCTACCACATCAACAACCAGAGAAGTTGGAGTCCATTTACAAGAACGCTTCGTAAATCCCTTCGCTTCCCTAAGAATCTTTGGGAGAGGCATCGGATTGCCACAAAGTTGCAGAAGATCATCAAAATTATCAAAGCCTTTCCAGAGAGAAGCCTACGCAACGGAGTTAAACCTATAGAAGATGCTAAAGAGAAGTCGGTCACAATGTTGTTGTCTTCACAAGCTCAAAGAACTGTGATTTCTGTTGTTGGAATGGGTGGCTCTGGCAAGTCTACCTTGGTTGCAAAGACCTTCAATGGCCAGACTGTAAAGGAACATTTCGATTGCTGTGCGTGGATTACTGTCTCGCAAACGTACACGGTTGAAGATCTACTCAGAGTAATCATGAAGGAGCTTCTCCGAGCAGTGAAGGAGCAGATTCCAGTAGACTTGAGCGACATGAGCTATTCACATTTGGTGGAAATGCTGGCCAGCTATTTGAAGGAAAAGAGGTACATGATTGTCTTAGATGATGTGTGGGATATCAATCTTTGGAGAAAAATAAGTGCGGCACTTCCAGATGGACCACATGGAAGCCGGGTCATGCTTACAACTCGTAAAGAAAACATTGCTTCTTTTGTAAAACCATAA

Protein Analysis

290

Amino Acids

33.08

Weight (kDa)

8.39

Isoelectric Point (pI)

35.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 8 - 93 4.6e-22 Rx N-terminal domain
NB-ARC PF00931 142 - 289 4e-40 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 515, 669
AccII CGCG 1 cut(s) 114
AciI CCGC 1 cut(s) 791
AclI AACGTT 1 cut(s) 219
AcoI YGGCCR 3 cut(s) 3, 541, 711
AfaI GTAC 2 cut(s) 599, 737
AgeI ACCGGT 1 cut(s) 158
AgsI TTSAA 5 cut(s) 101, 224, 538, 608, 724
AhdI GACNNNNNGTC 1 cut(s) 67
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 6 cut(s) 17, 118, 467, 637, 687, 717
AluI AGCT 6 cut(s) 17, 118, 467, 637, 687, 717
Alw26I GTCTC 1 cut(s) 592
AoxI GGCC 3 cut(s) 3, 541, 711
ApeKI GCWGC 1 cut(s) 17
AsiGI ACCGGT 1 cut(s) 158
Asp700I GAANNNNTTC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 806
AsuC2I CCSGG 1 cut(s) 821
AsuHPI GGTGA 1 cut(s) 235
AvaII GGWCC 1 cut(s) 806
BalI TGGCCA 3 cut(s) 5, 543, 713
BbsI GAAGAC 2 cut(s) 231, 450
BbvI GCAGC 1 cut(s) 4
BccI CCATC 1 cut(s) 797
BcgI CGANNNNNNTGC 2 cut(s) 554, 588
BcnI CCSGG 1 cut(s) 821
BcoDI GTCTC 1 cut(s) 592
BfmI CTRYAG 1 cut(s) 417
BglII AGATCT 1 cut(s) 610
BisI GCNGC 2 cut(s) 18, 792
BlsI GCNGC 2 cut(s) 19, 793
Bme1390I CCNGG 1 cut(s) 821
Bme18I GGWCC 1 cut(s) 806
BmeRI GACNNNNNGTC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 806
BmrFI CCNGG 1 cut(s) 821
BmsI GCATC 3 cut(s) 136, 343, 415
BpiI GAAGAC 2 cut(s) 231, 450
BpuEI CTTGAG 1 cut(s) 694
BpuMI CCSGG 1 cut(s) 821
BsaBI GATNNNNATC 1 cut(s) 768
BsaJI CCNNGG 2 cut(s) 6, 519
BsaWI WCCGGW 1 cut(s) 158
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 665
Bse3DI GCAATG 1 cut(s) 849
Bse8I GATNNNNATC 1 cut(s) 768
BseDI CCNNGG 2 cut(s) 6, 519
BseGI GGATG 1 cut(s) 151
BseJI GATNNNNATC 1 cut(s) 768
BseMI GCAATG 1 cut(s) 849
BseMII CTCAG 1 cut(s) 631
BseNI ACTGG 1 cut(s) 665
BseRI GAGGAG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 3 cut(s) 5, 543, 713
BshTI ACCGGT 1 cut(s) 158
BsiSI CCGG 2 cut(s) 159, 820
BslFI GGGAC 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 592
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 3 cut(s) 5, 543, 713
Bsp143I GATC 2 cut(s) 360, 610
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 1 cut(s) 791
BspANI GGCC 3 cut(s) 5, 543, 713
BspCNI CTCAG 1 cut(s) 630
BspFNI CGCG 1 cut(s) 114
BspHI TCATGA 3 cut(s) 88, 126, 627
BsrDI GCAATG 1 cut(s) 849
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 1 cut(s) 665
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 6, 519
BssMI GATC 2 cut(s) 360, 610
BssT1I CCWWGG 2 cut(s) 6, 519
Bst4CI ACNGT 5 cut(s) 75, 478, 550, 586, 604
BstC8I GCNNGC 3 cut(s) 116, 711, 715
BstDEI CTNAG 3 cut(s) 315, 617, 748
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 1 cut(s) 114
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 2 cut(s) 363, 613
BstMAI GTCTC 1 cut(s) 592
BstMBI GATC 2 cut(s) 360, 610
BstMWI GCNNNNNNNGC 2 cut(s) 17, 684
BstSCI CCNGG 1 cut(s) 819
BstSFI CTRYAG 1 cut(s) 417
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 4
BstV2I GAAGAC 2 cut(s) 231, 450
BstX2I RGATCY 1 cut(s) 610
BstYI RGATCY 1 cut(s) 610
BsuRI GGCC 3 cut(s) 5, 543, 713
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 3 cut(s) 71, 175, 654
Cac8I GCNNGC 3 cut(s) 116, 711, 715
CciI TCATGA 3 cut(s) 88, 126, 627
CfoI GCGC 1 cut(s) 114
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 806
Csp6I GTAC 2 cut(s) 598, 736
CspAI ACCGGT 1 cut(s) 158
CviAII CATG 9 cut(s) 7, 89, 127, 186, 628, 682, 739, 812, 826
CviQI GTAC 2 cut(s) 598, 736
DdeI CTNAG 3 cut(s) 315, 617, 748
DpnI GATC 2 cut(s) 362, 612
DpnII GATC 2 cut(s) 360, 610
DriI GACNNNNNGTC 1 cut(s) 67
EaeI YGGCCR 3 cut(s) 3, 541, 711
Eam1105I GACNNNNNGTC 1 cut(s) 67
Eco130I CCWWGG 2 cut(s) 6, 519
Eco32I GATATC 1 cut(s) 766
Eco47I GGWCC 1 cut(s) 806
EcoRV GATATC 1 cut(s) 766
EcoT14I CCWWGG 2 cut(s) 6, 519
ErhI CCWWGG 2 cut(s) 6, 519
FaeI CATG 9 cut(s) 10, 92, 130, 189, 631, 685, 742, 815, 829
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FaqI GGGAC 1 cut(s) 218
FatI CATG 9 cut(s) 6, 88, 126, 185, 627, 681, 738, 811, 825
FblI GTMKAC 2 cut(s) 515, 669
Fnu4HI GCNGC 2 cut(s) 18, 792
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 2 cut(s) 18, 792
GlaI GCGC 1 cut(s) 113
GluI GCNGC 2 cut(s) 18, 792
HaeIII GGCC 3 cut(s) 5, 543, 713
HapII CCGG 2 cut(s) 159, 820
HhaI GCGC 1 cut(s) 114
Hin1II CATG 9 cut(s) 10, 92, 130, 189, 631, 685, 742, 815, 829
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 3 cut(s) 274, 319, 661
HpaII CCGG 2 cut(s) 159, 820
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 5 cut(s) 217, 243, 516, 600, 670
Hpy188I TCNGA 3 cut(s) 339, 620, 644
Hpy188III TCNNGA 6 cut(s) 56, 89, 127, 386, 628, 800
Hpy8I GTNNAC 5 cut(s) 217, 243, 516, 600, 670
HpyAV CCTTC 5 cut(s) 314, 544, 625, 646, 718
HpyCH4III ACNGT 5 cut(s) 75, 478, 550, 586, 604
HpyCH4IV ACGT 3 cut(s) 207, 219, 596
HpyCH4V TGCA 4 cut(s) 20, 149, 355, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 684
HpyF3I CTNAG 3 cut(s) 315, 617, 748
HpySE526I ACGT 3 cut(s) 207, 219, 596
Hsp92II CATG 9 cut(s) 10, 92, 130, 189, 631, 685, 742, 815, 829
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 360, 610
LmnI GCTCC 2 cut(s) 634, 655
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 3 cut(s) 136, 343, 415
MaeII ACGT 3 cut(s) 207, 219, 596
MaeIII GTNAC 2 cut(s) 69, 442
MalI GATC 2 cut(s) 362, 612
MboI GATC 2 cut(s) 360, 610
MboII GAAGA 6 cut(s) 113, 236, 370, 434, 450, 620
MfeI CAATTG 1 cut(s) 65
MflI RGATCY 1 cut(s) 610
MlsI TGGCCA 3 cut(s) 5, 543, 713
MluCI AATT 2 cut(s) 65, 369
MluNI TGGCCA 3 cut(s) 5, 543, 713
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 2 cut(s) 251, 472
MnlI CCTC 5 cut(s) 74, 136, 195, 324, 726
Mox20I TGGCCA 3 cut(s) 5, 543, 713
MroXI GAANNNNTTC 1 cut(s) 134
MscI TGGCCA 3 cut(s) 5, 543, 713
MseI TTAA 1 cut(s) 411
Msp20I TGGCCA 3 cut(s) 5, 543, 713
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 2 cut(s) 159, 820
MspR9I CCNGG 1 cut(s) 821
MunI CAATTG 1 cut(s) 65
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 17, 684
NciI CCSGG 1 cut(s) 821
NcoI CCATGG 1 cut(s) 6
NdeII GATC 2 cut(s) 360, 610
NlaIII CATG 9 cut(s) 10, 92, 130, 189, 631, 685, 742, 815, 829
NmuCI GTSAC 2 cut(s) 69, 442
PagI TCATGA 3 cut(s) 88, 126, 627
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 2 cut(s) 319, 661
PinAI ACCGGT 1 cut(s) 158
PkrI GCNGC 2 cut(s) 19, 793
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
Psp1406I AACGTT 1 cut(s) 219
PspPI GGNCC 1 cut(s) 806
PsuI RGATCY 1 cut(s) 610
PvuII CAGCTG 1 cut(s) 17
RsaI GTAC 2 cut(s) 599, 737
RsaNI GTAC 2 cut(s) 598, 736
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 2 cut(s) 18, 792
Sau3AI GATC 2 cut(s) 360, 610
Sau96I GGNCC 1 cut(s) 806
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 1 cut(s) 821
SfaNI GCATC 3 cut(s) 136, 343, 415
SfcI CTRYAG 1 cut(s) 417
SinI GGWCC 1 cut(s) 806
SmlI CTYRAG 1 cut(s) 673
SmoI CTYRAG 1 cut(s) 673
Sse9I AATT 2 cut(s) 65, 369
SsiI CCGC 1 cut(s) 791
StyD4I CCNGG 1 cut(s) 819
StyI CCWWGG 2 cut(s) 6, 519
TaaI ACNGT 5 cut(s) 75, 478, 550, 586, 604
TaiI ACGT 3 cut(s) 210, 222, 599
TaqI TCGA 1 cut(s) 564
TaqII GACCGA 1 cut(s) 430
TasI AATT 2 cut(s) 65, 369
TauI GCSGC 1 cut(s) 794
TfiI GAWTC 2 cut(s) 319, 661
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 3 cut(s) 78, 175, 654
TseFI GTSAC 2 cut(s) 69, 442
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 2 cut(s) 69, 442
TspDTI ATGAA 5 cut(s) 77, 108, 143, 220, 644
TspGWI ACGGA 2 cut(s) 202, 420
TspRI CASTG 3 cut(s) 78, 175, 654
VpaK11BI GGWCC 1 cut(s) 806
XmiI GTMKAC 2 cut(s) 515, 669
XmnI GAANNNNTTC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.