MD06G1154100.v1.1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000110
Physical Location & Seq
Forward (+)
29747852 .. 29750045
2194 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1154100.v1.1.491

Sequence Viewer

Length: 2091 bp
ATGGAGTCAGCTGCATCACTATTGATTGGGAAAATTGCGTTCATTCTTGAGAACGAAGCATCTTCCATAGCGGCAGTCCGTGATGAAGTTGATGAGCTTAAGCTGGAGCTCATAAGCATGAAATCTTTCTTAATAGATGCTGAAGGCAAGGAACCACAAACAGAAGGAGAGAAAACGTGGGTTACAAGCGTCAGAGATTTGACCTGCGATGCTGAAAATGTCATTGATGAGTTCATGTATCACATATATGACAAGAAGAGTGCGACTCCATTTGCAAAATTGCTCCACAGAACCATTTACTTTCCAAAGAATCTTTGGCATCAGCATCGAATAGCCAAAAAATTACAGAAAATCACAAAAAAGATCAAAGCCATTCCAGAGAGGAATGAGAGATATGGTGTCTCTACAATAGAAGGAACAACTTCGGATAGTGTTCCCAGATGGGTGAAGAACAAAGCCGAGTCTTCTCTTTATATTATGGAAGACGAACTAATCGGGATTGAAGACAAGAAGCAAAGGTTAATGGGGTTATTGATGAATGGAGAGGAAAATGAAATGGTTGTGTCTATAGTCGGGATGGGAGGATCAGGCAAGACAACTCTTGTTGCCAATACCTTCAACAACGAAAATGTAAAGCGGCATTTTGACTGTTATGCATGGATCACTGTTTCTCAAACTTTTGTGATCGAAGACTTATTAAAAAATCTGATCAAGCAATTCCACCAAGGAAGAAAGGAAGAGGTGACTGCACAATTGGATTCCATGAGTTACAAAGAATTGTTAGAGATGTTGTCGACATACTTGAAGTCTAAAAGGTACCTAGTTGTATTGGATGATGTGTGGGACATTAAACTTTGGCAAGAAATAAGGATACCACTTCTTAATAGACATCATGGAAGTCGAATCATGCTTACAACTAGAAAGAAAGACATAGCATTCTATTCTTTTGAAGTTGAAAGTCGTCCTATTGAAATTGAACCCTTGGGAAACAATGAAGCTTGGGAGCTCTTTAGCAAGAAAGCATTCTCAACTTACGATAATAAATCTTGTCCACCAGAGCTTGAATCCTTAGCATGGAAACTTGTGGATAAGTGTGAAGGCCTACCTCTGGCAGTGGTAACTTTAGGTGGTCTAATGTCTTCCAAGAGGTCATCATCGGAATGGAGAAGCGTATATAACAGCTTAAATTGGCACTTGACTAACCATCCTATGCTGGAACCAATGAGCAGCATCTTGTTGTGGATAGCTGAAGGGTTTGTTGAACCAATTGATGGGGTCACACCAGAAGAAGTTGCAGAGGGTTATCTTGTGGAACTGATTGTTCGTAGCATTCTACAAGTTGAAAAGCATGAAACTGTAGGACTAAGAGCATGTAAGATGCATGATCTTGTGCGTGAGCTTGCTTTGTCGATATCAAAGAAGGAAAATTTCGGTGCTACGTGTGTTGGCAGAGAAATAATAGATAAAGCTGAAATCCGCCGATTGTCAATTCAAACAACTGAAGGAGAAATTAATTCTTGCACAGGTATGTCAGAGCTTCGCTCATTTCTTGTCTTTGGCGCGTTAGAGAAATTGCCTTCTGGATTCAAGTTGTTGAGAGTTCTAGATGTGCAGGATGCTCCAATTGATAGATTTCCAGATGAACTAGTGTACTTGTTCAACTTAAGATATTTAAATTTGAAGAAAACTTTGATTAAGGAGCTTCCAGAATCCATCGGAAGGCTTCACAATCTTCAAACGTTGAACATTTGTGACAGCAAGATAAAGGCACTTCCAAAAGCAATCTCCAAGTTAGTAAACCTACGCCATCTAATCATGTATAGTTACATTGGTGATTTGGCAGTCTTTAGACATGTCAGTGGGACTAAAACAGCATCGGATCTAAGTAAATTACAGAAACTGCAAGTTTTGGATTCTGTTGAATCAGAAGGAAAGATTATTAAAGGCATCAGGAATATGACCCAACTTACAAGCCTCGGTATTACAAATGTGAAAGCAAGTGACGAGATGGACCTCTGTGACTCCCTTCAAAAGTTAGAGCTCCTTCACGATTTGTCTTTAATGGCAAGTGATGAAGAGGAGTTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

697

Amino Acids

79.23

Weight (kDa)

5.86

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 87 3.7e-20 Rx N-terminal domain
NB-ARC PF00931 168 - 344 6.4e-48 NB-ARC domain
WHD_DRP PF23559 410 - 468 1.6e-14 Disease resistance protein Winged helix domain
LRR_14 PF23598 513 - 691 1.7e-27 Leucine-rich repeat region
LRR_8 PF13855 554 - 606 8e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 212
Acc65I GGTACC 1 cut(s) 816
AccB1I GGYRCC 1 cut(s) 816
AccB7I CCANNNNNTGG 1 cut(s) 1271
AccI GTMKAC 1 cut(s) 794
AccII CGCG 1 cut(s) 1562
AciI CCGC 3 cut(s) 71, 637, 1477
AclI AACGTT 1 cut(s) 1739
AclWI GGATC 3 cut(s) 592, 668, 1887
AcsI RAATTY 2 cut(s) 1426, 1675
AcuI CTGAAG 3 cut(s) 162, 1269, 1521
AfaI GTAC 2 cut(s) 818, 1652
AfiI CCNNNNNNNGG 4 cut(s) 1074, 1108, 1271, 1719
AflII CTTAAG 2 cut(s) 98, 1663
AflIII ACRYGT 2 cut(s) 1439, 1852
AhlI ACTAGT 1 cut(s) 1645
Alw21I GWGCWC 3 cut(s) 111, 1008, 2043
Alw26I GTCTC 1 cut(s) 406
AlwI GGATC 3 cut(s) 592, 668, 1887
AlwNI CAGNNNCTG 1 cut(s) 1900
AoxI GGCC 1 cut(s) 1099
ApeKI GCWGC 2 cut(s) 11, 1227
ApoI RAATTY 2 cut(s) 1426, 1675
AseI ATTAAT 1 cut(s) 1512
Asp700I GAANNNNTTC 3 cut(s) 125, 421, 1022
Asp718I GGTACC 1 cut(s) 816
AspLEI GCGC 1 cut(s) 1562
AspS9I GGNCC 1 cut(s) 2011
AsuHPI GGTGA 3 cut(s) 457, 754, 1844
AvaII GGWCC 1 cut(s) 2011
BanI GGYRCC 1 cut(s) 816
BanII GRGCYC 3 cut(s) 111, 1008, 2043
BbsI GAAGAC 5 cut(s) 456, 489, 510, 696, 1131
Bbv12I GWGCWC 3 cut(s) 111, 1008, 2043
BbvI GCAGC 1 cut(s) 1239
BccI CCATC 7 cut(s) 435, 571, 1212, 1265, 1721, 1815, 2002
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciVI GTATCC 1 cut(s) 864
BclI TGATCA 1 cut(s) 708
BcoDI GTCTC 1 cut(s) 406
BcuI ACTAGT 1 cut(s) 1645
BfaI CTAG 4 cut(s) 821, 918, 1604, 1646
BfmI CTRYAG 2 cut(s) 567, 1356
BfrI CTTAAG 2 cut(s) 98, 1663
BfuAI ACCTGC 1 cut(s) 212
BfuI GTATCC 1 cut(s) 864
BisI GCNGC 4 cut(s) 12, 72, 638, 1228
BlsI GCNGC 4 cut(s) 13, 73, 639, 1229
Bme18I GGWCC 1 cut(s) 2011
BmgT120I GGNCC 1 cut(s) 2011
BmiI GGNNCC 3 cut(s) 153, 818, 1218
BpiI GAAGAC 5 cut(s) 456, 489, 510, 696, 1131
BplI GAGNNNNNCTC 4 cut(s) 250, 282, 1526, 1558
BpmI CTGGAG 1 cut(s) 125
Bpu10I CCTNAGC 1 cut(s) 1069
BpuEI CTTGAG 1 cut(s) 68
BsaAI YACGTR 1 cut(s) 1440
BsaJI CCNNGG 3 cut(s) 724, 981, 1975
Bsc4I CCNNNNNNNGG 4 cut(s) 1074, 1108, 1271, 1719
BseDI CCNNGG 3 cut(s) 724, 981, 1975
BseGI GGATG 4 cut(s) 582, 838, 1204, 1621
BseLI CCNNNNNNNGG 4 cut(s) 1074, 1108, 1271, 1719
BseXI GCAGC 1 cut(s) 1239
BsgI GTGCAG 2 cut(s) 732, 1631
Bsh1236I CGCG 1 cut(s) 1562
BshFI GGCC 1 cut(s) 1101
BshNI GGYRCC 1 cut(s) 816
BsiHKAI GWGCWC 3 cut(s) 111, 1008, 2043
BslFI GGGAC 2 cut(s) 857, 1876
BslI CCNNNNNNNGG 4 cut(s) 1074, 1108, 1271, 1719
BsmAI GTCTC 1 cut(s) 406
BsmFI GGGAC 2 cut(s) 857, 1876
BsmI GAATGC 3 cut(s) 935, 1022, 1329
BsnI GGCC 1 cut(s) 1101
Bsp1286I GDGCHC 3 cut(s) 111, 1008, 2043
Bsp143I GATC 7 cut(s) 363, 584, 660, 684, 708, 1384, 1879
BspACI CCGC 3 cut(s) 71, 637, 1477
BspANI GGCC 1 cut(s) 1101
BspFNI CGCG 1 cut(s) 1562
BspLI GGNNCC 3 cut(s) 153, 818, 1218
BspMI ACCTGC 1 cut(s) 212
BspPI GGATC 3 cut(s) 592, 668, 1887
BspT107I GGYRCC 1 cut(s) 816
BspTI CTTAAG 2 cut(s) 98, 1663
BssECI CCNNGG 3 cut(s) 724, 981, 1975
BssMI GATC 7 cut(s) 363, 584, 660, 684, 708, 1384, 1879
BssT1I CCWWGG 2 cut(s) 724, 981
Bst4CI ACNGT 3 cut(s) 650, 667, 1357
Bst6I CTCTTC 3 cut(s) 251, 732, 2070
BstAFI CTTAAG 2 cut(s) 98, 1663
BstBAI YACGTR 1 cut(s) 1440
BstC8I GCNNGC 1 cut(s) 1401
BstDEI CTNAG 3 cut(s) 1069, 1364, 1883
BstF5I GGATG 4 cut(s) 582, 838, 1204, 1621
BstFNI CGCG 1 cut(s) 1562
BstHHI GCGC 1 cut(s) 1562
BstKTI GATC 7 cut(s) 366, 587, 663, 687, 711, 1387, 1882
BstMAI GTCTC 1 cut(s) 406
BstMBI GATC 7 cut(s) 363, 584, 660, 684, 708, 1384, 1879
BstNSI RCATGY 2 cut(s) 1374, 1856
BstSFI CTRYAG 2 cut(s) 567, 1356
BstUI CGCG 1 cut(s) 1562
BstV1I GCAGC 1 cut(s) 1239
BstV2I GAAGAC 5 cut(s) 456, 489, 510, 696, 1131
BstX2I RGATCY 1 cut(s) 1879
BstYI RGATCY 1 cut(s) 1879
BsuI GTATCC 1 cut(s) 864
BsuRI GGCC 1 cut(s) 1101
BtgZI GCGATG 1 cut(s) 222
BtsCI GGATG 4 cut(s) 582, 838, 1204, 1621
BtsI GCAGTG 1 cut(s) 1119
BtsIMutI CAGTG 3 cut(s) 663, 1119, 1864
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 1 cut(s) 1401
CaiI CAGNNNCTG 1 cut(s) 1900
CfoI GCGC 1 cut(s) 1562
Cfr13I GGNCC 1 cut(s) 2011
CseI GACGC 1 cut(s) 178
Csp6I GTAC 2 cut(s) 817, 1651
CviQI GTAC 2 cut(s) 817, 1651
DdeI CTNAG 3 cut(s) 1069, 1364, 1883
DpnI GATC 7 cut(s) 365, 586, 662, 686, 710, 1386, 1881
DpnII GATC 7 cut(s) 363, 584, 660, 684, 708, 1384, 1879
DraI TTTAAA 1 cut(s) 1674
Eam1104I CTCTTC 3 cut(s) 251, 732, 2070
EarI CTCTTC 3 cut(s) 251, 732, 2070
EciI GGCGGA 1 cut(s) 1466
Ecl136II GAGCTC 3 cut(s) 109, 1006, 2041
Eco130I CCWWGG 2 cut(s) 724, 981
Eco147I AGGCCT 1 cut(s) 1101
Eco24I GRGCYC 3 cut(s) 111, 1008, 2043
Eco32I GATATC 1 cut(s) 1413
Eco47I GGWCC 1 cut(s) 2011
Eco53kI GAGCTC 3 cut(s) 109, 1006, 2041
Eco57I CTGAAG 3 cut(s) 162, 1269, 1521
EcoICRI GAGCTC 3 cut(s) 109, 1006, 2041
EcoRV GATATC 1 cut(s) 1413
EcoT14I CCWWGG 2 cut(s) 724, 981
EcoT22I ATGCAT 2 cut(s) 658, 1383
EcoT38I GRGCYC 3 cut(s) 111, 1008, 2043
ErhI CCWWGG 2 cut(s) 724, 981
FaqI GGGAC 2 cut(s) 857, 1876
FbaI TGATCA 1 cut(s) 708
FblI GTMKAC 1 cut(s) 794
Fnu4HI GCNGC 4 cut(s) 12, 72, 638, 1228
FokI GGATG 4 cut(s) 589, 845, 1191, 1628
FriOI GRGCYC 3 cut(s) 111, 1008, 2043
Fsp4HI GCNGC 4 cut(s) 12, 72, 638, 1228
FspBI CTAG 4 cut(s) 821, 918, 1604, 1646
GlaI GCGC 1 cut(s) 1561
GluI GCNGC 4 cut(s) 12, 72, 638, 1228
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 1 cut(s) 1101
HgaI GACGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 1562
Hin6I GCGC 1 cut(s) 1560
HinP1I GCGC 1 cut(s) 1560
HincII GTYRAC 1 cut(s) 795
HindII GTYRAC 1 cut(s) 795
HindIII AAGCTT 1 cut(s) 996
HphI GGTGA 3 cut(s) 457, 754, 1844
Hpy166II GTNNAC 4 cut(s) 795, 1052, 1651, 1798
Hpy188I TCNGA 8 cut(s) 194, 427, 708, 1159, 1534, 1718, 1879, 1927
Hpy8I GTNNAC 4 cut(s) 795, 1052, 1651, 1798
HpyCH4III ACNGT 3 cut(s) 650, 667, 1357
HpyCH4IV ACGT 3 cut(s) 176, 1439, 1739
HpyCH4V TGCA 9 cut(s) 14, 275, 656, 749, 1295, 1381, 1521, 1612, 1903
HpyF3I CTNAG 3 cut(s) 1069, 1364, 1883
HpySE526I ACGT 3 cut(s) 176, 1439, 1739
HspAI GCGC 1 cut(s) 1560
KpnI GGTACC 1 cut(s) 820
Ksp22I TGATCA 1 cut(s) 708
Kzo9I GATC 7 cut(s) 363, 584, 660, 684, 708, 1384, 1879
LmnI GCTCC 6 cut(s) 106, 288, 1003, 1624, 1699, 2046
Lsp1109I GCAGC 1 cut(s) 1239
MaeI CTAG 4 cut(s) 821, 918, 1604, 1646
MaeII ACGT 3 cut(s) 176, 1439, 1739
MaeIII GTNAC 9 cut(s) 181, 742, 767, 1117, 1276, 1751, 1823, 2000, 2018
MalI GATC 7 cut(s) 365, 586, 662, 686, 710, 1386, 1881
MboI GATC 7 cut(s) 363, 584, 660, 684, 708, 1384, 1879
MfeI CAATTG 3 cut(s) 752, 1266, 1623
MflI RGATCY 1 cut(s) 1879
MhlI GDGCHC 3 cut(s) 111, 1008, 2043
MlyI GAGTC 4 cut(s) 14, 259, 470, 2015
Mph1103I ATGCAT 2 cut(s) 658, 1383
MroXI GAANNNNTTC 3 cut(s) 125, 421, 1022
MslI CAYNNNNRTG 5 cut(s) 116, 246, 1159, 1526, 1857
MspA1I CMGCKG 1 cut(s) 11
MspCI CTTAAG 2 cut(s) 98, 1663
MunI CAATTG 3 cut(s) 752, 1266, 1623
Mva1269I GAATGC 3 cut(s) 935, 1022, 1329
MvnI CGCG 1 cut(s) 1562
NdeII GATC 7 cut(s) 363, 584, 660, 684, 708, 1384, 1879
NlaIV GGNNCC 3 cut(s) 153, 818, 1218
NmeAIII GCCGAG 1 cut(s) 484
NmuCI GTSAC 5 cut(s) 742, 1276, 1751, 2000, 2018
NsiI ATGCAT 2 cut(s) 658, 1383
NspI RCATGY 2 cut(s) 1374, 1856
PceI AGGCCT 1 cut(s) 1101
PciI ACATGT 1 cut(s) 1852
PctI GAATGC 3 cut(s) 935, 1022, 1329
PdmI GAANNNNTTC 3 cut(s) 125, 421, 1022
PfeI GAWTC 8 cut(s) 310, 758, 903, 1064, 1584, 1709, 1913, 1922
PflMI CCANNNNNTGG 1 cut(s) 1271
PkrI GCNGC 4 cut(s) 13, 73, 639, 1229
PleI GAGTC 4 cut(s) 13, 259, 469, 2015
PpsI GAGTC 4 cut(s) 13, 259, 469, 2015
Ppu21I YACGTR 1 cut(s) 1440
PscI ACATGT 1 cut(s) 1852
PshBI ATTAAT 1 cut(s) 1512
Psp124BI GAGCTC 3 cut(s) 111, 1008, 2043
Psp1406I AACGTT 1 cut(s) 1739
PspN4I GGNNCC 3 cut(s) 153, 818, 1218
PspPI GGNCC 1 cut(s) 2011
PstNI CAGNNNCTG 1 cut(s) 1900
PsuI RGATCY 1 cut(s) 1879
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 2 cut(s) 818, 1652
RsaNI GTAC 2 cut(s) 817, 1651
RseI CAYNNNNRTG 5 cut(s) 116, 246, 1159, 1526, 1857
SacI GAGCTC 3 cut(s) 111, 1008, 2043
SalI GTCGAC 1 cut(s) 793
SatI GCNGC 4 cut(s) 12, 72, 638, 1228
Sau3AI GATC 7 cut(s) 363, 584, 660, 684, 708, 1384, 1879
Sau96I GGNCC 1 cut(s) 2011
SchI GAGTC 4 cut(s) 14, 259, 470, 2015
SduI GDGCHC 3 cut(s) 111, 1008, 2043
SfcI CTRYAG 2 cut(s) 567, 1356
SinI GGWCC 1 cut(s) 2011
SmiI ATTTAAAT 1 cut(s) 1674
SmiMI CAYNNNNRTG 5 cut(s) 116, 246, 1159, 1526, 1857
SmlI CTYRAG 3 cut(s) 47, 98, 1663
SmoI CTYRAG 3 cut(s) 47, 98, 1663
SpeI ACTAGT 1 cut(s) 1645
SseBI AGGCCT 1 cut(s) 1101
SsiI CCGC 3 cut(s) 71, 637, 1477
SspMI CTAG 4 cut(s) 821, 918, 1604, 1646
SstI GAGCTC 3 cut(s) 111, 1008, 2043
StuI AGGCCT 1 cut(s) 1101
StyI CCWWGG 2 cut(s) 724, 981
SwaI ATTTAAAT 1 cut(s) 1674
TaaI ACNGT 3 cut(s) 650, 667, 1357
TaiI ACGT 3 cut(s) 179, 1442, 1742
TaqI TCGA 5 cut(s) 328, 687, 794, 901, 1409
TatI WGTACW 1 cut(s) 1650
TauI GCSGC 2 cut(s) 74, 640
TfiI GAWTC 8 cut(s) 310, 758, 903, 1064, 1584, 1709, 1913, 1922
TscAI CASTG 3 cut(s) 670, 1119, 1864
TseFI GTSAC 5 cut(s) 742, 1276, 1751, 2000, 2018
TseI GCWGC 2 cut(s) 11, 1227
Tsp45I GTSAC 5 cut(s) 742, 1276, 1751, 2000, 2018
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 3 cut(s) 670, 1119, 1864
Van91I CCANNNNNTGG 1 cut(s) 1271
Vha464I CTTAAG 2 cut(s) 98, 1663
VpaK11BI GGWCC 1 cut(s) 2011
VspI ATTAAT 1 cut(s) 1512
XapI RAATTY 2 cut(s) 1426, 1675
XbaI TCTAGA 1 cut(s) 1603
XceI RCATGY 2 cut(s) 1374, 1856
XcmI CCANNNNNNNNNTGG 1 cut(s) 312
XmiI GTMKAC 1 cut(s) 794
XmnI GAANNNNTTC 3 cut(s) 125, 421, 1022
XspI CTAG 4 cut(s) 821, 918, 1604, 1646
Zsp2I ATGCAT 2 cut(s) 658, 1383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.