RchiOBHm_Chr2g0135361

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
52426130 .. 52426483
354 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50627

Sequence Viewer

Length: 354 bp
ATGAAAGCCTTCCTAAATGATGTTGAGGGAAAGAAAGCACAATCAGAGGGAGGGGAGACATGGATAACAAGCGTGAGAGACTCTGTCTATGACGTTGAAGATATCATTGATGAATTCACATATCACATCTATAAGCAGGGACGTGGAGTTCGAGTTGCAAGGTGTCTTCACCAAACATTTTATATTCCAAAGAATTTTTGGTATAGGCGTCAAATCGCTAAAAAATTAGACAAAATCAAAGGAACCATTAAAGACATTTCGGAGAGGAATCAAACATATGGTGTTAGTGTTGTTACTGCTCTAGAAGGAACGAGTACTTCTCATGATCATATTCAAAAATGGATGCGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

13.67

Weight (kDa)

9.21

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 1 - 47 2.9e-12 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 346
AcsI RAATTY 2 cut(s) 113, 193
AcyI GRCGYC 1 cut(s) 208
AfaI GTAC 1 cut(s) 316
AgsI TTSAA 2 cut(s) 98, 335
AjiI CACGTC 1 cut(s) 143
AloI GAACNNNNNNTCC 2 cut(s) 132, 164
Alw26I GTCTC 2 cut(s) 50, 72
ApoI RAATTY 2 cut(s) 113, 193
ArsI GACNNNNNNTTYG 2 cut(s) 132, 164
Asp700I GAANNNNTTC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 158
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 50, 72
BfaI CTAG 1 cut(s) 302
BmcAI AGTACT 1 cut(s) 316
BmgBI CACGTC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 244
BmsI GCATC 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 158
BplI GAGNNNNNCTC 2 cut(s) 304, 336
BsaHI GRCGYC 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
BseGI GGATG 1 cut(s) 348
BslFI GGGAC 1 cut(s) 153
BsmAI GTCTC 2 cut(s) 50, 72
BsmFI GGGAC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 325
BspACI CCGC 1 cut(s) 346
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 244
BssMI GATC 1 cut(s) 325
BssNI GRCGYC 1 cut(s) 208
BstACI GRCGYC 1 cut(s) 208
BstF5I GGATG 1 cut(s) 348
BstKTI GATC 1 cut(s) 328
BstMAI GTCTC 2 cut(s) 50, 72
BstMBI GATC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 158
BtrI CACGTC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 348
CciI TCATGA 1 cut(s) 322
CseI GACGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 315
CviAII CATG 2 cut(s) 60, 323
CviJI RGCY 1 cut(s) 8
CviKI_1 RGCY 1 cut(s) 8
CviQI GTAC 1 cut(s) 315
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
Eco32I GATATC 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 113
EcoRV GATATC 1 cut(s) 103
FaeI CATG 2 cut(s) 63, 326
FaqI GGGAC 1 cut(s) 153
FatI CATG 2 cut(s) 59, 322
FauNDI CATATG 1 cut(s) 277
FbaI TGATCA 1 cut(s) 325
FspBI CTAG 1 cut(s) 302
HgaI GACGC 1 cut(s) 197
Hin1I GRCGYC 1 cut(s) 208
Hin1II CATG 2 cut(s) 63, 326
HinfI GANTC 2 cut(s) 80, 268
HphI GGTGA 1 cut(s) 161
Hpy188I TCNGA 2 cut(s) 46, 262
Hpy188III TCNNGA 2 cut(s) 302, 323
HpyAV CCTTC 2 cut(s) 19, 299
HpyCH4IV ACGT 2 cut(s) 93, 142
HpyCH4V TGCA 1 cut(s) 158
HpySE526I ACGT 2 cut(s) 93, 142
Hsp92I GRCGYC 1 cut(s) 208
Hsp92II CATG 2 cut(s) 63, 326
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 1 cut(s) 325
LpnPI CCDG 1 cut(s) 122
LweI GCATC 1 cut(s) 333
MaeI CTAG 1 cut(s) 302
MaeII ACGT 2 cut(s) 93, 142
MaeIII GTNAC 1 cut(s) 292
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MboII GAAGA 2 cut(s) 110, 158
MluCI AATT 3 cut(s) 113, 193, 224
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 4 cut(s) 19, 40, 44, 258
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 249
NdeI CATATG 1 cut(s) 277
NdeII GATC 1 cut(s) 325
NlaIII CATG 2 cut(s) 63, 326
NlaIV GGNNCC 1 cut(s) 244
PagI TCATGA 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 268
PflFI GACNNNGTC 1 cut(s) 83
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 244
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SaqAI TTAA 1 cut(s) 249
Sau3AI GATC 1 cut(s) 325
ScaI AGTACT 1 cut(s) 316
SchI GAGTC 1 cut(s) 74
SetI ASST 3 cut(s) 96, 145, 164
SfaNI GCATC 1 cut(s) 333
Sse9I AATT 3 cut(s) 113, 193, 224
SsiI CCGC 1 cut(s) 346
SspMI CTAG 1 cut(s) 302
TaiI ACGT 2 cut(s) 96, 145
TaqI TCGA 1 cut(s) 151
TasI AATT 3 cut(s) 113, 193, 224
TatI WGTACW 1 cut(s) 314
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TspDTI ATGAA 2 cut(s) 17, 126
Tth111I GACNNNGTC 1 cut(s) 83
XapI RAATTY 2 cut(s) 113, 193
XbaI TCTAGA 1 cut(s) 301
XcmI CCANNNNNNNNNTGG 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 302
ZrmI AGTACT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.