Rh1DG140600

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000110
Physical Location & Seq
Forward (+)
29725080 .. 29729137
4058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG140600.1

Sequence Viewer

Length: 396 bp
ATGAGTGAGGGAAGGAAGAAGATCGAGTTCTGGTGGTTCTTAAACCGAAGCAAGGATTTAGCAGAGGCTTTACAATGCTTCAACAATGGCAGTGGGGTGGTGCCGAATCTTCAGTTCTTATCCTTGGATAGCTGCAAGGAATTAAAGACATTGCCACATGGTCTTGTATACCATACTCAACTAGAAACACTGAGATTGAACTCTGTTCCTGTGAAACTGCTTATAGAGTCCAAACGAGATGGAGGCGTGGATCGCCAAAGGATCTCCCATAAAGTTGAGAAGTTTGTAAAAGTACATTCTCATCATTCAAGAATAGAAGACCAACTTAAGAGATCACAGGTCCAACTAAATAACTTGGGAGATCAGCTTGGTCTAGATACTTATGGCCGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

131

Amino Acids

15.1

Weight (kDa)

9.39

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 168
AclWI GGATC 2 cut(s) 258, 269
AcoI YGGCCR 1 cut(s) 385
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 52
AflII CTTAAG 1 cut(s) 326
AgsI TTSAA 3 cut(s) 82, 199, 309
AluBI AGCT 2 cut(s) 132, 367
AluI AGCT 2 cut(s) 132, 367
AlwI GGATC 2 cut(s) 258, 269
AoxI GGCC 1 cut(s) 385
ApeKI GCWGC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 340
AvaII GGWCC 1 cut(s) 340
BanI GGYRCC 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 119
BccI CCATC 1 cut(s) 233
BfaI CTAG 2 cut(s) 182, 374
BfrI CTTAAG 1 cut(s) 326
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 1 cut(s) 102
BpiI GAAGAC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 119
BshFI GGCC 1 cut(s) 387
BshNI GGYRCC 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 52
BsnI GGCC 1 cut(s) 387
Bsp143I GATC 5 cut(s) 21, 250, 261, 332, 361
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 2 cut(s) 258, 269
BspT107I GGYRCC 1 cut(s) 100
BspTI CTTAAG 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 5 cut(s) 21, 250, 261, 332, 361
BssNAI GTATAC 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 123
Bst1107I GTATAC 1 cut(s) 169
BstAFI CTTAAG 1 cut(s) 326
BstDEI CTNAG 1 cut(s) 191
BstKTI GATC 5 cut(s) 24, 253, 264, 335, 364
BstMBI GATC 5 cut(s) 21, 250, 261, 332, 361
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BstZ17I GTATAC 1 cut(s) 169
BsuRI GGCC 1 cut(s) 387
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 2 cut(s) 97, 188
Cfr13I GGNCC 1 cut(s) 340
Csp6I GTAC 1 cut(s) 293
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviAII CATG 1 cut(s) 158
CviJI RGCY 4 cut(s) 68, 132, 367, 387
CviKI_1 RGCY 4 cut(s) 68, 132, 367, 387
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 1 cut(s) 191
DpnI GATC 5 cut(s) 23, 252, 263, 334, 363
DpnII GATC 5 cut(s) 21, 250, 261, 332, 361
EaeI YGGCCR 1 cut(s) 385
Eco130I CCWWGG 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 1 cut(s) 161
FaiI YATR 6 cut(s) 159, 169, 174, 224, 270, 384
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FatI CATG 1 cut(s) 157
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 133
FspBI CTAG 2 cut(s) 182, 374
GluI GCNGC 1 cut(s) 133
HaeIII GGCC 1 cut(s) 387
Hin1II CATG 1 cut(s) 161
HinfI GANTC 2 cut(s) 106, 227
Hpy166II GTNNAC 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 309, 374
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
HpyF3I CTNAG 1 cut(s) 191
Hsp92II CATG 1 cut(s) 161
Kzo9I GATC 5 cut(s) 21, 250, 261, 332, 361
LpnPI CCDG 3 cut(s) 16, 222, 323
Lsp1109I GCAGC 1 cut(s) 119
MaeI CTAG 2 cut(s) 182, 374
MalI GATC 5 cut(s) 23, 252, 263, 334, 363
MboI GATC 5 cut(s) 21, 250, 261, 332, 361
MboII GAAGA 4 cut(s) 28, 31, 101, 329
MflI RGATCY 1 cut(s) 261
MluCI AATT 1 cut(s) 140
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 2 cut(s) 58, 236
MseI TTAA 3 cut(s) 41, 143, 327
MspCI CTTAAG 1 cut(s) 326
MwoI GCNNNNNNNGC 1 cut(s) 252
NdeII GATC 5 cut(s) 21, 250, 261, 332, 361
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 1 cut(s) 134
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 340
PsuI RGATCY 1 cut(s) 261
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SaqAI TTAA 3 cut(s) 41, 143, 327
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 5 cut(s) 21, 250, 261, 332, 361
Sau96I GGNCC 1 cut(s) 340
SchI GAGTC 1 cut(s) 236
SetI ASST 3 cut(s) 134, 342, 369
SinI GGWCC 1 cut(s) 340
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 1 cut(s) 140
SspMI CTAG 2 cut(s) 182, 374
StyI CCWWGG 1 cut(s) 123
TaqI TCGA 1 cut(s) 24
TasI AATT 1 cut(s) 140
TatI WGTACW 1 cut(s) 292
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 3 cut(s) 41, 143, 327
Tru9I TTAA 3 cut(s) 41, 143, 327
TscAI CASTG 2 cut(s) 97, 195
TseI GCWGC 1 cut(s) 132
TspRI CASTG 2 cut(s) 97, 195
Vha464I CTTAAG 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 340
XbaI TCTAGA 1 cut(s) 373
XmiI GTMKAC 1 cut(s) 168
XspI CTAG 2 cut(s) 182, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.