Rw2G011530

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
11656732 .. 11659478
2747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G011530.1

Sequence Viewer

Length: 2700 bp
ATGGCCTCAGCTCCAACAGACCTCTTGATTGGCAAAATTGTGAGCATTCTAGAGAGCGAAGCATCCTCCATAGCCGGTGTTCGTGATGAAGTTGATGAGATTAAACTGGAGCTTGAGAGCATGAAGTCTTTCCTAGAGGATACAGATTGGAAGAAAGCAAGTACACAAGGAGAGAAGACGTGGATTGCAAACGTGAGAAACTTGGCCTGCGATGTTGAAGATATCATTGATGAATTCATGTATCGCATGTATGAGAAAGAAAGTGGTGGTCGATTTGCAAGGTTTCTCCAGAAAACCATTCACGTCCCAAAAAACCTCTGGTATAAGCGTCGAATTGCTAACAAGTTACAGAAAATTATTGCAGCAATCAAAGCCATTCCAGAGAGAAAACAGAGGTATGGTCTAATTGGTCAAGAAGGAACATCTTCTGATGATGTTCACAAGAGGGTAAAAATCAAAGCCGAGTCCTCGCTTTTTGAGAAGGAAGATGAACTCGTGGGAATTGAAGGGAAGAAGCAAATGTTAATGGGATGGTTGATCAATGGAGGGAAAAAACAAACTATTGTCTCTGTGGTCGGCATGGGAGGATCAGGGAAGACAACTCTCGTTGCCAACACCTTCACTCAGGAGACAGTAAAGAGACATTTTAATTGTTTTGCATGGATAACTGTTTCCCAAACTTATGTGCTTGAAGACTTATTTAGAAGCTTGATAAAGGAATTCCACCAATCAATAGAACAGGAAGTCCCTGGGAATTTGCATGCAATGAGCTACAGGGAATTGCTGGAGATGTTGACAAACTTTTTGGTGTCCAAAAGATATCTAGTTGTATTGGATGACGTGTGGGATATCACTCTTTGGGAAAATATAAGATTATCATTTCCAGATGAACAGATTGGAAGTCGAATCATTCTTACAACTCGAAGAGAAGACATAGCATCCTATTCTTTTGGAGTTGAAAGTCATGTTTACCCTATTCAACTCTTGCAACGCGATGAGGCCAAGGAGCTCTTCAGCAAGAAAGCATTCCCAACTTATCACAATATATGCCCACCAGAGCTTGAACCATTAGCTTGGGAACTTGTGGAGAAGTGTAACGGCTTACCTCTGGCAATTGTGGCTTTACGTGGCCTCATGTCCTCAAAAAAATCTTCTGTAGAGTGGAGTACAGTCCGCAACAGCTTAAATTGGCATCTAAGTAACAATCCGTTGTTAGAATCTATCAAGATCATCTTGTTGCTTAGTTTCAACGGTTTGTCATATCGATTAAAACGTTGTTTCCTATATTGTTCCTTATTCCCAGAGGATTACTTGATGGGGAAAAATAGACTCATTAGACTGTGGATAGCTGAAGGATTTATTGAACACGTTAAAGGGGTTACACAGAAGCAGTTGCAGAACTCTATATTATGGAACTCGCCAAGGGCATGCAAGATGCATGATCTTATGCGGGAGCTTGCTTTATCAGAATCAGCATCGGAAAACTTTGCCACTGTGTACGATGGCAAAGAAGTAATGAAAGAAATGGGAGCCCGTCGTTTGTCAATTCAAACAACCGATGGGGAAATTAAGCCACTCACAGATATGTCACATCTTCGTTCTTTTCTTGTCTTTGTCACTAATAGAATCTCATCGTCTGTTTCTGAGATATTGCCTTCTGGATTGAAGTTGTTGAGGATTCTAGATTTGGAACGGTCCCCGGTTACTAAATTGCCAGATGAAGTTGTGTACTTATTCAACTTAAGATATTTAAATTTGAGGAAAACTCCCATTAAAGAGCTTCCCAAATCCATAGGACGGCTCCACAATCTCCAGACCTTGGACATAAGGGATTCCAATATAAAGGCACTTCCAAGGGGAATTACCAAGCTGCTTAACCTACGCCATCTGCTTATTTACCGTTACACTGGAGTACATAAGGGCTTCAGATATATTGAAGGGACAAAAGGTCCATCTGGTATTTGTAAGTTGAAGAACTTGCAAGTTTTGGCATGTGTTGAATCAGAAGGAAATGTTATTAGACTTGTCGGGAACATGACCCAACTTACTAAGCTTGGCATCACAAATGTAAAAGAAAGAGACGAGATAGACCTATGTGCTTCAATTCAAAAGATGGAGCTCCTCCAGGACTTGTTTTTAATGGTACCTGATGAAGAGGAATGTCTTCGACTCGATGCGCTAACTGCACCTCCTGCTCACCTTCACAAACTTGCGTTGGCTGGAAAGTTGGAAATGGTACCACGTTGGTTTTCTTCACTTCACAGCCTCACATCTTTGAATCTGCATTGGCCTAGACTCGAGGAAGATTTATTACCTCACATTGAAGCACTGGCCAGCCTACGAAGCCTTACTCTTTATAATGCATACACTGGGAAAAACCTGAGTTTCAGTACAGGCTTCAGAAATCTTGTGCATTTGCAGCTGTGCAATTTCCCTGTACTGAATAACATAAATATAGAGAAAGGGGTGATGCCAAAGCTGCAGTTCTTGATGCTGGATAGCTGTCTGGAAGTAAAGACTTTGCCGTGGGGTATTGAATACCTTTCTAATCTTGAAACCTTGCAGTTGGGATCTGTTTCAGTGCAACTTCTAGAGTCCATACGAGAAGGAGGTGTGGATCATTCAAAGGTAAGACACCTTCCAGAAGTAGATGATTTAGTCAGAACGTTATTTGGGAGGTTTAATGAAAGCAAGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

899

Amino Acids

102.6

Weight (kDa)

8.44

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 9 - 90 1.7e-21 Rx N-terminal domain
NB-ARC PF00931 170 - 345 2.3e-44 NB-ARC domain
WHD_DRP PF23559 432 - 487 1.9e-08 Disease resistance protein Winged helix domain
LRR_14 PF23598 531 - 855 5.4e-44 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2358
Acc65I GGTACC 2 cut(s) 2143, 2236
AccB1I GGYRCC 2 cut(s) 2143, 2236
AccB7I CCANNNNNTGG 1 cut(s) 1819
AccII CGCG 1 cut(s) 993
AciI CCGC 2 cut(s) 1174, 1450
AclI AACGTT 2 cut(s) 1273, 2666
AclWI GGATC 3 cut(s) 595, 2578, 2625
AcoI YGGCCR 1 cut(s) 2331
AcsI RAATTY 4 cut(s) 233, 719, 754, 1753
AcuI CTGAAG 4 cut(s) 997, 1371, 1909, 2383
AfaI GTAC 9 cut(s) 163, 1168, 1499, 1730, 1914, 2145, 2238, 2392, 2439
AfiI CCNNNNNNNGG 2 cut(s) 1797, 1819
AflII CTTAAG 1 cut(s) 1741
AflIII ACRYGT 2 cut(s) 840, 1366
AhdI GACNNNNNGTC 1 cut(s) 1947
AjiI CACGTC 3 cut(s) 180, 304, 841
AjnI CCWGG 2 cut(s) 748, 2124
AjuI GAANNNNNNNTTGG 2 cut(s) 995, 1027
AloI GAACNNNNNNTCC 2 cut(s) 729, 761
Alw21I GWGCWC 2 cut(s) 1011, 2121
Alw26I GTCTC 4 cut(s) 571, 623, 634, 2073
AlwI GGATC 3 cut(s) 595, 2578, 2625
Ama87I CYCGRG 1 cut(s) 2297
AoxI GGCC 6 cut(s) 3, 204, 999, 1129, 2288, 2331
ApeKI GCWGC 4 cut(s) 362, 1870, 2419, 2479
ApoI RAATTY 4 cut(s) 233, 719, 754, 1753
ArsI GACNNNNNNTTYG 2 cut(s) 787, 819
Asp700I GAANNNNTTC 4 cut(s) 128, 424, 1025, 2163
Asp718I GGTACC 2 cut(s) 2143, 2236
AspLEI GCGC 1 cut(s) 2179
AspS9I GGNCC 2 cut(s) 1695, 1949
AsuC2I CCSGG 1 cut(s) 1700
AsuHPI GGTGA 2 cut(s) 2189, 2479
AvaI CYCGRG 1 cut(s) 2297
AvaII GGWCC 2 cut(s) 1695, 1949
BalI TGGCCA 1 cut(s) 2333
BanI GGYRCC 2 cut(s) 2143, 2236
BanII GRGCYC 3 cut(s) 1011, 1534, 2121
BarI GAAGNNNNNNTAC 4 cut(s) 2295, 2327, 2622, 2654
BauI CACGAG 1 cut(s) 494
BbsI GAAGAC 5 cut(s) 182, 602, 699, 936, 2156
Bbv12I GWGCWC 2 cut(s) 1011, 2121
BbvCI CCTCAGC 1 cut(s) 7
BbvI GCAGC 4 cut(s) 374, 1857, 2431, 2466
BccI CCATC 7 cut(s) 525, 1309, 1496, 1553, 1893, 1960, 2107
BceAI ACGGC 3 cut(s) 1114, 1814, 2509
BciT130I CCWGG 2 cut(s) 750, 2126
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 1 cut(s) 537
BcnI CCSGG 1 cut(s) 1700
BcoDI GTCTC 4 cut(s) 571, 623, 634, 2073
BfaI CTAG 7 cut(s) 50, 134, 824, 1682, 2292, 2591, 2698
BfmI CTRYAG 3 cut(s) 772, 1155, 2480
BfrI CTTAAG 1 cut(s) 1741
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 4 cut(s) 363, 1871, 2420, 2480
BlsI GCNGC 4 cut(s) 364, 1872, 2421, 2481
Bme1390I CCNGG 3 cut(s) 750, 1700, 2126
Bme18I GGWCC 2 cut(s) 1695, 1949
BmeRI GACNNNNNGTC 1 cut(s) 1947
BmeT110I CYCGRG 1 cut(s) 2297
BmgBI CACGTC 3 cut(s) 180, 304, 841
BmgT120I GGNCC 2 cut(s) 1695, 1949
BmiI GGNNCC 5 cut(s) 1531, 1697, 1802, 2145, 2238
BmrFI CCNGG 3 cut(s) 750, 1700, 2126
BmrI ACTGGG 1 cut(s) 2379
BmsI GCATC 9 cut(s) 71, 947, 1201, 1425, 1484, 2067, 2164, 2460, 2481
BmuI ACTGGG 1 cut(s) 2379
BpiI GAAGAC 5 cut(s) 182, 602, 699, 936, 2156
BplI GAGNNNNNCTC 2 cut(s) 1750, 1782
BpmI CTGGAG 6 cut(s) 128, 272, 806, 1796, 1929, 2108
Bpu10I CCTNAGC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 1700
Bsa29I ATCGAT 1 cut(s) 1264
BsaAI YACGTR 1 cut(s) 1127
BsaJI CCNNGG 8 cut(s) 748, 749, 1002, 1421, 1698, 1818, 1853, 2525
BsaXI ACNNNNNCTCC 2 cut(s) 2173, 2203
Bsc4I CCNNNNNNNGG 2 cut(s) 1797, 1819
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 4 cut(s) 111, 1912, 2334, 2374
Bse3DI GCAATG 1 cut(s) 771
BseBI CCWGG 2 cut(s) 750, 2126
BseCI ATCGAT 1 cut(s) 1264
BseDI CCNNGG 8 cut(s) 748, 749, 1002, 1421, 1698, 1818, 1853, 2525
BseGI GGATG 4 cut(s) 62, 536, 841, 938
BseLI CCNNNNNNNGG 2 cut(s) 1797, 1819
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 4 cut(s) 21, 638, 1635, 2372
BseNI ACTGG 4 cut(s) 111, 1912, 2334, 2374
BseRI GAGGAG 1 cut(s) 2111
BseXI GCAGC 4 cut(s) 374, 1857, 2431, 2466
BsgI GTGCAG 1 cut(s) 2169
Bsh1236I CGCG 1 cut(s) 993
BshFI GGCC 6 cut(s) 5, 206, 1001, 1131, 2290, 2333
BshNI GGYRCC 2 cut(s) 2143, 2236
BshVI ATCGAT 1 cut(s) 1264
BsiHKAI GWGCWC 2 cut(s) 1011, 2121
BsiHKCI CYCGRG 1 cut(s) 2297
BsiSI CCGG 2 cut(s) 75, 1700
BslFI GGGAC 4 cut(s) 290, 731, 1681, 1954
BslI CCNNNNNNNGG 2 cut(s) 1797, 1819
BsmAI GTCTC 4 cut(s) 571, 623, 634, 2073
BsmBI CGTCTC 1 cut(s) 2073
BsmFI GGGAC 4 cut(s) 290, 731, 1681, 1954
BsmI GAATGC 2 cut(s) 45, 1025
BsnI GGCC 6 cut(s) 5, 206, 1001, 1131, 2290, 2333
BsoBI CYCGRG 1 cut(s) 2297
Bsp1286I GDGCHC 3 cut(s) 1011, 1534, 2121
Bsp143I GATC 6 cut(s) 537, 587, 1227, 1441, 2570, 2617
BspACI CCGC 2 cut(s) 1174, 1450
BspANI GGCC 6 cut(s) 5, 206, 1001, 1131, 2290, 2333
BspCNI CTCAG 4 cut(s) 20, 637, 1636, 2373
BspDI ATCGAT 1 cut(s) 1264
BspFNI CGCG 1 cut(s) 993
BspLI GGNNCC 5 cut(s) 1531, 1697, 1802, 2145, 2238
BspMAI CTGCAG 1 cut(s) 2484
BspPI GGATC 3 cut(s) 595, 2578, 2625
BspQI GCTCTTC 1 cut(s) 1016
BspT107I GGYRCC 2 cut(s) 2143, 2236
BspTI CTTAAG 1 cut(s) 1741
BsrDI GCAATG 1 cut(s) 771
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 4 cut(s) 111, 1912, 2334, 2374
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 8 cut(s) 748, 749, 1002, 1421, 1698, 1818, 1853, 2525
BssMI GATC 6 cut(s) 537, 587, 1227, 1441, 2570, 2617
BssSI CACGAG 1 cut(s) 494
BssT1I CCWWGG 4 cut(s) 1002, 1421, 1818, 1853
Bst2BI CACGAG 1 cut(s) 494
Bst2UI CCWGG 2 cut(s) 750, 2126
Bst4CI ACNGT 8 cut(s) 634, 670, 1171, 1253, 1341, 1495, 1695, 1901
Bst6I CTCTTC 3 cut(s) 919, 1016, 2148
BstAFI CTTAAG 1 cut(s) 1741
BstAPI GCANNNNNTGC 1 cut(s) 2192
BstBAI YACGTR 1 cut(s) 1127
BstC8I GCNNGC 5 cut(s) 208, 762, 1429, 1458, 2335
BstDEI CTNAG 7 cut(s) 7, 624, 1196, 1241, 1644, 2049, 2381
BstDSI CCRYGG 1 cut(s) 2525
BstF5I GGATG 4 cut(s) 62, 536, 841, 938
BstFNI CGCG 1 cut(s) 993
BstHHI GCGC 1 cut(s) 2179
BstKTI GATC 6 cut(s) 540, 590, 1230, 1444, 2573, 2620
BstMAI GTCTC 4 cut(s) 571, 623, 634, 2073
BstMBI GATC 6 cut(s) 537, 587, 1227, 1441, 2570, 2617
BstMWI GCNNNNNNNGC 7 cut(s) 371, 1118, 2183, 2192, 2343, 2419, 2479
BstNI CCWGG 2 cut(s) 750, 2126
BstNSI RCATGY 4 cut(s) 250, 764, 1431, 1995
BstSCI CCNGG 3 cut(s) 748, 1698, 2124
BstSFI CTRYAG 3 cut(s) 772, 1155, 2480
BstUI CGCG 1 cut(s) 993
BstV1I GCAGC 4 cut(s) 374, 1857, 2431, 2466
BstV2I GAAGAC 5 cut(s) 182, 602, 699, 936, 2156
BstX2I RGATCY 1 cut(s) 2570
BstXI CCANNNNNNTGG 1 cut(s) 1074
BstYI RGATCY 1 cut(s) 2570
Bsu15I ATCGAT 1 cut(s) 1264
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 6 cut(s) 5, 206, 1001, 1131, 2290, 2333
BsuTUI ATCGAT 1 cut(s) 1264
BtgI CCRYGG 1 cut(s) 2525
BtgZI GCGATG 2 cut(s) 225, 1008
BtrI CACGTC 3 cut(s) 180, 304, 841
BtsCI GGATG 4 cut(s) 62, 536, 841, 938
BtsIMutI CAGTG 5 cut(s) 1491, 1905, 2327, 2367, 2586
Cac8I GCNNGC 5 cut(s) 208, 762, 1429, 1458, 2335
CfoI GCGC 1 cut(s) 2179
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 1695, 1949
ClaI ATCGAT 1 cut(s) 1264
CseI GACGC 1 cut(s) 317
Csp6I GTAC 9 cut(s) 162, 1167, 1498, 1729, 1913, 2144, 2237, 2391, 2438
CviQI GTAC 9 cut(s) 162, 1167, 1498, 1729, 1913, 2144, 2237, 2391, 2438
DdeI CTNAG 7 cut(s) 7, 624, 1196, 1241, 1644, 2049, 2381
DpnI GATC 6 cut(s) 539, 589, 1229, 1443, 2572, 2619
DpnII GATC 6 cut(s) 537, 587, 1227, 1441, 2570, 2617
DraI TTTAAA 1 cut(s) 1752
DriI GACNNNNNGTC 1 cut(s) 1947
EaeI YGGCCR 1 cut(s) 2331
Eam1104I CTCTTC 3 cut(s) 919, 1016, 2148
Eam1105I GACNNNNNGTC 1 cut(s) 1947
EarI CTCTTC 3 cut(s) 919, 1016, 2148
Ecl136II GAGCTC 2 cut(s) 1009, 2119
Eco130I CCWWGG 4 cut(s) 1002, 1421, 1818, 1853
Eco24I GRGCYC 3 cut(s) 1011, 1534, 2121
Eco32I GATATC 3 cut(s) 223, 821, 850
Eco47I GGWCC 2 cut(s) 1695, 1949
Eco53kI GAGCTC 2 cut(s) 1009, 2119
Eco57I CTGAAG 4 cut(s) 997, 1371, 1909, 2383
Eco88I CYCGRG 1 cut(s) 2297
EcoICRI GAGCTC 2 cut(s) 1009, 2119
EcoRI GAATTC 2 cut(s) 233, 719
EcoRII CCWGG 2 cut(s) 748, 2124
EcoRV GATATC 3 cut(s) 223, 821, 850
EcoT14I CCWWGG 4 cut(s) 1002, 1421, 1818, 1853
EcoT22I ATGCAT 2 cut(s) 1440, 2365
EcoT38I GRGCYC 3 cut(s) 1011, 1534, 2121
ErhI CCWWGG 4 cut(s) 1002, 1421, 1818, 1853
Esp3I CGTCTC 1 cut(s) 2073
FalI AAGNNNNNCTT 4 cut(s) 995, 1027, 1217, 1249
FaqI GGGAC 4 cut(s) 290, 731, 1681, 1954
FauI CCCGC 1 cut(s) 1443
FbaI TGATCA 1 cut(s) 537
Fnu4HI GCNGC 4 cut(s) 363, 1871, 2420, 2480
FokI GGATG 4 cut(s) 49, 543, 848, 925
FriOI GRGCYC 3 cut(s) 1011, 1534, 2121
Fsp4HI GCNGC 4 cut(s) 363, 1871, 2420, 2480
FspBI CTAG 7 cut(s) 50, 134, 824, 1682, 2292, 2591, 2698
GlaI GCGC 1 cut(s) 2178
GluI GCNGC 4 cut(s) 363, 1871, 2420, 2480
GsuI CTGGAG 6 cut(s) 128, 272, 806, 1796, 1929, 2108
HaeIII GGCC 6 cut(s) 5, 206, 1001, 1131, 2290, 2333
HapII CCGG 2 cut(s) 75, 1700
HgaI GACGC 1 cut(s) 317
HhaI GCGC 1 cut(s) 2179
Hin6I GCGC 1 cut(s) 2177
HinP1I GCGC 1 cut(s) 2177
HincII GTYRAC 1 cut(s) 795
HindII GTYRAC 1 cut(s) 795
HindIII AAGCTT 2 cut(s) 706, 2051
HpaII CCGG 2 cut(s) 75, 1700
HphI GGTGA 2 cut(s) 2189, 2479
Hpy166II GTNNAC 6 cut(s) 164, 439, 795, 970, 1498, 1729
Hpy188I TCNGA 8 cut(s) 430, 1468, 1480, 1645, 1928, 2005, 2402, 2663
Hpy8I GTNNAC 6 cut(s) 164, 439, 795, 970, 1498, 1729
Hpy99I CGWCG 2 cut(s) 333, 1539
HpyCH4III ACNGT 8 cut(s) 634, 670, 1171, 1253, 1341, 1495, 1695, 1901
HpyCH4IV ACGT 9 cut(s) 179, 192, 303, 840, 1126, 1273, 1368, 2242, 2666
HpyF10VI GCNNNNNNNGC 7 cut(s) 371, 1118, 2183, 2192, 2343, 2419, 2479
HpyF3I CTNAG 7 cut(s) 7, 624, 1196, 1241, 1644, 2049, 2381
HpySE526I ACGT 9 cut(s) 179, 192, 303, 840, 1126, 1273, 1368, 2242, 2666
HspAI GCGC 1 cut(s) 2177
KpnI GGTACC 2 cut(s) 2147, 2240
Ksp22I TGATCA 1 cut(s) 537
Kzo9I GATC 6 cut(s) 537, 587, 1227, 1441, 2570, 2617
LguI GCTCTTC 1 cut(s) 1016
LmnI GCTCC 8 cut(s) 16, 109, 1006, 1453, 1529, 1806, 2116, 2124
Lsp1109I GCAGC 4 cut(s) 374, 1857, 2431, 2466
LweI GCATC 9 cut(s) 71, 947, 1201, 1425, 1484, 2067, 2164, 2460, 2481
MaeI CTAG 7 cut(s) 50, 134, 824, 1682, 2292, 2591, 2698
MaeII ACGT 9 cut(s) 179, 192, 303, 840, 1126, 1273, 1368, 2242, 2666
MaeIII GTNAC 8 cut(s) 345, 1094, 1199, 1378, 1587, 1615, 1702, 1901
MalI GATC 6 cut(s) 539, 589, 1229, 1443, 2572, 2619
MboI GATC 6 cut(s) 537, 587, 1227, 1441, 2570, 2617
MfeI CAATTG 1 cut(s) 1113
MflI RGATCY 1 cut(s) 2570
MhlI GDGCHC 3 cut(s) 1011, 1534, 2121
MlsI TGGCCA 1 cut(s) 2333
MluNI TGGCCA 1 cut(s) 2333
MlyI GAGTC 5 cut(s) 473, 1323, 2163, 2289, 2603
MmeI TCCRAC 2 cut(s) 38, 2208
Mox20I TGGCCA 1 cut(s) 2333
Mph1103I ATGCAT 2 cut(s) 1440, 2365
MroXI GAANNNNTTC 4 cut(s) 128, 424, 1025, 2163
MscI TGGCCA 1 cut(s) 2333
MslI CAYNNNNRTG 1 cut(s) 1583
Msp20I TGGCCA 1 cut(s) 2333
MspA1I CMGCKG 1 cut(s) 2422
MspCI CTTAAG 1 cut(s) 1741
MspI CCGG 2 cut(s) 75, 1700
MspR9I CCNGG 3 cut(s) 750, 1700, 2126
MunI CAATTG 1 cut(s) 1113
Mva1269I GAATGC 2 cut(s) 45, 1025
MvaI CCWGG 2 cut(s) 750, 2126
MvnI CGCG 1 cut(s) 993
MwoI GCNNNNNNNGC 7 cut(s) 371, 1118, 2183, 2192, 2343, 2419, 2479
NciI CCSGG 1 cut(s) 1700
NdeII GATC 6 cut(s) 537, 587, 1227, 1441, 2570, 2617
NlaIV GGNNCC 5 cut(s) 1531, 1697, 1802, 2145, 2238
NmeAIII GCCGAG 1 cut(s) 487
NmuCI GTSAC 2 cut(s) 1587, 1615
NsiI ATGCAT 2 cut(s) 1440, 2365
NspI RCATGY 4 cut(s) 250, 764, 1431, 1995
PaeI GCATGC 2 cut(s) 764, 1431
PaeR7I CTCGAG 1 cut(s) 2297
PasI CCCWGGG 1 cut(s) 749
PciSI GCTCTTC 1 cut(s) 1016
PcsI WCGNNNNNNNCGW 1 cut(s) 1270
PctI GAATGC 2 cut(s) 45, 1025
PdmI GAANNNNTTC 4 cut(s) 128, 424, 1025, 2163
PfeI GAWTC 8 cut(s) 906, 1217, 1469, 1626, 1678, 1832, 2000, 2278
PflMI CCANNNNNTGG 1 cut(s) 1819
PfoI TCCNGGA 1 cut(s) 2124
PkrI GCNGC 4 cut(s) 364, 1872, 2421, 2481
PleI GAGTC 5 cut(s) 472, 1323, 2163, 2289, 2602
PpsI GAGTC 5 cut(s) 472, 1323, 2163, 2289, 2602
Ppu21I YACGTR 1 cut(s) 1127
PsiI TTATAA 1 cut(s) 2358
Psp124BI GAGCTC 2 cut(s) 1011, 2121
Psp1406I AACGTT 2 cut(s) 1273, 2666
Psp6I CCWGG 2 cut(s) 748, 2124
PspGI CCWGG 2 cut(s) 748, 2124
PspN4I GGNNCC 5 cut(s) 1531, 1697, 1802, 2145, 2238
PspPI GGNCC 2 cut(s) 1695, 1949
PspXI VCTCGAGB 1 cut(s) 2297
PstI CTGCAG 1 cut(s) 2484
PsuI RGATCY 1 cut(s) 2570
PvuII CAGCTG 1 cut(s) 2422
RsaI GTAC 9 cut(s) 163, 1168, 1499, 1730, 1914, 2145, 2238, 2392, 2439
RsaNI GTAC 9 cut(s) 162, 1167, 1498, 1729, 1913, 2144, 2237, 2391, 2438
RseI CAYNNNNRTG 1 cut(s) 1583
SacI GAGCTC 2 cut(s) 1011, 2121
SapI GCTCTTC 1 cut(s) 1016
SatI GCNGC 4 cut(s) 363, 1871, 2420, 2480
Sau3AI GATC 6 cut(s) 537, 587, 1227, 1441, 2570, 2617
Sau96I GGNCC 2 cut(s) 1695, 1949
SchI GAGTC 5 cut(s) 473, 1323, 2163, 2289, 2603
ScrFI CCNGG 3 cut(s) 750, 1700, 2126
SduI GDGCHC 3 cut(s) 1011, 1534, 2121
SfaNI GCATC 9 cut(s) 71, 947, 1201, 1425, 1484, 2067, 2164, 2460, 2481
SfcI CTRYAG 3 cut(s) 772, 1155, 2480
Sfr274I CTCGAG 1 cut(s) 2297
SinI GGWCC 2 cut(s) 1695, 1949
SlaI CTCGAG 1 cut(s) 2297
SmiI ATTTAAAT 1 cut(s) 1752
SmiMI CAYNNNNRTG 1 cut(s) 1583
SmlI CTYRAG 3 cut(s) 113, 1741, 2297
SmoI CTYRAG 3 cut(s) 113, 1741, 2297
SphI GCATGC 2 cut(s) 764, 1431
SsiI CCGC 2 cut(s) 1174, 1450
SspMI CTAG 7 cut(s) 50, 134, 824, 1682, 2292, 2591, 2698
SstI GAGCTC 2 cut(s) 1011, 2121
StyD4I CCNGG 3 cut(s) 748, 1698, 2124
StyI CCWWGG 4 cut(s) 1002, 1421, 1818, 1853
SwaI ATTTAAAT 1 cut(s) 1752
TaaI ACNGT 8 cut(s) 634, 670, 1171, 1253, 1341, 1495, 1695, 1901
TaiI ACGT 9 cut(s) 182, 195, 306, 843, 1129, 1276, 1371, 2245, 2669
TaqI TCGA 8 cut(s) 271, 331, 904, 922, 1264, 2167, 2172, 2298
TatI WGTACW 6 cut(s) 161, 1166, 1728, 1912, 2390, 2437
TfiI GAWTC 8 cut(s) 906, 1217, 1469, 1626, 1678, 1832, 2000, 2278
TscAI CASTG 5 cut(s) 1498, 1912, 2334, 2374, 2586
TseFI GTSAC 2 cut(s) 1587, 1615
TseI GCWGC 4 cut(s) 362, 1870, 2419, 2479
Tsp45I GTSAC 2 cut(s) 1587, 1615
TspGWI ACGGA 1 cut(s) 1197
TspRI CASTG 5 cut(s) 1498, 1912, 2334, 2374, 2586
Van91I CCANNNNNTGG 1 cut(s) 1819
Vha464I CTTAAG 1 cut(s) 1741
VpaK11BI GGWCC 2 cut(s) 1695, 1949
XapI RAATTY 4 cut(s) 233, 719, 754, 1753
XbaI TCTAGA 3 cut(s) 49, 1681, 2590
XceI RCATGY 4 cut(s) 250, 764, 1431, 1995
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
XhoI CTCGAG 1 cut(s) 2297
XmnI GAANNNNTTC 4 cut(s) 128, 424, 1025, 2163
XspI CTAG 7 cut(s) 50, 134, 824, 1682, 2292, 2591, 2698
Zsp2I ATGCAT 2 cut(s) 1440, 2365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.