MD05G1025200.v1.1

disease resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
4111010 .. 4114679
3670 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1025200.v1.1.491

Sequence Viewer

Length: 2508 bp
ATGGACGAGTTCATGTATCACACAAACAAGCAGAGAAGTTGGGGTCCGTACACAAGAGCCTTTCGTCAAGCCACTTGCTTCCCCAAATATCTTTGGGAGAGGCATTGGATTGCCACCAAATTGCAGAAGCTCATCAAAACAATCAAAGGCATTCCAGAAAGAAGCCGGCGCTATGGTGTAGAGCGAATAGAAGGCACGAAGACTAATCCCAACAGTTACGATTCCAACCGAGTCAAAATATATGGTGTGTCATCTCTTTTCTTTAAAGATGACGAACTTGTGGGGATCAAAGATGCTAAAGAGAAGCTTGTTGGATGGTTACTGTCTAAAGAGCCTCAGAGGACTGTAATTTCAGTTGTTGGTATGGGGGGTTCGGGTAAGACGAGCTTGGTTGCGACCGCCTTCACCGGTCAAACTGCCAATTTTCATTGCTACGCATGGCTCACGGTCTCGAAAACTTACAACATTGAAGATCTATTAAGAGTCTTGATAAAAGAACTTTTTAGATCAGCACTGCGAGATGTTCCTCAAGACTTGAGCAACATGAACTACATACAAATGGTAGAATTGTTGGTAAACTATTTGCAGTCAAAGAGGTATGTAATTGTGTTAGATGATGTTTGGGATATATATCTCTGGAGGCAAATAAGTGTAGCACTTCCAGATGGAGTAGACGGAAGTAGAGTCATGCTCACAACTCGAAATGAAGACATTGCTTCTTTTCCATTTGAAGCTGGAAGTCATGTTTACCATGTTCAGCCTCTTAATGAGAATGATGCTTGGGATCTTTTTTCCAAGAAAACTTTCTCTAGCTGGCCTGAGAAGTGTTGCCCACAGGAGCTTGGGTTCATTGCTAGAGATCTTGTTGGAAAATGCAAAGGCTTACCTCTTGGAATTGTGGCTTTGGGTGCTCTCATGTCAACCAGGAGATTGGTTTCTGAATGGATGAAATTTTACAGTAGTTTGAATTGGGAGCTAAGTAACAACCCGACACTTGAAGTAGTGAAGAGCATCTTCTTGCTAAGCTTCAACGATTTACCTTACCGACTTAAGCATTGCTTCTTATATTTGTGTATTTTTCCAGAAGATTATGTGATAGACAGTGATAGGCTTGTCAGACTGTGGATGGCTGAGGGATTTGTGGACAAAGTGGAAGGGCCTAAGCCAGAAGAGATCGCTGAAAGCTACGTAGCGGAGCTCACTTGCCGATGCATGGTACAAGTTGTTAAGAGGCAACCATCTGGAAAAGCAAAAACGTTCAAGATGCATGACCTTATACGCGAACTTGCTCTTTCAATTTCCAAAGCTGACAAATTTTTTGCCGTTTATGATGAGCAAAAAATGAATAAAGATAGCAGAGGTCATCGTCGTATGTCCATGCAAACTAACCATGAAGAACTACAAACACACGGAGACATGTCAAAGCTCCCTGGTGAAATAGTAAAGTTTTTTAACTTGAAGTATTTAAACTTGAAAGGAACAAAAGTAAAAGAGCTTCCAAAAGATATAGGAAACCTTCGTAGTTTGGAAACCTTAGACATTAGGCATTCCAAAATTAGGGTACTTCCAGCTGGAATTGTGAAGTTAAAAAACTTACGGCACCTGTTGATGTACCATTGCAATTTTGAAGATCTTTTTAAGTCTTATTATTTCTTTGATGGCACACAAGCACCAGATGGCATTTGTAAGCTAAAGAGCTTACAAGTTTGTGATGCTATCAAGTTAGGAGGATCGTTAGTCAAACAACTTCGACAGTTGACCCAACTCACAAGAATGAGCTTAAGCAATGCGAGAGAGGCAGATGAGGAGGACTTGTGCAAGTCACTCGAAAGCATGAAACTCATTGAACACTTCTTTGTCCATACAAGTAATGAGGATGAGGTGTTACGATTGGATGCATTGCCATCTGCACCTCCTTTGCTCAAGGAACTTGGTCTGATTGGAAAATTAGAGAAGGTTCCACTTTGGTTTCCTTCTCTTTTCAGCCTTACACACTTGAGGTTGCATTGGTCCAGATTAACAGAAGATTTTCTTCCTTACATCCAAGCACTTCCTAATTTGAGCATACTTCGGCTAAACAATGCATATGTTGGAAATCAATTGGTCTTTCACACTGGATTCCGAATGCTTTCTGAATTGTACATAATGGAGTTGCCTAAAATGAATGCGATCGTCATAGAGAAGGGGGCAATGCCGGCATTACAGACACTTGTTATCACTGAATGCATGGGGTTAAAGCAATTGCCTAATGGAATTGAACACCTAACATGTCTCCAAACTTTGGATTTGGTAAATGTTCCCAATGAACTCGTAGAGAGAATTCGTGGAGAAGGAAGCTTGGATAGTTCCAAGGTTATGCACATCTCAGAACTAAGCTATCACTACAAAACTGAATCGGGGTGGTTTGGGGAAAGGTTGCGATCCTGCCTACAATGGATCTTTCGACCATCATCTTCTACCGTCGATATTCTATCCCGGGATGGTCTACCCTTCTTACCAGGGAACTGA

Protein Analysis

836

Amino Acids

95.97

Weight (kDa)

8.67

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 97 - 270 1.6e-42 NB-ARC domain
WHD_DRP PF23559 359 - 430 1.7e-23 Disease resistance protein Winged helix domain
LRR_14 PF23598 479 - 740 5.5e-42 Leucine-rich repeat region
LRR_8 PF13855 485 - 541 2.2e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1599
AccB7I CCANNNNNTGG 1 cut(s) 2281
AccI GTMKAC 2 cut(s) 672, 2485
AccII CGCG 1 cut(s) 1281
AciI CCGC 2 cut(s) 399, 1193
AclI AACGTT 1 cut(s) 1256
AclWI GGATC 5 cut(s) 293, 792, 1738, 2415, 2444
AcsI RAATTY 3 cut(s) 950, 1313, 2319
AfaI GTAC 5 cut(s) 50, 1218, 1563, 1613, 2141
AfiI CCNNNNNNNGG 3 cut(s) 1213, 1557, 2281
AflII CTTAAG 2 cut(s) 1049, 1780
AflIII ACRYGT 2 cut(s) 1416, 2267
AgeI ACCGGT 1 cut(s) 407
AjnI CCWGG 3 cut(s) 923, 1429, 2497
AjuI GAANNNNNNNTTGG 2 cut(s) 788, 820
AloI GAACNNNNNNTCC 2 cut(s) 830, 862
Alw21I GWGCWC 2 cut(s) 913, 1200
Alw26I GTCTC 3 cut(s) 454, 1407, 2276
AlwI GGATC 5 cut(s) 293, 792, 1738, 2415, 2444
Ama87I CYCGRG 1 cut(s) 2475
AoxI GGCC 2 cut(s) 815, 1157
ApoI RAATTY 3 cut(s) 950, 1313, 2319
ArsI GACNNNNNNTTYG 2 cut(s) 1301, 1333
AsiGI ACCGGT 1 cut(s) 407
Asp700I GAANNNNTTC 3 cut(s) 803, 2028, 2128
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 3 cut(s) 44, 1157, 2010
AsuC2I CCSGG 2 cut(s) 2476, 2477
AsuHPI GGTGA 2 cut(s) 397, 1445
AvaI CYCGRG 1 cut(s) 2475
AvaII GGWCC 2 cut(s) 44, 2010
BanI GGYRCC 1 cut(s) 1599
BanII GRGCYC 1 cut(s) 1200
BarI GAAGNNNNNNTAC 2 cut(s) 1479, 1511
BbsI GAAGAC 2 cut(s) 206, 714
Bbv12I GWGCWC 2 cut(s) 913, 1200
BbvCI CCTCAGC 1 cut(s) 1131
BccI CCATC 9 cut(s) 309, 659, 1120, 1246, 1652, 1670, 1912, 2455, 2474
BceAI ACGGC 2 cut(s) 1307, 1613
BcgI CGANNNNNNTGC 2 cut(s) 1807, 1841
BciT130I CCWGG 3 cut(s) 925, 1431, 2499
BcnI CCSGG 2 cut(s) 2476, 2477
BcoDI GTCTC 3 cut(s) 454, 1407, 2276
BfaI CTAG 2 cut(s) 810, 855
BfoI RGCGCY 1 cut(s) 172
BfrI CTTAAG 2 cut(s) 1049, 1780
BglII AGATCT 3 cut(s) 472, 859, 1630
BlpI GCTNAGC 1 cut(s) 1022
Bme1390I CCNGG 5 cut(s) 925, 1431, 2476, 2477, 2499
Bme18I GGWCC 2 cut(s) 44, 2010
BmeT110I CYCGRG 1 cut(s) 2475
BmgT120I GGNCC 3 cut(s) 44, 1157, 2010
BmiI GGNNCC 3 cut(s) 45, 1601, 1959
BmrFI CCNGG 5 cut(s) 925, 1431, 2476, 2477, 2499
BmsI GCATC 7 cut(s) 283, 766, 1020, 1199, 1254, 1702, 1885
BpiI GAAGAC 2 cut(s) 206, 714
BplI GAGNNNNNCTC 2 cut(s) 675, 707
BpmI CTGGAG 1 cut(s) 658
Bpu10I CCTNAGC 2 cut(s) 1131, 1161
Bpu1102I GCTNAGC 1 cut(s) 1022
BpuEI CTTGAG 4 cut(s) 513, 556, 1907, 2017
BpuMI CCSGG 2 cut(s) 2476, 2477
BsaAI YACGTR 1 cut(s) 1189
BsaBI GATNNNNATC 1 cut(s) 630
BsaI GGTCTC 1 cut(s) 454
BsaJI CCNNGG 4 cut(s) 1429, 2349, 2475, 2498
BsaWI WCCGGW 1 cut(s) 407
BsaXI ACNNNNNCTCC 4 cut(s) 830, 860, 1799, 1829
Bsc4I CCNNNNNNNGG 3 cut(s) 1213, 1557, 2281
Bse118I RCCGGY 3 cut(s) 165, 407, 2194
Bse1I ACTGG 1 cut(s) 2119
Bse3DI GCAATG 8 cut(s) 427, 711, 849, 1054, 1615, 1792, 1898, 2196
Bse8I GATNNNNATC 1 cut(s) 630
BseBI CCWGG 3 cut(s) 925, 1431, 2499
BseDI CCNNGG 4 cut(s) 1429, 2349, 2475, 2498
BseGI GGATG 7 cut(s) 320, 951, 1131, 1882, 1900, 2040, 2485
BseJI GATNNNNATC 1 cut(s) 630
BseLI CCNNNNNNNGG 3 cut(s) 1213, 1557, 2281
BseMI GCAATG 8 cut(s) 427, 711, 849, 1054, 1615, 1792, 1898, 2196
BseMII CTCAG 4 cut(s) 350, 810, 1122, 2379
BseNI ACTGG 1 cut(s) 2119
BseRI GAGGAG 1 cut(s) 1820
BsgI GTGCAG 1 cut(s) 1893
Bsh1236I CGCG 1 cut(s) 1281
Bsh1285I CGRYCG 2 cut(s) 399, 2172
BshFI GGCC 2 cut(s) 817, 1159
BshNI GGYRCC 1 cut(s) 1599
BshTI ACCGGT 1 cut(s) 407
BsiEI CGRYCG 2 cut(s) 399, 2172
BsiHKAI GWGCWC 2 cut(s) 913, 1200
BsiHKCI CYCGRG 1 cut(s) 2475
BsiSI CCGG 4 cut(s) 166, 408, 2195, 2476
BslI CCNNNNNNNGG 3 cut(s) 1213, 1557, 2281
BsmAI GTCTC 3 cut(s) 454, 1407, 2276
BsmI GAATGC 5 cut(s) 150, 1546, 2130, 2170, 2228
BsnI GGCC 2 cut(s) 817, 1159
Bso31I GGTCTC 1 cut(s) 454
BsoBI CYCGRG 1 cut(s) 2475
Bsp1286I GDGCHC 2 cut(s) 913, 1200
Bsp1407I TGTACA 1 cut(s) 2139
Bsp1720I GCTNAGC 1 cut(s) 1022
BspACI CCGC 2 cut(s) 399, 1193
BspANI GGCC 2 cut(s) 817, 1159
BspCNI CTCAG 4 cut(s) 349, 811, 1123, 2378
BspFNI CGCG 1 cut(s) 1281
BspLI GGNNCC 3 cut(s) 45, 1601, 1959
BspPI GGATC 5 cut(s) 293, 792, 1738, 2415, 2444
BspQI GCTCTTC 1 cut(s) 1001
BspT107I GGYRCC 1 cut(s) 1599
BspTI CTTAAG 2 cut(s) 1049, 1780
BspTNI GGTCTC 1 cut(s) 454
BsrDI GCAATG 8 cut(s) 427, 711, 849, 1054, 1615, 1792, 1898, 2196
BsrFI RCCGGY 3 cut(s) 165, 407, 2194
BsrGI TGTACA 1 cut(s) 2139
BsrI ACTGG 1 cut(s) 2119
BssAI RCCGGY 3 cut(s) 165, 407, 2194
BssECI CCNNGG 4 cut(s) 1429, 2349, 2475, 2498
BssT1I CCWWGG 1 cut(s) 2349
Bst2UI CCWGG 3 cut(s) 925, 1431, 2499
Bst4CI ACNGT 9 cut(s) 215, 324, 346, 448, 959, 1103, 1122, 1755, 2461
Bst6I CTCTTC 2 cut(s) 1001, 1164
BstAFI CTTAAG 2 cut(s) 1049, 1780
BstAUI TGTACA 1 cut(s) 2139
BstBAI YACGTR 1 cut(s) 1189
BstC8I GCNNGC 3 cut(s) 167, 815, 2196
BstDEI CTNAG 9 cut(s) 336, 819, 977, 1022, 1131, 1161, 1534, 2365, 2372
BstF5I GGATG 7 cut(s) 320, 951, 1131, 1882, 1900, 2040, 2485
BstFNI CGCG 1 cut(s) 1281
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 1 cut(s) 171
BstMAI GTCTC 3 cut(s) 454, 1407, 2276
BstMCI CGRYCG 2 cut(s) 399, 2172
BstMWI GCNNNNNNNGC 3 cut(s) 908, 1796, 2195
BstNI CCWGG 3 cut(s) 925, 1431, 2499
BstNSI RCATGY 2 cut(s) 1420, 2271
BstSCI CCNGG 5 cut(s) 923, 1429, 2474, 2475, 2497
BstSNI TACGTA 1 cut(s) 1189
BstUI CGCG 1 cut(s) 1281
BstV2I GAAGAC 2 cut(s) 206, 714
BstX2I RGATCY 5 cut(s) 472, 784, 859, 1630, 2436
BstXI CCANNNNNNTGG 1 cut(s) 931
BstYI RGATCY 5 cut(s) 472, 784, 859, 1630, 2436
BsuRI GGCC 2 cut(s) 817, 1159
BtsCI GGATG 7 cut(s) 320, 951, 1131, 1882, 1900, 2040, 2485
BtsI GCAGTG 1 cut(s) 512
BtsIMutI CAGTG 4 cut(s) 512, 1108, 2112, 2217
Cac8I GCNNGC 3 cut(s) 167, 815, 2196
CfoI GCGC 1 cut(s) 171
Cfr10I RCCGGY 3 cut(s) 165, 407, 2194
Cfr13I GGNCC 3 cut(s) 44, 1157, 2010
Cfr9I CCCGGG 1 cut(s) 2475
Csp6I GTAC 5 cut(s) 49, 1217, 1562, 1612, 2140
CspAI ACCGGT 1 cut(s) 407
CviQI GTAC 5 cut(s) 49, 1217, 1562, 1612, 2140
DdeI CTNAG 9 cut(s) 336, 819, 977, 1022, 1131, 1161, 1534, 2365, 2372
DraI TTTAAA 2 cut(s) 265, 1467
Eam1104I CTCTTC 2 cut(s) 1001, 1164
EarI CTCTTC 2 cut(s) 1001, 1164
Ecl136II GAGCTC 1 cut(s) 1198
Eco105I TACGTA 1 cut(s) 1189
Eco130I CCWWGG 1 cut(s) 2349
Eco24I GRGCYC 1 cut(s) 1200
Eco31I GGTCTC 1 cut(s) 454
Eco47I GGWCC 2 cut(s) 44, 2010
Eco53kI GAGCTC 1 cut(s) 1198
Eco88I CYCGRG 1 cut(s) 2475
EcoICRI GAGCTC 1 cut(s) 1198
EcoO109I RGGNCCY 1 cut(s) 1157
EcoRI GAATTC 1 cut(s) 2319
EcoRII CCWGG 3 cut(s) 923, 1429, 2497
EcoT14I CCWWGG 1 cut(s) 2349
EcoT22I ATGCAT 5 cut(s) 1214, 1269, 1900, 2086, 2228
EcoT38I GRGCYC 1 cut(s) 1200
ErhI CCWWGG 1 cut(s) 2349
FauNDI CATATG 1 cut(s) 2086
FblI GTMKAC 2 cut(s) 672, 2485
FokI GGATG 7 cut(s) 327, 958, 1138, 1889, 1907, 2027, 2492
FriOI GRGCYC 1 cut(s) 1200
FspBI CTAG 2 cut(s) 810, 855
GlaI GCGC 1 cut(s) 170
GsuI CTGGAG 1 cut(s) 658
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 2 cut(s) 817, 1159
HapII CCGG 4 cut(s) 166, 408, 2195, 2476
HhaI GCGC 1 cut(s) 171
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 2 cut(s) 921, 1758
HindII GTYRAC 2 cut(s) 921, 1758
HindIII AAGCTT 3 cut(s) 305, 1024, 2335
HinfI GANTC 6 cut(s) 221, 231, 483, 684, 2118, 2393
HpaII CCGG 4 cut(s) 166, 408, 2195, 2476
HphI GGTGA 2 cut(s) 397, 1445
Hpy166II GTNNAC 8 cut(s) 51, 577, 673, 748, 921, 1144, 1758, 2486
Hpy188I TCNGA 7 cut(s) 339, 940, 1118, 1938, 2123, 2134, 2368
Hpy8I GTNNAC 8 cut(s) 51, 577, 673, 748, 921, 1144, 1758, 2486
Hpy99I CGWCG 2 cut(s) 1371, 2465
HpyAV CCTTC 9 cut(s) 185, 412, 1148, 1526, 1948, 1983, 2176, 2324, 2500
HpyCH4III ACNGT 9 cut(s) 215, 324, 346, 448, 959, 1103, 1122, 1755, 2461
HpyCH4IV ACGT 2 cut(s) 1188, 1256
HpyF10VI GCNNNNNNNGC 3 cut(s) 908, 1796, 2195
HpyF3I CTNAG 9 cut(s) 336, 819, 977, 1022, 1131, 1161, 1534, 2365, 2372
HpySE526I ACGT 2 cut(s) 1188, 1256
HspAI GCGC 1 cut(s) 169
KroI GCCGGC 2 cut(s) 165, 2194
KroNI GCCGGC 2 cut(s) 167, 2196
LguI GCTCTTC 1 cut(s) 1001
LmnI GCTCC 4 cut(s) 838, 973, 1195, 1431
LweI GCATC 7 cut(s) 283, 766, 1020, 1199, 1254, 1702, 1885
MaeI CTAG 2 cut(s) 810, 855
MaeII ACGT 2 cut(s) 1188, 1256
MaeIII GTNAC 5 cut(s) 215, 318, 980, 1821, 1884
MfeI CAATTG 2 cut(s) 2099, 2240
MflI RGATCY 5 cut(s) 472, 784, 859, 1630, 2436
MhlI GDGCHC 2 cut(s) 913, 1200
MlyI GAGTC 3 cut(s) 240, 492, 693
MmeI TCCRAC 4 cut(s) 249, 292, 847, 2071
Mph1103I ATGCAT 5 cut(s) 1214, 1269, 1900, 2086, 2228
MroNI GCCGGC 2 cut(s) 165, 2194
MroXI GAANNNNTTC 3 cut(s) 803, 2028, 2128
MslI CAYNNNNRTG 2 cut(s) 557, 1772
MspA1I CMGCKG 1 cut(s) 1571
MspCI CTTAAG 2 cut(s) 1049, 1780
MspI CCGG 4 cut(s) 166, 408, 2195, 2476
MspR9I CCNGG 5 cut(s) 925, 1431, 2476, 2477, 2499
MunI CAATTG 2 cut(s) 2099, 2240
Mva1269I GAATGC 5 cut(s) 150, 1546, 2130, 2170, 2228
MvaI CCWGG 3 cut(s) 925, 1431, 2499
MvnI CGCG 1 cut(s) 1281
MwoI GCNNNNNNNGC 3 cut(s) 908, 1796, 2195
NaeI GCCGGC 2 cut(s) 167, 2196
NciI CCSGG 2 cut(s) 2476, 2477
NdeI CATATG 1 cut(s) 2086
NgoMIV GCCGGC 2 cut(s) 165, 2194
NlaIV GGNNCC 3 cut(s) 45, 1601, 1959
NmuCI GTSAC 1 cut(s) 1821
NsiI ATGCAT 5 cut(s) 1214, 1269, 1900, 2086, 2228
NspI RCATGY 2 cut(s) 1420, 2271
PciI ACATGT 2 cut(s) 1416, 2267
PciSI GCTCTTC 1 cut(s) 1001
PcsI WCGNNNNNNNCGW 1 cut(s) 380
PctI GAATGC 5 cut(s) 150, 1546, 2130, 2170, 2228
PdiI GCCGGC 2 cut(s) 167, 2196
PdmI GAANNNNTTC 3 cut(s) 803, 2028, 2128
PfeI GAWTC 3 cut(s) 221, 2118, 2393
PflMI CCANNNNNTGG 1 cut(s) 2281
PinAI ACCGGT 1 cut(s) 407
Ple19I CGATCG 1 cut(s) 2172
PleI GAGTC 3 cut(s) 239, 491, 692
PpsI GAGTC 3 cut(s) 239, 491, 692
Ppu21I YACGTR 1 cut(s) 1189
PscI ACATGT 2 cut(s) 1416, 2267
Psp124BI GAGCTC 1 cut(s) 1200
Psp1406I AACGTT 1 cut(s) 1256
Psp6I CCWGG 3 cut(s) 923, 1429, 2497
PspGI CCWGG 3 cut(s) 923, 1429, 2497
PspN4I GGNNCC 3 cut(s) 45, 1601, 1959
PspPI GGNCC 3 cut(s) 44, 1157, 2010
PsrI GAACNNNNNNTAC 2 cut(s) 355, 387
PsuI RGATCY 5 cut(s) 472, 784, 859, 1630, 2436
PvuI CGATCG 1 cut(s) 2172
PvuII CAGCTG 1 cut(s) 1571
RsaI GTAC 5 cut(s) 50, 1218, 1563, 1613, 2141
RsaNI GTAC 5 cut(s) 49, 1217, 1562, 1612, 2140
RseI CAYNNNNRTG 2 cut(s) 557, 1772
SacI GAGCTC 1 cut(s) 1200
SapI GCTCTTC 1 cut(s) 1001
Sau96I GGNCC 3 cut(s) 44, 1157, 2010
SchI GAGTC 3 cut(s) 240, 492, 693
ScrFI CCNGG 5 cut(s) 925, 1431, 2476, 2477, 2499
SduI GDGCHC 2 cut(s) 913, 1200
SfaNI GCATC 7 cut(s) 283, 766, 1020, 1199, 1254, 1702, 1885
SinI GGWCC 2 cut(s) 44, 2010
SmaI CCCGGG 1 cut(s) 2477
SmiMI CAYNNNNRTG 2 cut(s) 557, 1772
SmlI CTYRAG 6 cut(s) 528, 535, 1049, 1780, 1922, 1996
SmoI CTYRAG 6 cut(s) 528, 535, 1049, 1780, 1922, 1996
SnaBI TACGTA 1 cut(s) 1189
SsiI CCGC 2 cut(s) 399, 1193
SspMI CTAG 2 cut(s) 810, 855
SstI GAGCTC 1 cut(s) 1200
StyD4I CCNGG 5 cut(s) 923, 1429, 2474, 2475, 2497
StyI CCWWGG 1 cut(s) 2349
TaaI ACNGT 9 cut(s) 215, 324, 346, 448, 959, 1103, 1122, 1755, 2461
TaiI ACGT 2 cut(s) 1191, 1259
TaqI TCGA 6 cut(s) 452, 700, 1750, 1827, 2443, 2463
TatI WGTACW 1 cut(s) 2139
TfiI GAWTC 3 cut(s) 221, 2118, 2393
TscAI CASTG 4 cut(s) 519, 1108, 2119, 2224
TseFI GTSAC 1 cut(s) 1821
Tsp45I GTSAC 1 cut(s) 1821
TspGWI ACGGA 3 cut(s) 36, 690, 1425
TspMI CCCGGG 1 cut(s) 2475
TspRI CASTG 4 cut(s) 519, 1108, 2119, 2224
Van91I CCANNNNNTGG 1 cut(s) 2281
Vha464I CTTAAG 2 cut(s) 1049, 1780
VpaK11BI GGWCC 2 cut(s) 44, 2010
XapI RAATTY 3 cut(s) 950, 1313, 2319
XceI RCATGY 2 cut(s) 1420, 2271
XmaI CCCGGG 1 cut(s) 2475
XmiI GTMKAC 2 cut(s) 672, 2485
XmnI GAANNNNTTC 3 cut(s) 803, 2028, 2128
XspI CTAG 2 cut(s) 810, 855
Zsp2I ATGCAT 5 cut(s) 1214, 1269, 1900, 2086, 2228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.