FvH4_3g11470

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000110
Physical Location & Seq
Forward (+)
6743915 .. 6748061
4147 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11470.t1

Sequence Viewer

Length: 2772 bp
ATGGCCTTGTCTGCAACAGACCTCTTGATCGGTAAACTTGCGACTATTCTTGAGAACGAAGGAACCACCATAGCCGGTGTTCGTGATGAAGTTGACAAGATTAAGCAGGAGCTTCTAAGCATGAAAGCTTTCCTCGAGGACGCGGAAGCCAAAAAGGTACAAACTGAAGGAGAGAAATTGTGGGTTGCAAGCATCAGAGACTTAGCCTATGACGTTGAAGATATCATTGATGAGTTCATGTATCACATGTATGAGAAGCAGAGTGGGGGTCGGCTTTTTAGGGGTCTACACAAAATCATTCATGCTCCAAATGATATCTTGTTCAGGCGTAGTATTGCAAAGAAGTTGCAAAAAATCACTGAAACAATAAAAGCCATTCCTGAGAGGAATCTAAGATATAGTTTCCGCCTTACTGTAGGAACAAGTGCTAGTACTGAAGATACATACAAATGGGTGCAGAACCAAGTGGAGTCTTCCTTTCTCATTACTGATGATGAACTTGTGGGGATTGAAAAAAAGAAGCAGATTCTGATTGGATGGCTCCTGGGCAAAGAGCAAAACCAAACTGTTGTCTCCGTGGTTGGGATGGGAGGATCTGGGAAGACTACTCTGGTTGCCACGACCTACACCAATGAAAGGGTAAAGAGACATTTCAATTGTTATGCGTGGATTACAATTTCCCAAACTTATGTTATTGCAGACTTGTTTCGAAGTTTAATCATGCAACTCCATAAATCAAGGAAGAAAGATATTCCTGCAAACTTGAATGCCATGAGCCACACAGAATTACAAGATACACTGGTTAACTACTTGGAGTCCAAACGGTACTTGGTTGTTCTAGATGATGTGTGGGATAACAAAGTCTGGAAAGAAATAAGGGTATCACTACTTGATCAAAGACTCGGAAGTCGAATAATACTGACAACCCGAAAAGAAGACATAGCATCAAGTTCTTTTGGAGTTGAAAGCCATGTTCACTACATCCAACCCCTGCAAAAGAATGACGCTTGGGAGCTCTTCAGAAAGAAAGCGTTCTCAACTAACCATGACAAAGCTTGTCCACCCGAGCTTGACTTTCTAGCTCGGGGACTTGTGGAAAAGTGTGAAGGCCTTCCTCTGGCTGTTGTTGCTTTGGGTGGTCTAATGTCTTCAAAAACGTCACCAGATCAATGGCACAGAGTCTTCAAGAGTTTGAATTGGCATTTAAATAACAATTCATTGCTTGACCCTGTGAAAACCCTCTTGTTGCTTAGCTTCAATGATTTGCCATCCCGATTGAAGCATTGCTTCCTCTATTGTTCCCTTTTTGCAGAAGATTATTCAATTCAAAGGAAAAGGATTATTAGATTGTGGATAGCTGAAGGATTTGTTGAATATGCGAAAGGGGTCACGCCGGAAGAAGTTGCAGATGGCTATCTTTTGGAACTCTGCTTCCGTAGCATGTTACAAGTTGTAGAAAGAAATGTAACAGGGAGACCGAAAAAAGTTAAGATGCATGATCTTATGCGAGAGCTTGCTTTGTCAACATGCGAGAGAGAAAAGTTTGGTCTTGTCCACGACGGGAGAGAAGTAATGGAAGACATCTCAAGCCGTCGCTTGTCAATTCACGCAACGAGTGATGGAGGAGAAATCAAATCATTCCTGGGTATGTCAAATATTCGTTCTCTTCTTGTCTTTGCCACTGACATGTCCTCAATGTCTTTATTAAATGCAAATGCACTACTTTCTCGATCCAAATTGTTGAGGAGTCTAGACTTGGAGGGTGTTCAAATTGATAAATTGCCAGATGCAGTTGCTTCCATGTTCAACTTGAGATATTTAAATTTGAGGGGCACTTTAATCAGGGAACTTCCAAAGTCCATAGGGCGTCTCCGCAACCTTCAATTTCTGAACATGAGGGACAGTAAGATAGAGTCACTTCCACAAGGAATTATAAAGTTGTTCAACCTGCGCCATCTAATTGTGTCTCGCCACACTGGAGACTCTCAAGACTTCAAAATTGCATGGGGAACAAAAGCGCCTTCAGATATTTGCAAGTTGCAGAAATTGCAAATTTTAACATATATTGAATCAGAAGGGGACACAATCAGACTTATCGGCAACTTAACACAACTTCTGAGCATCGGCATATCGAATTTGAAAGAAAGAGATGGGATAGACCTTTGGTTTTCACTTAAAAAGTTGACTCTGCTTCACACGTTGGACTTAATGGCAAGTAATGAAGAAGAAATTCTTCCAGTGAATGCACAATGTCCGCCTCTTCCACACCTTCGACGGCTTTTGTTTAATGGCAGACTACTGCCAAACGTAACACCTTGGATTTCTTCACTGCATAGCCTCACACTTTTGTGTCTGCGTTGGTCAAGACTTGAAGACGATTTACTACCTCATATTGAAGCACTGCCCAATTTGACAAGGCTATATCTCTGTAATGCATATGTGGGAGAAGAGTTGTATTTCCGCAGAGGCTTTGTAAAGCTGGTGAGATTGGAGTTGTTGAATTTTGCATCGTTGAAAAAGATTACTATAGAGAAAGGGGTGATGCCCGATCTCCGATACTTACGGGTTGATGGCTTCATGGAATTGAAGGCAGTGCCGCTGGGTCTCGAATACCTTTCAAATCTACAAAGCCTGAGCCTGAAAGATGTTCCAACAGAAATTATAAACCCCATTCGGAAAGAAGGTGAGGATCGCAAAAATGTACAACACATCCCTGAGATCAGACATTTTTTCCAACAGTCATCCAAGTGGTTCTACGAAAACTTGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

924

Amino Acids

105.72

Weight (kDa)

8.83

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 8 - 88 2.1e-25 Rx N-terminal domain
NB-ARC PF00931 171 - 348 3.4e-46 NB-ARC domain
WHD_DRP PF23559 435 - 506 3.5e-20 Disease resistance protein Winged helix domain
LRR_14 PF23598 553 - 880 1.1e-40 Leucine-rich repeat region
LRR_8 PF13855 581 - 636 7.6e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1934, 2663
AasI GACNNNNNNGTC 1 cut(s) 906
AbsI CCTCGAGG 1 cut(s) 134
Acc36I ACCTGC 1 cut(s) 1956
AccI GTMKAC 1 cut(s) 286
AccII CGCG 1 cut(s) 143
AciI CCGC 6 cut(s) 143, 406, 1873, 2255, 2461, 2597
AclWI GGATC 3 cut(s) 601, 1725, 2697
AcsI RAATTY 5 cut(s) 1822, 2052, 2134, 2229, 2500
AcuI CTGAAG 5 cut(s) 186, 456, 1003, 1380, 2007
AcyI GRCGYC 1 cut(s) 1867
AfaI GTAC 4 cut(s) 159, 433, 827, 2703
AfiI CCNNNNNNNGG 3 cut(s) 582, 636, 1117
AflIII ACRYGT 3 cut(s) 246, 1686, 2196
AjnI CCWGG 2 cut(s) 543, 1641
AleI CACNNNNGTG 1 cut(s) 2347
AloI GAACNNNNNNTCC 2 cut(s) 1416, 1448
Alw21I GWGCWC 1 cut(s) 1017
Alw26I GTCTC 8 cut(s) 192, 577, 640, 1468, 1874, 1971, 1974, 2609
AlwI GGATC 3 cut(s) 601, 1725, 2697
AlwNI CAGNNNCTG 1 cut(s) 529
Ama87I CYCGRG 3 cut(s) 134, 1064, 1083
AoxI GGCC 2 cut(s) 3, 1108
ApoI RAATTY 5 cut(s) 1822, 2052, 2134, 2229, 2500
Asp700I GAANNNNTTC 5 cut(s) 128, 1031, 1110, 2229, 2232
AspLEI GCGC 2 cut(s) 1953, 2020
AsuHPI GGTGA 4 cut(s) 1152, 2494, 2551, 2696
AsuII TTCGAA 1 cut(s) 709
AvaI CYCGRG 3 cut(s) 134, 1064, 1083
BaeGI GKGCMC 1 cut(s) 1835
BaeI ACNNNNGTAYC 2 cut(s) 786, 819
BanII GRGCYC 1 cut(s) 1017
BarI GAAGNNNNNNTAC 2 cut(s) 2364, 2396
BbsI GAAGAC 7 cut(s) 465, 608, 942, 1140, 1174, 1584, 2379
Bbv12I GWGCWC 1 cut(s) 1017
BccI CCATC 8 cut(s) 531, 580, 1276, 1403, 1613, 1962, 2144, 2564
BceAI ACGGC 2 cut(s) 1575, 2291
BciT130I CCWGG 2 cut(s) 545, 1643
BclI TGATCA 1 cut(s) 892
BcoDI GTCTC 8 cut(s) 192, 577, 640, 1468, 1874, 1971, 1974, 2609
BfaI CTAG 5 cut(s) 429, 839, 1079, 1751, 2770
BfmI CTRYAG 2 cut(s) 414, 2526
BfoI RGCGCY 1 cut(s) 2021
BfuAI ACCTGC 1 cut(s) 1956
BisI GCNGC 1 cut(s) 2597
BlpI GCTNAGC 1 cut(s) 1250
BlsI GCNGC 1 cut(s) 2598
BmcAI AGTACT 1 cut(s) 433
Bme1390I CCNGG 2 cut(s) 545, 1643
BmeT110I CYCGRG 3 cut(s) 134, 1064, 1083
BmiI GGNNCC 2 cut(s) 64, 542
BmrFI CCNGG 2 cut(s) 545, 1643
BmsI GCATC 7 cut(s) 201, 953, 1482, 1777, 2130, 2516, 2532
BpiI GAAGAC 7 cut(s) 465, 608, 942, 1140, 1174, 1584, 2379
BpmI CTGGAG 1 cut(s) 1998
Bpu10I CCTNAGC 1 cut(s) 2633
Bpu1102I GCTNAGC 1 cut(s) 1250
Bpu14I TTCGAA 1 cut(s) 709
BpuEI CTTGAG 4 cut(s) 71, 1570, 1831, 1971
BsaBI GATNNNNATC 1 cut(s) 1413
BsaHI GRCGYC 1 cut(s) 1867
BsaI GGTCTC 2 cut(s) 1468, 2609
BsaJI CCNNGG 4 cut(s) 544, 576, 1642, 2315
Bsc4I CCNNNNNNNGG 3 cut(s) 582, 636, 1117
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 3 cut(s) 804, 1981, 2237
Bse3DI GCAATG 2 cut(s) 1217, 1282
Bse8I GATNNNNATC 1 cut(s) 1413
BseBI CCWGG 2 cut(s) 545, 1643
BseDI CCNNGG 4 cut(s) 544, 576, 1642, 2315
BseGI GGATG 6 cut(s) 542, 591, 981, 1268, 2709, 2741
BseJI GATNNNNATC 1 cut(s) 1413
BseLI CCNNNNNNNGG 3 cut(s) 582, 636, 1117
BseMI GCAATG 2 cut(s) 1217, 1282
BseMII CTCAG 4 cut(s) 372, 2108, 2624, 2706
BseNI ACTGG 3 cut(s) 804, 1981, 2237
BseRI GAGGAG 2 cut(s) 1638, 1759
BseSI GKGCMC 1 cut(s) 1835
BseYI CCCAGC 1 cut(s) 2599
BsgI GTGCAG 1 cut(s) 476
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 2 cut(s) 5, 1110
BsiHKAI GWGCWC 1 cut(s) 1017
BsiHKCI CYCGRG 3 cut(s) 134, 1064, 1083
BsiSI CCGG 2 cut(s) 75, 1394
BslFI GGGAC 3 cut(s) 1101, 1913, 2093
BslI CCNNNNNNNGG 3 cut(s) 582, 636, 1117
BsmAI GTCTC 8 cut(s) 192, 577, 640, 1468, 1874, 1971, 1974, 2609
BsmBI CGTCTC 1 cut(s) 1874
BsmFI GGGAC 3 cut(s) 1101, 1913, 2093
BsmI GAATGC 2 cut(s) 772, 2248
BsnI GGCC 2 cut(s) 5, 1110
Bso31I GGTCTC 2 cut(s) 1468, 2609
BsoBI CYCGRG 3 cut(s) 134, 1064, 1083
Bsp119I TTCGAA 1 cut(s) 709
Bsp1286I GDGCHC 2 cut(s) 1017, 1835
Bsp1407I TGTACA 1 cut(s) 2701
Bsp143I GATC 9 cut(s) 27, 593, 892, 1165, 1498, 1730, 2548, 2689, 2718
Bsp1720I GCTNAGC 1 cut(s) 1250
BspACI CCGC 6 cut(s) 143, 406, 1873, 2255, 2461, 2597
BspANI GGCC 2 cut(s) 5, 1110
BspCNI CTCAG 4 cut(s) 373, 2109, 2625, 2707
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 2 cut(s) 64, 542
BspMI ACCTGC 1 cut(s) 1956
BspPI GGATC 3 cut(s) 601, 1725, 2697
BspQI GCTCTTC 1 cut(s) 1022
BspT104I TTCGAA 1 cut(s) 709
BspTNI GGTCTC 2 cut(s) 1468, 2609
BsrDI GCAATG 2 cut(s) 1217, 1282
BsrFI RCCGGY 1 cut(s) 74
BsrGI TGTACA 1 cut(s) 2701
BsrI ACTGG 3 cut(s) 804, 1981, 2237
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 4 cut(s) 544, 576, 1642, 2315
BssMI GATC 9 cut(s) 27, 593, 892, 1165, 1498, 1730, 2548, 2689, 2718
BssNI GRCGYC 1 cut(s) 1867
BssT1I CCWWGG 1 cut(s) 2315
Bst2UI CCWGG 2 cut(s) 545, 1643
Bst4CI ACNGT 5 cut(s) 415, 568, 825, 1904, 2739
Bst6I CTCTTC 4 cut(s) 1022, 1671, 2265, 2442
BstACI GRCGYC 1 cut(s) 1867
BstAPI GCANNNNNTGC 1 cut(s) 2047
BstAUI TGTACA 1 cut(s) 2701
BstBI TTCGAA 1 cut(s) 709
BstC8I GCNNGC 2 cut(s) 190, 1515
BstDEI CTNAG 8 cut(s) 116, 202, 381, 392, 1250, 2117, 2633, 2715
BstDSI CCRYGG 1 cut(s) 576
BstF5I GGATG 6 cut(s) 542, 591, 981, 1268, 2709, 2741
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 2021
BstHHI GCGC 2 cut(s) 1953, 2020
BstKTI GATC 9 cut(s) 30, 596, 895, 1168, 1501, 1733, 2551, 2692, 2721
BstMAI GTCTC 8 cut(s) 192, 577, 640, 1468, 1874, 1971, 1974, 2609
BstMBI GATC 9 cut(s) 27, 593, 892, 1165, 1498, 1730, 2548, 2689, 2718
BstMWI GCNNNNNNNGC 4 cut(s) 11, 1127, 1437, 2047
BstNI CCWGG 2 cut(s) 545, 1643
BstNSI RCATGY 4 cut(s) 250, 1444, 1530, 1690
BstSCI CCNGG 2 cut(s) 543, 1641
BstSFI CTRYAG 2 cut(s) 414, 2526
BstSLI GKGCMC 1 cut(s) 1835
BstUI CGCG 1 cut(s) 143
BstV2I GAAGAC 7 cut(s) 465, 608, 942, 1140, 1174, 1584, 2379
BstX2I RGATCY 1 cut(s) 593
BstXI CCANNNNNNTGG 1 cut(s) 1170
BstYI RGATCY 1 cut(s) 593
BsuRI GGCC 2 cut(s) 5, 1110
BtgI CCRYGG 1 cut(s) 576
BtsCI GGATG 6 cut(s) 542, 591, 981, 1268, 2709, 2741
BtsI GCAGTG 3 cut(s) 2327, 2399, 2598
BtsIMutI CAGTG 8 cut(s) 357, 797, 1680, 1974, 2244, 2327, 2399, 2598
BveI ACCTGC 1 cut(s) 1956
Cac8I GCNNGC 2 cut(s) 190, 1515
CaiI CAGNNNCTG 1 cut(s) 529
CfoI GCGC 2 cut(s) 1953, 2020
Cfr10I RCCGGY 1 cut(s) 74
CseI GACGC 3 cut(s) 149, 1013, 1856
Csp6I GTAC 4 cut(s) 158, 432, 826, 2702
CviQI GTAC 4 cut(s) 158, 432, 826, 2702
DdeI CTNAG 8 cut(s) 116, 202, 381, 392, 1250, 2117, 2633, 2715
DpnI GATC 9 cut(s) 29, 595, 894, 1167, 1500, 1732, 2550, 2691, 2720
DpnII GATC 9 cut(s) 27, 593, 892, 1165, 1498, 1730, 2548, 2689, 2718
DraI TTTAAA 2 cut(s) 1206, 1821
DrdI GACNNNNNNGTC 1 cut(s) 906
DseDI GACNNNNNNGTC 1 cut(s) 906
Eam1104I CTCTTC 4 cut(s) 1022, 1671, 2265, 2442
EarI CTCTTC 4 cut(s) 1022, 1671, 2265, 2442
EciI GGCGGA 2 cut(s) 395, 2244
Ecl136II GAGCTC 1 cut(s) 1015
Eco130I CCWWGG 1 cut(s) 2315
Eco147I AGGCCT 1 cut(s) 1110
Eco24I GRGCYC 1 cut(s) 1017
Eco31I GGTCTC 2 cut(s) 1468, 2609
Eco32I GATATC 2 cut(s) 223, 316
Eco53kI GAGCTC 1 cut(s) 1015
Eco57I CTGAAG 5 cut(s) 186, 456, 1003, 1380, 2007
Eco88I CYCGRG 3 cut(s) 134, 1064, 1083
EcoICRI GAGCTC 1 cut(s) 1015
EcoRII CCWGG 2 cut(s) 543, 1641
EcoRV GATATC 2 cut(s) 223, 316
EcoT14I CCWWGG 1 cut(s) 2315
EcoT22I ATGCAT 2 cut(s) 1497, 2437
EcoT38I GRGCYC 1 cut(s) 1017
ErhI CCWWGG 1 cut(s) 2315
Esp3I CGTCTC 1 cut(s) 1874
FalI AAGNNNNNCTT 4 cut(s) 1271, 1303, 2217, 2249
FaqI GGGAC 3 cut(s) 1101, 1913, 2093
FauNDI CATATG 1 cut(s) 2437
FbaI TGATCA 1 cut(s) 892
FblI GTMKAC 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 2597
FokI GGATG 6 cut(s) 549, 598, 968, 1255, 2696, 2728
FriOI GRGCYC 1 cut(s) 1017
Fsp4HI GCNGC 1 cut(s) 2597
FspBI CTAG 5 cut(s) 429, 839, 1079, 1751, 2770
GlaI GCGC 2 cut(s) 1952, 2019
GluI GCNGC 1 cut(s) 2597
GsaI CCCAGC 1 cut(s) 2603
GsuI CTGGAG 1 cut(s) 1998
HaeII RGCGCY 1 cut(s) 2021
HaeIII GGCC 2 cut(s) 5, 1110
HapII CCGG 2 cut(s) 75, 1394
HgaI GACGC 3 cut(s) 149, 1013, 1856
HhaI GCGC 2 cut(s) 1953, 2020
Hin1I GRCGYC 1 cut(s) 1867
Hin6I GCGC 2 cut(s) 1951, 2018
HinP1I GCGC 2 cut(s) 1951, 2018
HincII GTYRAC 4 cut(s) 94, 805, 1524, 2184
HindII GTYRAC 4 cut(s) 94, 805, 1524, 2184
HindIII AAGCTT 2 cut(s) 126, 1053
HpaI GTTAAC 1 cut(s) 805
HpaII CCGG 2 cut(s) 75, 1394
HphI GGTGA 4 cut(s) 1152, 2494, 2551, 2696
Hpy166II GTNNAC 9 cut(s) 35, 94, 287, 805, 976, 1061, 1524, 1555, 2184
Hpy8I GTNNAC 9 cut(s) 35, 94, 287, 805, 976, 1061, 1524, 1555, 2184
Hpy99I CGWCG 3 cut(s) 1562, 1596, 2277
HpyCH4III ACNGT 5 cut(s) 415, 568, 825, 1904, 2739
HpyCH4IV ACGT 4 cut(s) 213, 1157, 2198, 2307
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 1127, 1437, 2047
HpyF3I CTNAG 8 cut(s) 116, 202, 381, 392, 1250, 2117, 2633, 2715
HpySE526I ACGT 4 cut(s) 213, 1157, 2198, 2307
Hsp92I GRCGYC 1 cut(s) 1867
HspAI GCGC 2 cut(s) 1951, 2018
Ksp22I TGATCA 1 cut(s) 892
KspAI GTTAAC 1 cut(s) 805
Kzo9I GATC 9 cut(s) 27, 593, 892, 1165, 1498, 1730, 2548, 2689, 2718
LguI GCTCTTC 1 cut(s) 1022
LmnI GCTCC 4 cut(s) 109, 310, 546, 1012
LweI GCATC 7 cut(s) 201, 953, 1482, 1777, 2130, 2516, 2532
MaeI CTAG 5 cut(s) 429, 839, 1079, 1751, 2770
MaeII ACGT 4 cut(s) 213, 1157, 2198, 2307
MaeIII GTNAC 6 cut(s) 1158, 1387, 1443, 1465, 1914, 2308
MalI GATC 9 cut(s) 29, 595, 894, 1167, 1500, 1732, 2550, 2691, 2720
MboI GATC 9 cut(s) 27, 593, 892, 1165, 1498, 1730, 2548, 2689, 2718
MfeI CAATTG 1 cut(s) 655
MflI RGATCY 1 cut(s) 593
MhlI GDGCHC 2 cut(s) 1017, 1835
MlyI GAGTC 8 cut(s) 479, 824, 894, 1188, 1756, 1922, 1976, 2179
MmeI TCCRAC 4 cut(s) 1009, 2181, 2675, 2758
Mph1103I ATGCAT 2 cut(s) 1497, 2437
MroXI GAANNNNTTC 5 cut(s) 128, 1031, 1110, 2229, 2232
MslI CAYNNNNRTG 5 cut(s) 249, 448, 1685, 2347, 2746
MspA1I CMGCKG 1 cut(s) 2599
MspI CCGG 2 cut(s) 75, 1394
MspR9I CCNGG 2 cut(s) 545, 1643
MunI CAATTG 1 cut(s) 655
Mva1269I GAATGC 2 cut(s) 772, 2248
MvaI CCWGG 2 cut(s) 545, 1643
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 4 cut(s) 11, 1127, 1437, 2047
NdeI CATATG 1 cut(s) 2437
NdeII GATC 9 cut(s) 27, 593, 892, 1165, 1498, 1730, 2548, 2689, 2718
NlaIV GGNNCC 2 cut(s) 64, 542
NmuCI GTSAC 3 cut(s) 1158, 1387, 1914
NsiI ATGCAT 2 cut(s) 1497, 2437
NspI RCATGY 4 cut(s) 250, 1444, 1530, 1690
NspV TTCGAA 1 cut(s) 709
OliI CACNNNNGTG 1 cut(s) 2347
PaeR7I CTCGAG 1 cut(s) 134
PceI AGGCCT 1 cut(s) 1110
PciI ACATGT 2 cut(s) 246, 1686
PciSI GCTCTTC 1 cut(s) 1022
PctI GAATGC 2 cut(s) 772, 2248
PdmI GAANNNNTTC 5 cut(s) 128, 1031, 1110, 2229, 2232
PfeI GAWTC 3 cut(s) 388, 526, 2069
PkrI GCNGC 1 cut(s) 2598
PleI GAGTC 8 cut(s) 478, 823, 894, 1187, 1755, 1921, 1976, 2179
PpsI GAGTC 8 cut(s) 478, 823, 894, 1187, 1755, 1921, 1976, 2179
PscI ACATGT 2 cut(s) 246, 1686
PsiI TTATAA 2 cut(s) 1934, 2663
Psp124BI GAGCTC 1 cut(s) 1017
Psp6I CCWGG 2 cut(s) 543, 1641
PspFI CCCAGC 1 cut(s) 2599
PspGI CCWGG 2 cut(s) 543, 1641
PspN4I GGNNCC 2 cut(s) 64, 542
PspXI VCTCGAGB 1 cut(s) 134
PstNI CAGNNNCTG 1 cut(s) 529
PsuI RGATCY 1 cut(s) 593
RsaI GTAC 4 cut(s) 159, 433, 827, 2703
RsaNI GTAC 4 cut(s) 158, 432, 826, 2702
RseI CAYNNNNRTG 5 cut(s) 249, 448, 1685, 2347, 2746
SacI GAGCTC 1 cut(s) 1017
SapI GCTCTTC 1 cut(s) 1022
SatI GCNGC 1 cut(s) 2597
Sau3AI GATC 9 cut(s) 27, 593, 892, 1165, 1498, 1730, 2548, 2689, 2718
ScaI AGTACT 1 cut(s) 433
SchI GAGTC 8 cut(s) 479, 824, 894, 1188, 1756, 1922, 1976, 2179
ScrFI CCNGG 2 cut(s) 545, 1643
SduI GDGCHC 2 cut(s) 1017, 1835
SfaNI GCATC 7 cut(s) 201, 953, 1482, 1777, 2130, 2516, 2532
SfcI CTRYAG 2 cut(s) 414, 2526
Sfr274I CTCGAG 1 cut(s) 134
SfuI TTCGAA 1 cut(s) 709
SlaI CTCGAG 1 cut(s) 134
SmiI ATTTAAAT 2 cut(s) 1206, 1821
SmiMI CAYNNNNRTG 5 cut(s) 249, 448, 1685, 2347, 2746
SmlI CTYRAG 5 cut(s) 50, 134, 1585, 1810, 1986
SmoI CTYRAG 5 cut(s) 50, 134, 1585, 1810, 1986
SseBI AGGCCT 1 cut(s) 1110
SsiI CCGC 6 cut(s) 143, 406, 1873, 2255, 2461, 2597
SspI AATATT 1 cut(s) 1657
SspMI CTAG 5 cut(s) 429, 839, 1079, 1751, 2770
SstI GAGCTC 1 cut(s) 1017
StuI AGGCCT 1 cut(s) 1110
StyD4I CCNGG 2 cut(s) 543, 1641
StyI CCWWGG 1 cut(s) 2315
SwaI ATTTAAAT 2 cut(s) 1206, 1821
TaaI ACNGT 5 cut(s) 415, 568, 825, 1904, 2739
TaiI ACGT 4 cut(s) 216, 1160, 2201, 2310
TaqI TCGA 7 cut(s) 135, 709, 910, 1729, 2132, 2272, 2607
TaqII GACCGA 1 cut(s) 1492
TatI WGTACW 2 cut(s) 431, 2701
TauI GCSGC 1 cut(s) 2599
TfiI GAWTC 3 cut(s) 388, 526, 2069
TscAI CASTG 8 cut(s) 364, 804, 1687, 1981, 2244, 2334, 2406, 2598
TseFI GTSAC 3 cut(s) 1158, 1387, 1914
Tsp45I GTSAC 3 cut(s) 1158, 1387, 1914
TspDTI ATGAA 9 cut(s) 102, 137, 226, 290, 510, 648, 1206, 2235, 2566
TspGWI ACGGA 2 cut(s) 565, 1424
TspRI CASTG 8 cut(s) 364, 804, 1687, 1981, 2244, 2334, 2406, 2598
XapI RAATTY 5 cut(s) 1822, 2052, 2134, 2229, 2500
XbaI TCTAGA 2 cut(s) 838, 1750
XceI RCATGY 4 cut(s) 250, 1444, 1530, 1690
XcmI CCANNNNNNNNNTGG 1 cut(s) 826
XhoI CTCGAG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 286
XmnI GAANNNNTTC 5 cut(s) 128, 1031, 1110, 2229, 2232
XspI CTAG 5 cut(s) 429, 839, 1079, 1751, 2770
ZrmI AGTACT 1 cut(s) 433
Zsp2I ATGCAT 2 cut(s) 1497, 2437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.